RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 SMPD1P17405 629 aa22.48■■□□□ 1.19
SS18-209ENST00000578595 LRRC26Q2I0M4 334 aa22.48■■□□□ 1.19
SS18-209ENST00000578595 TAPT1Q6NXT6 567 aa22.48■■□□□ 1.19
SS18-209ENST00000578595 GPKOWQ92917 476 aaPredicted RBP eCLIP22.48■■□□□ 1.19
SS18-209ENST00000578595 VTI1AQ96AJ9 217 aa22.48■■□□□ 1.19
SS18-209ENST00000578595 WDR11Q9BZH6 1224 aa22.48■■□□□ 1.19
SS18-209ENST00000578595 ZSWIM6Q9HCJ5 1215 aa22.48■■□□□ 1.19
SS18-209ENST00000578595 PXMP2Q9NR77 195 aa22.48■■□□□ 1.19
SS18-209ENST00000578595 ATP11BQ9Y2G3 1177 aa22.48■■□□□ 1.19
SS18-209ENST00000578595 CCDC196A0A1B0GTZ2 297 aa22.47■■□□□ 1.19
SS18-209ENST00000578595 DYNC1LI2O43237 492 aaPredicted RBP22.47■■□□□ 1.19
SS18-209ENST00000578595 PTGS1P23219 599 aa22.47■■□□□ 1.19
SS18-209ENST00000578595 EDNRBP24530 442 aa22.47■■□□□ 1.19
SS18-209ENST00000578595 IRX5P78411 483 aaPredicted RBP22.47■■□□□ 1.19
SS18-209ENST00000578595 BEX3Q00994 111 aa22.47■■□□□ 1.19
SS18-209ENST00000578595 STXBP2Q15833 593 aa22.47■■□□□ 1.19
SS18-209ENST00000578595 GNASQ5JWF2 1037 aa22.47■■□□□ 1.19
SS18-209ENST00000578595 IQSEC1Q6DN90 963 aa22.47■■□□□ 1.19
SS18-209ENST00000578595 SEPT14Q6ZU15 432 aa22.47■■□□□ 1.19
SS18-209ENST00000578595 SAMD3Q8N6K7 520 aa22.47■■□□□ 1.19
SS18-209ENST00000578595 MAP3K20Q9NYL2 800 aaKnown RBP22.47■■□□□ 1.19
SS18-209ENST00000578595 ZMYND8Q9ULU4 1186 aaPredicted RBP22.47■■□□□ 1.19
SS18-209ENST00000578595 DOCK5Q9H7D0 1870 aa22.47■■□□□ 1.19
SS18-209ENST00000578595 CDC27P30260 824 aa22.46■■□□□ 1.19
SS18-209ENST00000578595 RCAN1P53805 252 aa22.46■■□□□ 1.19
SS18-209ENST00000578595 KCNA10Q16322 511 aa22.46■■□□□ 1.19
SS18-209ENST00000578595 PCSK9Q8NBP7 692 aaKnown RBP22.46■■□□□ 1.19
SS18-209ENST00000578595 SCFD2Q8WU76 684 aa22.46■■□□□ 1.19
SS18-209ENST00000578595 IWS1Q96ST2 819 aa22.46■■□□□ 1.19
SS18-209ENST00000578595 PDRG1Q9NUG6 133 aa22.46■■□□□ 1.19
SS18-209ENST00000578595 PHF24Q9UPV7 400 aa22.46■■□□□ 1.19
SS18-209ENST00000578595 A0A1W2PQ45 241 aaPredicted RBP22.45■■□□□ 1.18
SS18-209ENST00000578595 A0A1W2PQY0 241 aa22.45■■□□□ 1.18
SS18-209ENST00000578595 NR3C2P08235 984 aa22.45■■□□□ 1.18
SS18-209ENST00000578595 TXNP10599 105 aaKnown RBP22.45■■□□□ 1.18
SS18-209ENST00000578595 ADD1P35611 737 aaKnown RBP22.45■■□□□ 1.18
SS18-209ENST00000578595 ACLYP53396 1101 aa22.45■■□□□ 1.18
SS18-209ENST00000578595 NAPAP54920 295 aa22.45■■□□□ 1.18
SS18-209ENST00000578595 GJA9P57773 515 aa22.45■■□□□ 1.18
SS18-209ENST00000578595 RTP1P59025 263 aa22.45■■□□□ 1.18
SS18-209ENST00000578595 CCT2P78371 535 aaKnown RBP22.45■■□□□ 1.18
SS18-209ENST00000578595 OR6J1Q8NGC5 347 aa22.45■■□□□ 1.18
SS18-209ENST00000578595 LARP6Q9BRS8 491 aaKnown RBP22.45■■□□□ 1.18
SS18-209ENST00000578595 TM6SF1Q9BZW5 370 aa22.45■■□□□ 1.18
SS18-209ENST00000578595 UPF3AQ9H1J1 476 aaKnown RBP22.45■■□□□ 1.18
SS18-209ENST00000578595 STARD7Q9NQZ5 370 aa22.45■■□□□ 1.18
SS18-209ENST00000578595 V9GY48 417 aaPredicted RBP22.45■■□□□ 1.18
SS18-209ENST00000578595 SYN1P17600 705 aa22.44■■□□□ 1.18
SS18-209ENST00000578595 AKAP17AQ02040 695 aaKnown RBP22.44■■□□□ 1.18
SS18-209ENST00000578595 TTLL4Q14679 1199 aa22.44■■□□□ 1.18
SS18-209ENST00000578595 FSCN1Q16658 493 aaKnown RBP22.44■■□□□ 1.18
SS18-209ENST00000578595 DUSP28Q4G0W2 176 aa22.44■■□□□ 1.18
SS18-209ENST00000578595 TMEM63BQ5T3F8 832 aa22.44■■□□□ 1.18
SS18-209ENST00000578595 USP17L6PQ6QN14 398 aa22.44■■□□□ 1.18
SS18-209ENST00000578595 SLC39A5Q6ZMH5 540 aa22.44■■□□□ 1.18
SS18-209ENST00000578595 GLT1D1Q96MS3 346 aa22.44■■□□□ 1.18
SS18-209ENST00000578595 TSEN34Q9BSV6 310 aaKnown RBP22.44■■□□□ 1.18
SS18-209ENST00000578595 GNEQ9Y223 722 aaKnown RBP22.44■■□□□ 1.18
SS18-209ENST00000578595 MOXD2PA6NHM9 499 aa22.43■■□□□ 1.18
SS18-209ENST00000578595 ZEB2O60315 1214 aa22.43■■□□□ 1.18
SS18-209ENST00000578595 PPFIA3O75145 1194 aa22.43■■□□□ 1.18
SS18-209ENST00000578595 ASGR1P07306 291 aa22.43■■□□□ 1.18
SS18-209ENST00000578595 CST5P28325 142 aaPredicted RBP22.43■■□□□ 1.18
SS18-209ENST00000578595 CCND2P30279 289 aa22.43■■□□□ 1.18
SS18-209ENST00000578595 GHRHRQ02643 423 aa22.43■■□□□ 1.18
SS18-209ENST00000578595 STK3Q13188 491 aa22.43■■□□□ 1.18
SS18-209ENST00000578595 TOB2Q14106 344 aaPredicted RBP22.43■■□□□ 1.18
SS18-209ENST00000578595 WWC2Q6AWC2 1192 aa22.43■■□□□ 1.18
SS18-209ENST00000578595 KLHDC9Q8NEP7 349 aa22.43■■□□□ 1.18
SS18-209ENST00000578595 ZFP91Q96JP5 570 aaPredicted RBP22.43■■□□□ 1.18
SS18-209ENST00000578595 PDCD2LQ9BRP1 358 aa22.43■■□□□ 1.18
SS18-209ENST00000578595 AGXT2Q9BYV1 514 aa22.43■■□□□ 1.18
SS18-209ENST00000578595 PSTPIP2Q9H939 334 aa22.43■■□□□ 1.18
SS18-209ENST00000578595 MRVI1Q9Y6F6 885 aa22.43■■□□□ 1.18
SS18-209ENST00000578595 SEC24BO95487 1268 aa22.42■■□□□ 1.18
SS18-209ENST00000578595 ANAPC15P60006 121 aa22.42■■□□□ 1.18
SS18-209ENST00000578595 PGM5Q15124 567 aa22.42■■□□□ 1.18
SS18-209ENST00000578595 UBE2SQ16763 222 aa22.42■■□□□ 1.18
SS18-209ENST00000578595 TRIM60Q495X7 471 aa22.42■■□□□ 1.18
SS18-209ENST00000578595 IL31RAQ8NI17 732 aa22.42■■□□□ 1.18
SS18-209ENST00000578595 COPS5Q92905 334 aa22.42■■□□□ 1.18
SS18-209ENST00000578595 NCOA5Q9HCD5 579 aaKnown RBP22.42■■□□□ 1.18
SS18-209ENST00000578595 PRDM5Q9NQX1 630 aaPredicted RBP22.42■■□□□ 1.18
SS18-209ENST00000578595 FAM217BQ9NTX9 383 aaPredicted RBP22.42■■□□□ 1.18
SS18-209ENST00000578595 PRKAG2Q9UGJ0 569 aa22.42■■□□□ 1.18
SS18-209ENST00000578595 NKRFO15226 690 aaKnown RBP eCLIP22.41■■□□□ 1.18
SS18-209ENST00000578595 PDIA3P30101 505 aaKnown RBP22.41■■□□□ 1.18
SS18-209ENST00000578595 BRDTQ58F21 947 aaPredicted RBP22.41■■□□□ 1.18
SS18-209ENST00000578595 FBXL16Q8N461 479 aa22.41■■□□□ 1.18
SS18-209ENST00000578595 PHKBQ93100 1093 aa22.41■■□□□ 1.18
SS18-209ENST00000578595 TRIOBPQ9H2D6 2365 aa22.4■■□□□ 1.18
SS18-209ENST00000578595 RBM47A0AV96 593 aaKnown RBP22.4■■□□□ 1.18
SS18-209ENST00000578595 SPDYE3A6NKU9 549 aa22.4■■□□□ 1.18
SS18-209ENST00000578595 CPLX1O14810 134 aa22.4■■□□□ 1.18
SS18-209ENST00000578595 PQBP1O60828 265 aaKnown RBP22.4■■□□□ 1.18
SS18-209ENST00000578595 EIF3JO75822 258 aaKnown RBP22.4■■□□□ 1.18
SS18-209ENST00000578595 ARIH2O95376 493 aa22.4■■□□□ 1.18
SS18-209ENST00000578595 MYL3P08590 195 aa22.4■■□□□ 1.18
SS18-209ENST00000578595 CPT1AP50416 773 aa22.4■■□□□ 1.18
SS18-209ENST00000578595 CXCL17Q6UXB2 119 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms