RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 SYNRGQ9UMZ2 1314 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 MYH1P12882 1939 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 TERTO14746 1132 aaKnown RBP7.1□□□□□ -1.27
VPS53-208ENST00000570650 TLR3O15455 904 aaKnown RBP7.1□□□□□ -1.27
VPS53-208ENST00000570650 SRGAP3O43295 1099 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 SLC25A27O95847 323 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 FGBP02675 491 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 TAL1P17542 331 aaPredicted RBP7.1□□□□□ -1.27
VPS53-208ENST00000570650 CST5P28325 142 aaPredicted RBP7.1□□□□□ -1.27
VPS53-208ENST00000570650 GUCY1A2P33402 732 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 CDK7P50613 346 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 DYNLL1P63167 89 aaKnown RBP7.1□□□□□ -1.27
VPS53-208ENST00000570650 NFX1Q12986 1120 aaKnown RBP7.1□□□□□ -1.27
VPS53-208ENST00000570650 SEPT2Q15019 361 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 KCNA10Q16322 511 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 ZNF792Q3KQV3 632 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 OXLD1Q5BKU9 147 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 TTC39AQ5SRH9 613 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 LCE2AQ5TA79 106 aaPredicted RBP7.1□□□□□ -1.27
VPS53-208ENST00000570650 LCE2CQ5TA81 110 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 CCSAPQ6IQ19 270 aaPredicted RBP7.1□□□□□ -1.27
VPS53-208ENST00000570650 TTC6Q86TZ1 520 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 CERS3Q8IU89 383 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 RNF217Q8TC41 542 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 VTI1AQ96AJ9 217 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 SNX27Q96L92 541 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 MRS2Q9HD23 443 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 POLMQ9NP87 494 aaPredicted RBP7.1□□□□□ -1.27
VPS53-208ENST00000570650 C11orf16Q9NQ32 467 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 FAM184BQ9ULE4 1060 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 COG5Q9UP83 839 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 CNPY2Q9Y2B0 182 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 PIEZO1Q92508 2521 aa7.1□□□□□ -1.27
VPS53-208ENST00000570650 ZNFX1Q9P2E3 1918 aaKnown RBP7.09□□□□□ -1.27
VPS53-208ENST00000570650 MUC6Q6W4X9 2439 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 A0A0U1RQG5 324 aaPredicted RBP7.09□□□□□ -1.27
VPS53-208ENST00000570650 A0A1W2PRG0 241 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 MYADML2A6NDP7 307 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 FAM86C2PA6NEL3 165 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 A6NJR5 290 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 ARVCFO00192 962 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 DUSP11O75319 330 aaKnown RBP7.09□□□□□ -1.27
VPS53-208ENST00000570650 FLOT1O75955 427 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 CYP2E1P05181 493 aaPredicted RBP7.09□□□□□ -1.27
VPS53-208ENST00000570650 PGK2P07205 417 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 POU3F3P20264 500 aaPredicted RBP7.09□□□□□ -1.27
VPS53-208ENST00000570650 CYP7A1P22680 504 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 CYP2C18P33260 490 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 SHMT1P34896 483 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 MRE11P49959 708 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 RABGGTBP53611 331 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 MTX1Q13505 466 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 KCTD2Q14681 263 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 ALDH1L2Q3SY69 923 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 CCDC158Q5M9N0 1113 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 OTOP2Q7RTS6 562 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 CYP2U1Q7Z449 544 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 RIOX2Q8IUF8 465 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 FAM126BQ8IXS8 530 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 MSL3Q8N5Y2 521 aaKnown RBP7.09□□□□□ -1.27
VPS53-208ENST00000570650 PCSK9Q8NBP7 692 aaKnown RBP7.09□□□□□ -1.27
VPS53-208ENST00000570650 PLPP7Q8NBV4 271 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 ATG4CQ96DT6 458 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 MEIS3Q99687 375 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 ARHGEF10LQ9HCE6 1279 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 PCDHA11Q9Y5I1 949 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 MTCH2Q9Y6C9 303 aa7.09□□□□□ -1.27
VPS53-208ENST00000570650 GBF1Q92538 1859 aa7.09□□□□□ -1.28
VPS53-208ENST00000570650 PRRC2BQ5JSZ5 2229 aaKnown RBP7.08□□□□□ -1.28
VPS53-208ENST00000570650 LRRC37A2A6NM11 1700 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 A0A1W2PRU2 124 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 PI4K2BG5E9Z4 385 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 SMIM22K7EJ46 135 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 MEN1O00255 615 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 MPHOSPH10O00566 681 aaKnown RBP7.08□□□□□ -1.28
VPS53-208ENST00000570650 STAU1O95793 577 aaKnown RBP7.08□□□□□ -1.28
VPS53-208ENST00000570650 ASGR1P07306 291 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 C6orf222P0C671 652 aaPredicted RBP7.08□□□□□ -1.28
VPS53-208ENST00000570650 COPB2P35606 906 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 PLCD1P51178 756 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 TMEM132BQ14DG7 1078 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.08□□□□□ -1.28
VPS53-208ENST00000570650 KIAA1755Q5JYT7 1200 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 TREML4Q6UXN2 200 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 MIGA1Q8NAN2 632 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 HIPK3Q9H422 1215 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 SPC25Q9HBM1 224 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 RAB6BQ9NRW1 208 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 SMC4Q9NTJ3 1288 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 NXF1Q9UBU9 619 aaKnown RBP7.08□□□□□ -1.28
VPS53-208ENST00000570650 ZHX1Q9UKY1 873 aaPredicted RBP7.08□□□□□ -1.28
VPS53-208ENST00000570650 SLC4A7Q9Y6M7 1214 aa7.08□□□□□ -1.28
VPS53-208ENST00000570650 PRR33A8MZF0 331 aa7.07□□□□□ -1.28
VPS53-208ENST00000570650 RFXAPO00287 272 aa7.07□□□□□ -1.28
VPS53-208ENST00000570650 WDR46O15213 610 aaKnown RBP7.07□□□□□ -1.28
VPS53-208ENST00000570650 IDH1O75874 414 aaKnown RBP7.07□□□□□ -1.28
VPS53-208ENST00000570650 SNAI1O95863 264 aaPredicted RBP7.07□□□□□ -1.28
VPS53-208ENST00000570650 CD4P01730 458 aa7.07□□□□□ -1.28
VPS53-208ENST00000570650 POLR3DP05423 398 aaPredicted RBP7.07□□□□□ -1.28
VPS53-208ENST00000570650 GNAI3P08754 354 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms