RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 FCHSD1Q86WN1 690 aa17.62■□□□□ 0.41
SMG6-220ENST00000576218 SRBD1Q8N5C6 995 aaKnown RBP17.62■□□□□ 0.41
SMG6-220ENST00000576218 SMARCC2Q8TAQ2 1214 aa17.62■□□□□ 0.41
SMG6-220ENST00000576218 SCFD2Q8WU76 684 aa17.62■□□□□ 0.41
SMG6-220ENST00000576218 BRF1Q92994 677 aa17.62■□□□□ 0.41
SMG6-220ENST00000576218 GLT1D1Q96MS3 346 aa17.62■□□□□ 0.41
SMG6-220ENST00000576218 PRDM5Q9NQX1 630 aaPredicted RBP17.62■□□□□ 0.41
SMG6-220ENST00000576218 MAP3K20Q9NYL2 800 aaKnown RBP17.62■□□□□ 0.41
SMG6-220ENST00000576218 BAZ2BQ9UIF8 2168 aaKnown RBP17.62■□□□□ 0.41
SMG6-220ENST00000576218 LRRC37A2A6NM11 1700 aa17.61■□□□□ 0.41
SMG6-220ENST00000576218 LCTP09848 1927 aa17.61■□□□□ 0.41
SMG6-220ENST00000576218 MYADML2A6NDP7 307 aa17.61■□□□□ 0.41
SMG6-220ENST00000576218 MYCLP12524 364 aaPredicted RBP17.61■□□□□ 0.41
SMG6-220ENST00000576218 RPS6KB1P23443 525 aa17.61■□□□□ 0.41
SMG6-220ENST00000576218 METAP2P50579 478 aaKnown RBP eCLIP17.61■□□□□ 0.41
SMG6-220ENST00000576218 HSD17B4P51659 736 aa17.61■□□□□ 0.41
SMG6-220ENST00000576218 BEX3Q00994 111 aa17.61■□□□□ 0.41
SMG6-220ENST00000576218 TTLL4Q14679 1199 aa17.61■□□□□ 0.41
SMG6-220ENST00000576218 FSCN1Q16658 493 aaKnown RBP17.61■□□□□ 0.41
SMG6-220ENST00000576218 TAPT1Q6NXT6 567 aa17.61■□□□□ 0.41
SMG6-220ENST00000576218 SEPT14Q6ZU15 432 aa17.61■□□□□ 0.41
SMG6-220ENST00000576218 HEATR3Q7Z4Q2 680 aa17.61■□□□□ 0.41
SMG6-220ENST00000576218 SAMD3Q8N6K7 520 aa17.61■□□□□ 0.41
SMG6-220ENST00000576218 KCNB2Q92953 911 aa17.61■□□□□ 0.41
SMG6-220ENST00000576218 IWS1Q96ST2 819 aa17.61■□□□□ 0.41
SMG6-220ENST00000576218 COL20A1Q9P218 1284 aa17.61■□□□□ 0.41
SMG6-220ENST00000576218 CCDC196A0A1B0GTZ2 297 aa17.6■□□□□ 0.41
SMG6-220ENST00000576218 hCG_1642624A0A1W2PR95 340 aa17.6■□□□□ 0.41
SMG6-220ENST00000576218 ASGR1P07306 291 aa17.6■□□□□ 0.41
SMG6-220ENST00000576218 EDNRBP24530 442 aa17.6■□□□□ 0.41
SMG6-220ENST00000576218 CST5P28325 142 aaPredicted RBP17.6■□□□□ 0.41
SMG6-220ENST00000576218 APOBRQ0VD83 1088 aa17.6■□□□□ 0.41
SMG6-220ENST00000576218 TRIM60Q495X7 471 aa17.6■□□□□ 0.41
SMG6-220ENST00000576218 DUSP28Q4G0W2 176 aa17.6■□□□□ 0.41
SMG6-220ENST00000576218 OR6J1Q8NGC5 347 aa17.6■□□□□ 0.41
SMG6-220ENST00000576218 USP26Q9BXU7 913 aa17.6■□□□□ 0.41
SMG6-220ENST00000576218 UPF3AQ9H1J1 476 aaKnown RBP17.6■□□□□ 0.41
SMG6-220ENST00000576218 PXMP2Q9NR77 195 aa17.6■□□□□ 0.41
SMG6-220ENST00000576218 BRPF3Q9ULD4 1205 aa17.6■□□□□ 0.41
SMG6-220ENST00000576218 CYP46A1Q9Y6A2 500 aa17.6■□□□□ 0.41
SMG6-220ENST00000576218 NKRFO15226 690 aaKnown RBP eCLIP17.59■□□□□ 0.41
SMG6-220ENST00000576218 PQBP1O60828 265 aaKnown RBP17.59■□□□□ 0.41
SMG6-220ENST00000576218 TXNP10599 105 aaKnown RBP17.59■□□□□ 0.41
SMG6-220ENST00000576218 KLHDC9Q8NEP7 349 aa17.59■□□□□ 0.41
SMG6-220ENST00000576218 LBHD1Q9BQE6 289 aaPredicted RBP17.59■□□□□ 0.41
SMG6-220ENST00000576218 GNEQ9Y223 722 aaKnown RBP17.59■□□□□ 0.41
SMG6-220ENST00000576218 ALPK3Q96L96 1907 aa17.59■□□□□ 0.41
SMG6-220ENST00000576218 OPLAHO14841 1288 aa17.58■□□□□ 0.4
SMG6-220ENST00000576218 NR3C2P08235 984 aa17.58■□□□□ 0.4
SMG6-220ENST00000576218 CPT1AP50416 773 aa17.58■□□□□ 0.4
SMG6-220ENST00000576218 RCAN1P53805 252 aa17.58■□□□□ 0.4
SMG6-220ENST00000576218 IRX5P78411 483 aaPredicted RBP17.58■□□□□ 0.4
SMG6-220ENST00000576218 COLQQ9Y215 455 aaPredicted RBP17.58■□□□□ 0.4
SMG6-220ENST00000576218 Q9Y3F1 56 aa17.58■□□□□ 0.4
SMG6-220ENST00000576218 MRVI1Q9Y6F6 885 aa17.58■□□□□ 0.4
SMG6-220ENST00000576218 CNTNAP5Q8WYK1 1306 aa17.57■□□□□ 0.4
SMG6-220ENST00000576218 A0A0U1RQG5 324 aaPredicted RBP17.57■□□□□ 0.4
SMG6-220ENST00000576218 EIF3JO75822 258 aaKnown RBP17.57■□□□□ 0.4
SMG6-220ENST00000576218 CABYRO75952 493 aa17.57■□□□□ 0.4
SMG6-220ENST00000576218 MYL3P08590 195 aa17.57■□□□□ 0.4
SMG6-220ENST00000576218 CCND2P30279 289 aa17.57■□□□□ 0.4
SMG6-220ENST00000576218 NAPAP54920 295 aa17.57■□□□□ 0.4
SMG6-220ENST00000576218 AKAP17AQ02040 695 aaKnown RBP17.57■□□□□ 0.4
SMG6-220ENST00000576218 RUFY3Q7L099 469 aa17.57■□□□□ 0.4
SMG6-220ENST00000576218 GPKOWQ92917 476 aaPredicted RBP eCLIP17.57■□□□□ 0.4
SMG6-220ENST00000576218 PSTPIP2Q9H939 334 aa17.57■□□□□ 0.4
SMG6-220ENST00000576218 ELP1O95163 1332 aa17.56■□□□□ 0.4
SMG6-220ENST00000576218 MROH7Q68CQ1 1323 aa17.56■□□□□ 0.4
SMG6-220ENST00000576218 DCDC2CA8MYV0 355 aa17.56■□□□□ 0.4
SMG6-220ENST00000576218 PTGS1P23219 599 aa17.56■□□□□ 0.4
SMG6-220ENST00000576218 GHRHRQ02643 423 aa17.56■□□□□ 0.4
SMG6-220ENST00000576218 PGM5Q15124 567 aa17.56■□□□□ 0.4
SMG6-220ENST00000576218 CXCL17Q6UXB2 119 aa17.56■□□□□ 0.4
SMG6-220ENST00000576218 PDCD2LQ9BRP1 358 aa17.56■□□□□ 0.4
SMG6-220ENST00000576218 UPF3BQ9BZI7 483 aaKnown RBP17.56■□□□□ 0.4
SMG6-220ENST00000576218 POLR3EQ9NVU0 708 aa17.56■□□□□ 0.4
SMG6-220ENST00000576218 RBM47A0AV96 593 aaKnown RBP17.55■□□□□ 0.4
SMG6-220ENST00000576218 SPDYE3A6NKU9 549 aa17.55■□□□□ 0.4
SMG6-220ENST00000576218 TLR3O15455 904 aaKnown RBP17.55■□□□□ 0.4
SMG6-220ENST00000576218 GH1P01241 217 aa17.55■□□□□ 0.4
SMG6-220ENST00000576218 TLE2Q04725 743 aa17.55■□□□□ 0.4
SMG6-220ENST00000576218 SNX17Q15036 470 aa17.55■□□□□ 0.4
SMG6-220ENST00000576218 GNPTABQ3T906 1256 aa17.55■□□□□ 0.4
SMG6-220ENST00000576218 TMEM63BQ5T3F8 832 aa17.55■□□□□ 0.4
SMG6-220ENST00000576218 CCSAPQ6IQ19 270 aaPredicted RBP17.55■□□□□ 0.4
SMG6-220ENST00000576218 USP17L6PQ6QN14 398 aa17.55■□□□□ 0.4
SMG6-220ENST00000576218 COPS5Q92905 334 aa17.55■□□□□ 0.4
SMG6-220ENST00000576218 EHMT1Q9H9B1 1298 aa17.55■□□□□ 0.4
SMG6-220ENST00000576218 ZSWIM6Q9HCJ5 1215 aa17.55■□□□□ 0.4
SMG6-220ENST00000576218 PDRG1Q9NUG6 133 aa17.55■□□□□ 0.4
SMG6-220ENST00000576218 V9GY48 417 aaPredicted RBP17.55■□□□□ 0.4
SMG6-220ENST00000576218 CLTBP09497 229 aa17.54■□□□□ 0.4
SMG6-220ENST00000576218 CDC27P30260 824 aa17.54■□□□□ 0.4
SMG6-220ENST00000576218 MAGEA10P43363 369 aaPredicted RBP17.54■□□□□ 0.4
SMG6-220ENST00000576218 CHMP4BP1P59074 171 aa17.54■□□□□ 0.4
SMG6-220ENST00000576218 MDM2Q00987 491 aaPredicted RBP17.54■□□□□ 0.4
SMG6-220ENST00000576218 LY6KQ17RY6 165 aa17.54■□□□□ 0.4
SMG6-220ENST00000576218 C1orf53Q5VUE5 145 aa17.54■□□□□ 0.4
SMG6-220ENST00000576218 KCNV1Q6PIU1 500 aa17.54■□□□□ 0.4
SMG6-220ENST00000576218 TM6SF1Q9BZW5 370 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms