RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 IQSEC1Q6DN90 963 aa13.71□□□□□ -0.21
LIG3-213ENST00000590630 TAPT1Q6NXT6 567 aa13.71□□□□□ -0.21
LIG3-213ENST00000590630 PPP1R18Q6NYC8 613 aa13.71□□□□□ -0.21
LIG3-213ENST00000590630 EEPD1Q7L9B9 569 aa13.71□□□□□ -0.21
LIG3-213ENST00000590630 RNF180Q86T96 592 aa13.71□□□□□ -0.21
LIG3-213ENST00000590630 CUL5Q93034 780 aa13.71□□□□□ -0.21
LIG3-213ENST00000590630 C11orf49Q9H6J7 331 aa13.71□□□□□ -0.21
LIG3-213ENST00000590630 PSTPIP2Q9H939 334 aa13.71□□□□□ -0.21
LIG3-213ENST00000590630 SYNRGQ9UMZ2 1314 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 RBM47A0AV96 593 aaKnown RBP13.7□□□□□ -0.22
LIG3-213ENST00000590630 ADCY6O43306 1168 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 ADAMTS4O75173 837 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 PGK1P00558 417 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 COL6A1P12109 1028 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 IFNAR1P17181 557 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 EIF2AK2P19525 551 aaKnown RBP13.7□□□□□ -0.22
LIG3-213ENST00000590630 ADCYAP1R1P41586 468 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 CCT2P78371 535 aaKnown RBP13.7□□□□□ -0.22
LIG3-213ENST00000590630 LRRC41Q15345 812 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 STXBP2Q15833 593 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 NTRK3Q16288 839 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 PFKFB3Q16875 520 aaPredicted RBP13.7□□□□□ -0.22
LIG3-213ENST00000590630 WWC2Q6AWC2 1192 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 FCHSD1Q86WN1 690 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 SMARCC2Q8TAQ2 1214 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 SCFD2Q8WU76 684 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 GPKOWQ92917 476 aaPredicted RBP eCLIP13.7□□□□□ -0.22
LIG3-213ENST00000590630 LENG1Q96BZ8 264 aaPredicted RBP13.7□□□□□ -0.22
LIG3-213ENST00000590630 RNF26Q9BY78 433 aaPredicted RBP13.7□□□□□ -0.22
LIG3-213ENST00000590630 UPF2Q9HAU5 1272 aaKnown RBP13.7□□□□□ -0.22
LIG3-213ENST00000590630 SPC25Q9HBM1 224 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 NCOA5Q9HCD5 579 aaKnown RBP13.7□□□□□ -0.22
LIG3-213ENST00000590630 PDGFCQ9NRA1 345 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 BARHL2Q9NY43 387 aa13.7□□□□□ -0.22
LIG3-213ENST00000590630 FRMPD4Q14CM0 1322 aa13.69□□□□□ -0.22
LIG3-213ENST00000590630 MEIS2O14770 477 aa13.69□□□□□ -0.22
LIG3-213ENST00000590630 CPLX1O14810 134 aa13.69□□□□□ -0.22
LIG3-213ENST00000590630 PRPF3O43395 683 aaKnown RBP13.69□□□□□ -0.22
LIG3-213ENST00000590630 EIF3JO75822 258 aaKnown RBP13.69□□□□□ -0.22
LIG3-213ENST00000590630 MYCNP04198 464 aaPredicted RBP13.69□□□□□ -0.22
LIG3-213ENST00000590630 NR3C2P08235 984 aa13.69□□□□□ -0.22
LIG3-213ENST00000590630 SCG2P13521 617 aa13.69□□□□□ -0.22
LIG3-213ENST00000590630 CST5P28325 142 aaPredicted RBP13.69□□□□□ -0.22
LIG3-213ENST00000590630 RBM25P49756 843 aaKnown RBP13.69□□□□□ -0.22
LIG3-213ENST00000590630 NEK4P51957 841 aa13.69□□□□□ -0.22
LIG3-213ENST00000590630 AK2P54819 239 aa13.69□□□□□ -0.22
LIG3-213ENST00000590630 NAPAP54920 295 aa13.69□□□□□ -0.22
LIG3-213ENST00000590630 GJA9P57773 515 aa13.69□□□□□ -0.22
LIG3-213ENST00000590630 NKX3-2P78367 333 aa13.69□□□□□ -0.22
LIG3-213ENST00000590630 AKAP17AQ02040 695 aaKnown RBP13.69□□□□□ -0.22
LIG3-213ENST00000590630 GJC2Q5T442 439 aaPredicted RBP13.69□□□□□ -0.22
LIG3-213ENST00000590630 CPLX2Q6PUV4 134 aaKnown RBP13.69□□□□□ -0.22
LIG3-213ENST00000590630 NOL8Q76FK4 1167 aaKnown RBP13.69□□□□□ -0.22
LIG3-213ENST00000590630 PDCD2LQ9BRP1 358 aa13.69□□□□□ -0.22
LIG3-213ENST00000590630 C22orf23Q9BZE7 217 aa13.69□□□□□ -0.22
LIG3-213ENST00000590630 WDR11Q9BZH6 1224 aa13.69□□□□□ -0.22
LIG3-213ENST00000590630 GLT8D2Q9H1C3 349 aa13.69□□□□□ -0.22
LIG3-213ENST00000590630 UPF3AQ9H1J1 476 aaKnown RBP13.69□□□□□ -0.22
LIG3-213ENST00000590630 GNEQ9Y223 722 aaKnown RBP13.69□□□□□ -0.22
LIG3-213ENST00000590630 Q9Y3F1 56 aa13.69□□□□□ -0.22
LIG3-213ENST00000590630 MYH7BA7E2Y1 1941 aa13.68□□□□□ -0.22
LIG3-213ENST00000590630 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.68□□□□□ -0.22
LIG3-213ENST00000590630 STXBP3O00186 592 aa13.68□□□□□ -0.22
LIG3-213ENST00000590630 NKRFO15226 690 aaKnown RBP eCLIP13.68□□□□□ -0.22
LIG3-213ENST00000590630 C6orf222P0C671 652 aaPredicted RBP13.68□□□□□ -0.22
LIG3-213ENST00000590630 SMPD1P17405 629 aa13.68□□□□□ -0.22
LIG3-213ENST00000590630 PGM5Q15124 567 aa13.68□□□□□ -0.22
LIG3-213ENST00000590630 DUSP28Q4G0W2 176 aa13.68□□□□□ -0.22
LIG3-213ENST00000590630 USP17L6PQ6QN14 398 aa13.68□□□□□ -0.22
LIG3-213ENST00000590630 TLK2Q86UE8 772 aa13.68□□□□□ -0.22
LIG3-213ENST00000590630 TRIM22Q8IYM9 498 aa13.68□□□□□ -0.22
LIG3-213ENST00000590630 CCDC12Q8WUD4 166 aaPredicted RBP13.68□□□□□ -0.22
LIG3-213ENST00000590630 PHKBQ93100 1093 aa13.68□□□□□ -0.22
LIG3-213ENST00000590630 LARP6Q9BRS8 491 aaKnown RBP13.68□□□□□ -0.22
LIG3-213ENST00000590630 TSEN34Q9BSV6 310 aaKnown RBP13.68□□□□□ -0.22
LIG3-213ENST00000590630 SLKQ9H2G2 1235 aaPredicted RBP13.68□□□□□ -0.22
LIG3-213ENST00000590630 TPCN1Q9ULQ1 816 aa13.68□□□□□ -0.22
LIG3-213ENST00000590630 MOXD2PA6NHM9 499 aa13.67□□□□□ -0.22
LIG3-213ENST00000590630 PFKFB2O60825 505 aa13.67□□□□□ -0.22
LIG3-213ENST00000590630 STAM2O75886 525 aa13.67□□□□□ -0.22
LIG3-213ENST00000590630 CDKL5O76039 1030 aa13.67□□□□□ -0.22
LIG3-213ENST00000590630 CCND2P30279 289 aa13.67□□□□□ -0.22
LIG3-213ENST00000590630 ADCY7P51828 1080 aa13.67□□□□□ -0.22
LIG3-213ENST00000590630 STK3Q13188 491 aa13.67□□□□□ -0.22
LIG3-213ENST00000590630 TTLL4Q14679 1199 aa13.67□□□□□ -0.22
LIG3-213ENST00000590630 PKN1Q16512 942 aa13.67□□□□□ -0.22
LIG3-213ENST00000590630 TYW1BQ6NUM6 668 aa13.67□□□□□ -0.22
LIG3-213ENST00000590630 VSIG10LQ86VR7 867 aa13.67□□□□□ -0.22
LIG3-213ENST00000590630 PCSK9Q8NBP7 692 aaKnown RBP13.67□□□□□ -0.22
LIG3-213ENST00000590630 KLHDC9Q8NEP7 349 aa13.67□□□□□ -0.22
LIG3-213ENST00000590630 SLC26A6Q9BXS9 759 aa13.67□□□□□ -0.22
LIG3-213ENST00000590630 SENP6Q9GZR1 1112 aaPredicted RBP13.67□□□□□ -0.22
LIG3-213ENST00000590630 AP5M1Q9H0R1 490 aa13.67□□□□□ -0.22
LIG3-213ENST00000590630 RIC8AQ9NPQ8 531 aa13.67□□□□□ -0.22
LIG3-213ENST00000590630 PHF24Q9UPV7 400 aa13.67□□□□□ -0.22
LIG3-213ENST00000590630 ESYT2A0FGR8 921 aa13.66□□□□□ -0.22
LIG3-213ENST00000590630 SPDYE3A6NKU9 549 aa13.66□□□□□ -0.22
LIG3-213ENST00000590630 TXNP10599 105 aaKnown RBP13.66□□□□□ -0.22
LIG3-213ENST00000590630 MYCLP12524 364 aaPredicted RBP13.66□□□□□ -0.22
LIG3-213ENST00000590630 SSRP1Q08945 709 aaKnown RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms