RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 GOLPH3LQ9H4A5 285 aa15.53■□□□□ 0.08
CCDC40-209ENST00000573474 RBPJLQ9UBG7 517 aa15.53■□□□□ 0.08
CCDC40-209ENST00000573474 FBXO40Q9UH90 709 aa15.53■□□□□ 0.08
CCDC40-209ENST00000573474 DDX25Q9UHL0 483 aaKnown RBP15.53■□□□□ 0.08
CCDC40-209ENST00000573474 FAM237AA0A1B0GTK4 181 aa15.52■□□□□ 0.08
CCDC40-209ENST00000573474 MANSC4A6NHS7 340 aaPredicted RBP15.52■□□□□ 0.08
CCDC40-209ENST00000573474 TMEM88BA6NKF7 163 aa15.52■□□□□ 0.08
CCDC40-209ENST00000573474 TDP2O95551 362 aa15.52■□□□□ 0.08
CCDC40-209ENST00000573474 SLC25A27O95847 323 aa15.52■□□□□ 0.08
CCDC40-209ENST00000573474 CIITAP33076 1130 aa15.52■□□□□ 0.08
CCDC40-209ENST00000573474 RPS6P62753 249 aaKnown RBP15.52■□□□□ 0.08
CCDC40-209ENST00000573474 FAM160A1Q05DH4 1040 aa15.52■□□□□ 0.08
CCDC40-209ENST00000573474 BAATQ14032 418 aaPredicted RBP15.52■□□□□ 0.08
CCDC40-209ENST00000573474 CALCRLQ16602 461 aa15.52■□□□□ 0.08
CCDC40-209ENST00000573474 SHC4Q6S5L8 630 aa15.52■□□□□ 0.08
CCDC40-209ENST00000573474 NSMFQ6X4W1 530 aa15.52■□□□□ 0.08
CCDC40-209ENST00000573474 DTHD1Q6ZMT9 781 aa15.52■□□□□ 0.08
CCDC40-209ENST00000573474 ENGASEQ8NFI3 743 aa15.52■□□□□ 0.08
CCDC40-209ENST00000573474 CSRNP2Q9H175 543 aa15.52■□□□□ 0.08
CCDC40-209ENST00000573474 DDX19AQ9NUU7 478 aaKnown RBP15.52■□□□□ 0.08
CCDC40-209ENST00000573474 DACT1Q9NYF0 836 aa15.52■□□□□ 0.08
CCDC40-209ENST00000573474 FAM13BQ9NYF5 915 aa15.52■□□□□ 0.08
CCDC40-209ENST00000573474 RPTORQ8N122 1335 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 A0A1B0GVL5 298 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 VWA3AA6NCI4 1184 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 SLC37A4O43826 429 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 NR1I2O75469 434 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 SLC10A3P09131 477 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 ZNF76P36508 570 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 LONP1P36776 959 aaKnown RBP15.51■□□□□ 0.07
CCDC40-209ENST00000573474 NDUFA8P51970 172 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 GRIN1Q05586 938 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 IL17AQ16552 155 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 Q4G0T1 1027 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 CCDC183Q5T5S1 534 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 POTEDQ86YR6 584 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 CCDC102AQ96A19 550 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 HHIPL1Q96JK4 782 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 MTMR9Q96QG7 549 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 PTPN18Q99952 460 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 MOV10L1Q9BXT6 1211 aaKnown RBP15.51■□□□□ 0.07
CCDC40-209ENST00000573474 GZF1Q9H116 711 aaPredicted RBP15.51■□□□□ 0.07
CCDC40-209ENST00000573474 TMEM63CQ9P1W3 806 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 COL20A1Q9P218 1284 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 ABT1Q9ULW3 272 aaKnown RBP15.51■□□□□ 0.07
CCDC40-209ENST00000573474 COL11A1P12107 1806 aaPredicted RBP15.51■□□□□ 0.07
CCDC40-209ENST00000573474 A0A0G2JMZ2 1700 aa15.51■□□□□ 0.07
CCDC40-209ENST00000573474 CYP2C8P10632 490 aa15.5■□□□□ 0.07
CCDC40-209ENST00000573474 PFKFB1P16118 471 aa15.5■□□□□ 0.07
CCDC40-209ENST00000573474 YY1P25490 414 aa15.5■□□□□ 0.07
CCDC40-209ENST00000573474 GCLCP48506 637 aaPredicted RBP15.5■□□□□ 0.07
CCDC40-209ENST00000573474 INHBEP58166 350 aa15.5■□□□□ 0.07
CCDC40-209ENST00000573474 SNW1Q13573 536 aaKnown RBP15.5■□□□□ 0.07
CCDC40-209ENST00000573474 SLC30A10Q6XR72 485 aa15.5■□□□□ 0.07
CCDC40-209ENST00000573474 NCAPG2Q86XI2 1143 aa15.5■□□□□ 0.07
CCDC40-209ENST00000573474 FMR1NBQ8N0W7 255 aaPredicted RBP15.5■□□□□ 0.07
CCDC40-209ENST00000573474 FAM43AQ8N2R8 423 aa15.5■□□□□ 0.07
CCDC40-209ENST00000573474 SMCR8Q8TEV9 937 aaPredicted RBP15.5■□□□□ 0.07
CCDC40-209ENST00000573474 TAAR1Q96RJ0 339 aa15.5■□□□□ 0.07
CCDC40-209ENST00000573474 PARK7Q99497 189 aaKnown RBP15.5■□□□□ 0.07
CCDC40-209ENST00000573474 TXNRD2Q9NNW7 524 aa15.5■□□□□ 0.07
CCDC40-209ENST00000573474 CYP39A1Q9NYL5 469 aa15.5■□□□□ 0.07
CCDC40-209ENST00000573474 HPSEQ9Y251 543 aa15.5■□□□□ 0.07
CCDC40-209ENST00000573474 PFASO15067 1338 aa15.49■□□□□ 0.07
CCDC40-209ENST00000573474 FRMPD4Q14CM0 1322 aa15.49■□□□□ 0.07
CCDC40-209ENST00000573474 TBX3O15119 743 aa15.49■□□□□ 0.07
CCDC40-209ENST00000573474 MARCH6O60337 910 aa15.49■□□□□ 0.07
CCDC40-209ENST00000573474 PEX10O60683 326 aa15.49■□□□□ 0.07
CCDC40-209ENST00000573474 LETM1O95202 739 aaPredicted RBP15.49■□□□□ 0.07
CCDC40-209ENST00000573474 SYKP43405 635 aa15.49■□□□□ 0.07
CCDC40-209ENST00000573474 ERVK-9P63128 1117 aa15.49■□□□□ 0.07
CCDC40-209ENST00000573474 ERVK-24P63145 666 aa15.49■□□□□ 0.07
CCDC40-209ENST00000573474 PRR16Q569H4 304 aa15.49■□□□□ 0.07
CCDC40-209ENST00000573474 SPECC1Q5M775 1068 aa15.49■□□□□ 0.07
CCDC40-209ENST00000573474 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.49■□□□□ 0.07
CCDC40-209ENST00000573474 SHCBP1Q8NEM2 672 aa15.49■□□□□ 0.07
CCDC40-209ENST00000573474 GPRC5AQ8NFJ5 357 aa15.49■□□□□ 0.07
CCDC40-209ENST00000573474 RMDN3Q96TC7 470 aa15.49■□□□□ 0.07
CCDC40-209ENST00000573474 ZCCHC17Q9NP64 241 aaKnown RBP15.49■□□□□ 0.07
CCDC40-209ENST00000573474 A1CFQ9NQ94 594 aaKnown RBP15.49■□□□□ 0.07
CCDC40-209ENST00000573474 KCNH3Q9ULD8 1083 aa15.49■□□□□ 0.07
CCDC40-209ENST00000573474 FAM86B1E9PN63 330 aa15.48■□□□□ 0.07
CCDC40-209ENST00000573474 KINO60870 393 aaKnown RBP15.48■□□□□ 0.07
CCDC40-209ENST00000573474 FAM86B2P0C5J1 330 aa15.48■□□□□ 0.07
CCDC40-209ENST00000573474 ERCC3P19447 782 aa15.48■□□□□ 0.07
CCDC40-209ENST00000573474 TXKP42681 527 aa15.48■□□□□ 0.07
CCDC40-209ENST00000573474 FXR2P51116 673 aaKnown RBP eCLIP15.48■□□□□ 0.07
CCDC40-209ENST00000573474 UBXN2AP68543 259 aa15.48■□□□□ 0.07
CCDC40-209ENST00000573474 CCNA1P78396 465 aa15.48■□□□□ 0.07
CCDC40-209ENST00000573474 TMEM266Q2M3C6 531 aa15.48■□□□□ 0.07
CCDC40-209ENST00000573474 Q3C1V9 767 aa15.48■□□□□ 0.07
CCDC40-209ENST00000573474 ZSCAN23Q3MJ62 389 aa15.48■□□□□ 0.07
CCDC40-209ENST00000573474 ARHGEF16Q5VV41 709 aa15.48■□□□□ 0.07
CCDC40-209ENST00000573474 PCNX4Q63HM2 1172 aa15.48■□□□□ 0.07
CCDC40-209ENST00000573474 XRRA1Q6P2D8 792 aa15.48■□□□□ 0.07
CCDC40-209ENST00000573474 SLFN12Q8IYM2 578 aa15.48■□□□□ 0.07
CCDC40-209ENST00000573474 ANKRD35Q8N283 1001 aa15.48■□□□□ 0.07
CCDC40-209ENST00000573474 SYMPKQ92797 1274 aaKnown RBP15.48■□□□□ 0.07
CCDC40-209ENST00000573474 HAS1Q92839 578 aa15.48■□□□□ 0.07
CCDC40-209ENST00000573474 AK8Q96MA6 479 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms