RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 MAP3K10Q02779 954 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 ICA1Q05084 483 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 APOBRQ0VD83 1088 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 STK3Q13188 491 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 TOB2Q14106 344 aaPredicted RBP6.19□□□□□ -1.42
LIG3-210ENST00000588109 SEPT2Q15019 361 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 DBN1Q16643 649 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 CATIPQ7Z7H3 387 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 DGKHQ86XP1 1220 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 ENAHQ8N8S7 591 aaPredicted RBP6.19□□□□□ -1.42
LIG3-210ENST00000588109 IGDCC4Q8TDY8 1250 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 NUP133Q8WUM0 1156 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 CEP95Q96GE4 821 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 ZSCAN31Q96LW9 406 aaPredicted RBP6.19□□□□□ -1.42
LIG3-210ENST00000588109 ALDH8A1Q9H2A2 487 aaPredicted RBP6.19□□□□□ -1.42
LIG3-210ENST00000588109 KANSL2Q9H9L4 492 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 LY9Q9HBG7 655 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.19□□□□□ -1.42
LIG3-210ENST00000588109 PICK1Q9NRD5 415 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 IL17RBQ9NRM6 502 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 TCP11L1Q9NUJ3 509 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 TPCN1Q9ULQ1 816 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 FZD1Q9UP38 647 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 LIMCH1Q9UPQ0 1083 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 PHF24Q9UPV7 400 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 MTMR7Q9Y216 660 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 CSADQ9Y600 493 aa6.19□□□□□ -1.42
LIG3-210ENST00000588109 PLIN4Q96Q06 1357 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 SSC5DA1L4H1 1573 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 GOLGA8AA7E2F4 631 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 PHF20L1A8MW92 1017 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 CTNND1O60716 968 aaKnown RBP6.18□□□□□ -1.42
LIG3-210ENST00000588109 LGR5O75473 907 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 USP2O75604 605 aaPredicted RBP6.18□□□□□ -1.42
LIG3-210ENST00000588109 DKK1O94907 266 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 CALM1P0DP23 149 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 CALM2P0DP24 149 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 CALM3P0DP25 149 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 VSIG8P0DPA2 414 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 TOP1P11387 765 aaKnown RBP6.18□□□□□ -1.42
LIG3-210ENST00000588109 EEF2P13639 858 aaKnown RBP6.18□□□□□ -1.42
LIG3-210ENST00000588109 INPP5BP32019 993 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 GMPRP36959 345 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 LIFRP42702 1097 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 METAP2P50579 478 aaKnown RBP eCLIP6.18□□□□□ -1.42
LIG3-210ENST00000588109 EPHA4P54764 986 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 ELOAQ14241 798 aaKnown RBP6.18□□□□□ -1.42
LIG3-210ENST00000588109 RRP1BQ14684 758 aaKnown RBP6.18□□□□□ -1.42
LIG3-210ENST00000588109 LBRQ14739 615 aaKnown RBP6.18□□□□□ -1.42
LIG3-210ENST00000588109 SEC23AQ15436 765 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 SHROOM1Q2M3G4 852 aaPredicted RBP6.18□□□□□ -1.42
LIG3-210ENST00000588109 ARMC9Q7Z3E5 817 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 SGMS1Q86VZ5 419 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 MICU3Q86XE3 530 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 RAB11FIP4Q86YS3 637 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 CLEC10AQ8IUN9 316 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 CCDC144CPQ8IYA2 1237 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 SCYL3Q8IZE3 742 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 ZNF654Q8IZM8 581 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 LRRC47Q8N1G4 583 aaKnown RBP6.18□□□□□ -1.42
LIG3-210ENST00000588109 FBXL16Q8N461 479 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 ZKSCAN4Q969J2 545 aaPredicted RBP6.18□□□□□ -1.42
LIG3-210ENST00000588109 GTPBP3Q969Y2 492 aaKnown RBP6.18□□□□□ -1.42
LIG3-210ENST00000588109 CHMP4CQ96CF2 233 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 KLRG1Q96E93 195 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 TMX3Q96JJ7 454 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 FEZ1Q99689 392 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 AGXT2Q9BYV1 514 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 SLKQ9H2G2 1235 aaPredicted RBP6.18□□□□□ -1.42
LIG3-210ENST00000588109 SH2D4AQ9H788 454 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 AS3MTQ9HBK9 375 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 SH2B1Q9NRF2 756 aaPredicted RBP6.18□□□□□ -1.42
LIG3-210ENST00000588109 GINM1Q9NU53 330 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 CUEDC1Q9NWM3 386 aaPredicted RBP6.18□□□□□ -1.42
LIG3-210ENST00000588109 MTMR4Q9NYA4 1195 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 ZDHHC3Q9NYG2 299 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 CLIP2Q9UDT6 1046 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 BRPF3Q9ULD4 1205 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 ISY1Q9ULR0 285 aaKnown RBP6.18□□□□□ -1.42
LIG3-210ENST00000588109 HCN4Q9Y3Q4 1203 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 USP3Q9Y6I4 520 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 ATAD5Q96QE3 1844 aa6.18□□□□□ -1.42
LIG3-210ENST00000588109 IGKV6D-41A0A0C4DH26 115 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 CPLX1O14810 134 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 DHX16O60231 1041 aaKnown RBP6.17□□□□□ -1.42
LIG3-210ENST00000588109 DDAH1O94760 285 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 CELF2O95319 508 aaKnown RBP6.17□□□□□ -1.42
LIG3-210ENST00000588109 LARGE1O95461 756 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 RXRAP19793 462 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 PDIA3P30101 505 aaKnown RBP6.17□□□□□ -1.42
LIG3-210ENST00000588109 KIF5BP33176 963 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 CCT2P78371 535 aaKnown RBP6.17□□□□□ -1.42
LIG3-210ENST00000588109 JAG1P78504 1218 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 ME3Q16798 604 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 RTN1Q16799 776 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 RCSD1Q6JBY9 416 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 FIGNL1Q6PIW4 674 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 CPLX2Q6PUV4 134 aaKnown RBP6.17□□□□□ -1.42
LIG3-210ENST00000588109 APOA5Q6Q788 366 aa6.17□□□□□ -1.42
LIG3-210ENST00000588109 MOB2Q70IA6 237 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms