RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 B4E1Z4 1266 aa27.99■■■□□ 2.07
LSM4-202ENST00000593564 KPNA6O60684 536 aa27.99■■■□□ 2.07
LSM4-202ENST00000593564 USP38Q8NB14 1042 aa27.99■■■□□ 2.07
LSM4-202ENST00000593564 VWCEQ96DN2 955 aa27.99■■■□□ 2.07
LSM4-202ENST00000593564 GAS2L1Q99501 681 aaPredicted RBP27.99■■■□□ 2.07
LSM4-202ENST00000593564 TXNP10599 105 aaKnown RBP27.98■■■□□ 2.07
LSM4-202ENST00000593564 IMMTQ16891 758 aaKnown RBP27.98■■■□□ 2.07
LSM4-202ENST00000593564 ASPRV1Q53RT3 343 aa27.98■■■□□ 2.07
LSM4-202ENST00000593564 ADGRF4Q8IZF3 695 aa27.98■■■□□ 2.07
LSM4-202ENST00000593564 ENAHQ8N8S7 591 aaPredicted RBP27.98■■■□□ 2.07
LSM4-202ENST00000593564 SCLYQ96I15 445 aa27.98■■■□□ 2.07
LSM4-202ENST00000593564 SCN10AQ9Y5Y9 1956 aa27.98■■■□□ 2.07
LSM4-202ENST00000593564 TTC28Q96AY4 2481 aa27.98■■■□□ 2.07
LSM4-202ENST00000593564 PFKMP08237 780 aa27.97■■■□□ 2.07
LSM4-202ENST00000593564 CYP2C9P11712 490 aa27.97■■■□□ 2.07
LSM4-202ENST00000593564 TTLL4Q14679 1199 aa27.97■■■□□ 2.07
LSM4-202ENST00000593564 NBPF20Q3BBV1 942 aa27.97■■■□□ 2.07
LSM4-202ENST00000593564 NFRKBQ6P4R8 1299 aa27.97■■■□□ 2.07
LSM4-202ENST00000593564 EXOC6Q8TAG9 804 aa27.97■■■□□ 2.07
LSM4-202ENST00000593564 COPS5Q92905 334 aa27.97■■■□□ 2.07
LSM4-202ENST00000593564 PRDM12Q9H4Q4 367 aa27.97■■■□□ 2.07
LSM4-202ENST00000593564 ZSWIM5Q9P217 1185 aa27.97■■■□□ 2.07
LSM4-202ENST00000593564 CTNNA3Q9UI47 895 aa27.97■■■□□ 2.07
LSM4-202ENST00000593564 NKX2-4Q9H2Z4 354 aa27.96■■■□□ 2.07
LSM4-202ENST00000593564 YBX2Q9Y2T7 364 aaKnown RBP27.96■■■□□ 2.07
LSM4-202ENST00000593564 SLC4A7Q9Y6M7 1214 aa27.96■■■□□ 2.07
LSM4-202ENST00000593564 ARIH2O95376 493 aa27.95■■■□□ 2.06
LSM4-202ENST00000593564 PTPN11Q06124 597 aaPredicted RBP27.95■■■□□ 2.06
LSM4-202ENST00000593564 FAM47CQ5HY64 1035 aa27.95■■■□□ 2.06
LSM4-202ENST00000593564 MCF2L2Q86YR7 1114 aa27.95■■■□□ 2.06
LSM4-202ENST00000593564 SYTL5Q8TDW5 730 aaPredicted RBP27.95■■■□□ 2.06
LSM4-202ENST00000593564 TBC1D5Q92609 795 aa27.95■■■□□ 2.06
LSM4-202ENST00000593564 KRT23Q9C075 422 aa27.95■■■□□ 2.06
LSM4-202ENST00000593564 MYO9BQ13459 2157 aa27.94■■■□□ 2.06
LSM4-202ENST00000593564 PARP1P09874 1014 aaKnown RBP27.94■■■□□ 2.06
LSM4-202ENST00000593564 QRICH1Q2TAL8 776 aa27.94■■■□□ 2.06
LSM4-202ENST00000593564 CCDC62Q6P9F0 684 aa27.94■■■□□ 2.06
LSM4-202ENST00000593564 NSUN6Q8TEA1 469 aaKnown RBP27.94■■■□□ 2.06
LSM4-202ENST00000593564 YTHDC1Q96MU7 727 aaKnown RBP27.94■■■□□ 2.06
LSM4-202ENST00000593564 CNNM2Q9H8M5 875 aa27.94■■■□□ 2.06
LSM4-202ENST00000593564 SLC28A3Q9HAS3 691 aa27.94■■■□□ 2.06
LSM4-202ENST00000593564 SYMPKQ92797 1274 aaKnown RBP27.93■■■□□ 2.06
LSM4-202ENST00000593564 TAAR1Q96RJ0 339 aa27.93■■■□□ 2.06
LSM4-202ENST00000593564 UBAC1Q9BSL1 405 aa27.93■■■□□ 2.06
LSM4-202ENST00000593564 COL20A1Q9P218 1284 aa27.93■■■□□ 2.06
LSM4-202ENST00000593564 MRPL11Q9Y3B7 192 aaKnown RBP27.93■■■□□ 2.06
LSM4-202ENST00000593564 CHD7Q9P2D1 2997 aa27.93■■■□□ 2.06
LSM4-202ENST00000593564 RFC2P35250 354 aa27.92■■■□□ 2.06
LSM4-202ENST00000593564 FBXO11Q86XK2 927 aa27.92■■■□□ 2.06
LSM4-202ENST00000593564 IWS1Q96ST2 819 aa27.92■■■□□ 2.06
LSM4-202ENST00000593564 JMJD4Q9H9V9 463 aa27.92■■■□□ 2.06
LSM4-202ENST00000593564 ZBBXA8MT70 800 aa27.91■■■□□ 2.06
LSM4-202ENST00000593564 PITPNM1O00562 1244 aa27.91■■■□□ 2.06
LSM4-202ENST00000593564 DHX16O60231 1041 aaKnown RBP27.91■■■□□ 2.06
LSM4-202ENST00000593564 ADGRE1Q14246 886 aa27.91■■■□□ 2.06
LSM4-202ENST00000593564 RMDN3Q96TC7 470 aa27.91■■■□□ 2.06
LSM4-202ENST00000593564 PCDHA11Q9Y5I1 949 aa27.91■■■□□ 2.06
LSM4-202ENST00000593564 ATP2A2P16615 1042 aaKnown RBP27.9■■■□□ 2.06
LSM4-202ENST00000593564 RABGGTBP53611 331 aa27.9■■■□□ 2.06
LSM4-202ENST00000593564 STXBP2Q15833 593 aa27.9■■■□□ 2.06
LSM4-202ENST00000593564 SEPT14Q6ZU15 432 aa27.9■■■□□ 2.06
LSM4-202ENST00000593564 DEFB128Q7Z7B8 93 aa27.9■■■□□ 2.06
LSM4-202ENST00000593564 PPP1R13LQ8WUF5 828 aa27.9■■■□□ 2.06
LSM4-202ENST00000593564 AFG1LQ8WV93 481 aa27.9■■■□□ 2.06
LSM4-202ENST00000593564 IL25Q9H293 177 aa27.9■■■□□ 2.06
LSM4-202ENST00000593564 GH1P01241 217 aa27.89■■■□□ 2.06
LSM4-202ENST00000593564 ARHGAP1Q07960 439 aa27.89■■■□□ 2.06
LSM4-202ENST00000593564 LY6KQ17RY6 165 aa27.89■■■□□ 2.06
LSM4-202ENST00000593564 TJAP1Q5JTD0 557 aa27.89■■■□□ 2.06
LSM4-202ENST00000593564 IFIT1BQ5T764 474 aaKnown RBP27.89■■■□□ 2.06
LSM4-202ENST00000593564 RETREG2Q8NC44 543 aa27.89■■■□□ 2.06
LSM4-202ENST00000593564 VAT1LQ9HCJ6 419 aa27.89■■■□□ 2.06
LSM4-202ENST00000593564 MMP3P08254 477 aa27.88■■■□□ 2.05
LSM4-202ENST00000593564 IQCF3P0C7M6 154 aa27.88■■■□□ 2.05
LSM4-202ENST00000593564 ACTN1P12814 892 aa27.88■■■□□ 2.05
LSM4-202ENST00000593564 BFSP2Q13515 415 aa27.88■■■□□ 2.05
LSM4-202ENST00000593564 GBF1Q92538 1859 aa27.88■■■□□ 2.05
LSM4-202ENST00000593564 MYOGP15173 224 aa27.87■■■□□ 2.05
LSM4-202ENST00000593564 SEC23AQ15436 765 aa27.87■■■□□ 2.05
LSM4-202ENST00000593564 ARHGEF16Q5VV41 709 aa27.87■■■□□ 2.05
LSM4-202ENST00000593564 PPP2R2DQ66LE6 453 aa27.87■■■□□ 2.05
LSM4-202ENST00000593564 SESTD1Q86VW0 696 aa27.87■■■□□ 2.05
LSM4-202ENST00000593564 STAG2Q8N3U4 1231 aa27.87■■■□□ 2.05
LSM4-202ENST00000593564 PPM1EQ8WY54 764 aa27.87■■■□□ 2.05
LSM4-202ENST00000593564 AMNQ9BXJ7 453 aa27.87■■■□□ 2.05
LSM4-202ENST00000593564 PRDM6Q9NQX0 595 aa27.87■■■□□ 2.05
LSM4-202ENST00000593564 NOD1Q9Y239 953 aa27.87■■■□□ 2.05
LSM4-202ENST00000593564 EIF3JO75822 258 aaKnown RBP27.86■■■□□ 2.05
LSM4-202ENST00000593564 EIF2AK2P19525 551 aaKnown RBP27.86■■■□□ 2.05
LSM4-202ENST00000593564 IGFBP4P22692 258 aa27.86■■■□□ 2.05
LSM4-202ENST00000593564 HSD17B4P51659 736 aa27.86■■■□□ 2.05
LSM4-202ENST00000593564 GHRHRQ02643 423 aa27.86■■■□□ 2.05
LSM4-202ENST00000593564 PXMP2Q9NR77 195 aa27.86■■■□□ 2.05
LSM4-202ENST00000593564 OPLAHO14841 1288 aa27.85■■■□□ 2.05
LSM4-202ENST00000593564 CFBP00751 764 aa27.85■■■□□ 2.05
LSM4-202ENST00000593564 NR3C2P08235 984 aa27.85■■■□□ 2.05
LSM4-202ENST00000593564 CASTP20810 708 aaKnown RBP27.85■■■□□ 2.05
LSM4-202ENST00000593564 PTGISQ16647 500 aa27.85■■■□□ 2.05
LSM4-202ENST00000593564 KAT2BQ92831 832 aa27.85■■■□□ 2.05
LSM4-202ENST00000593564 EMID1Q96A84 441 aaPredicted RBP27.85■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms