RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 EXOC6Q8TAG9 804 aa19.7■□□□□ 0.74
CLN3-231ENST00000568422 YTHDC1Q96MU7 727 aaKnown RBP19.7■□□□□ 0.74
CLN3-231ENST00000568422 UBA5Q9GZZ9 404 aa19.7■□□□□ 0.74
CLN3-231ENST00000568422 MSRAQ9UJ68 235 aa19.7■□□□□ 0.74
CLN3-231ENST00000568422 GRXCR1A8MXD5 290 aa19.69■□□□□ 0.74
CLN3-231ENST00000568422 PFKMP08237 780 aa19.69■□□□□ 0.74
CLN3-231ENST00000568422 TXNP10599 105 aaKnown RBP19.69■□□□□ 0.74
CLN3-231ENST00000568422 PBX2P40425 430 aa19.69■□□□□ 0.74
CLN3-231ENST00000568422 CCL23P55773 120 aa19.69■□□□□ 0.74
CLN3-231ENST00000568422 NFRKBQ6P4R8 1299 aa19.69■□□□□ 0.74
CLN3-231ENST00000568422 ADGRF4Q8IZF3 695 aa19.69■□□□□ 0.74
CLN3-231ENST00000568422 NSUN6Q8TEA1 469 aaKnown RBP19.69■□□□□ 0.74
CLN3-231ENST00000568422 UBAC1Q9BSL1 405 aa19.69■□□□□ 0.74
CLN3-231ENST00000568422 WNT8AQ9H1J5 351 aa19.69■□□□□ 0.74
CLN3-231ENST00000568422 TNKSO95271 1327 aa19.69■□□□□ 0.74
CLN3-231ENST00000568422 UMODL1Q5DID0 1318 aa19.69■□□□□ 0.74
CLN3-231ENST00000568422 PARP1P09874 1014 aaKnown RBP19.68■□□□□ 0.74
CLN3-231ENST00000568422 PTPN11Q06124 597 aaPredicted RBP19.68■□□□□ 0.74
CLN3-231ENST00000568422 IWS1Q96ST2 819 aa19.68■□□□□ 0.74
CLN3-231ENST00000568422 GAS2L1Q99501 681 aaPredicted RBP19.68■□□□□ 0.74
CLN3-231ENST00000568422 CXXC1Q9P0U4 656 aaPredicted RBP19.68■□□□□ 0.74
CLN3-231ENST00000568422 MRPL11Q9Y3B7 192 aaKnown RBP19.68■□□□□ 0.74
CLN3-231ENST00000568422 VCANP13611 3396 aa19.67■□□□□ 0.74
CLN3-231ENST00000568422 OTOP2Q7RTS6 562 aa19.67■□□□□ 0.74
CLN3-231ENST00000568422 CPVLQ9H3G5 476 aa19.67■□□□□ 0.74
CLN3-231ENST00000568422 TRMT13Q9NUP7 481 aaKnown RBP19.67■□□□□ 0.74
CLN3-231ENST00000568422 CHD9Q3L8U1 2897 aa19.67■□□□□ 0.74
CLN3-231ENST00000568422 DHX16O60231 1041 aaKnown RBP19.66■□□□□ 0.74
CLN3-231ENST00000568422 RFC2P35250 354 aa19.66■□□□□ 0.74
CLN3-231ENST00000568422 NBPF20Q3BBV1 942 aa19.66■□□□□ 0.74
CLN3-231ENST00000568422 FAM47CQ5HY64 1035 aa19.66■□□□□ 0.74
CLN3-231ENST00000568422 IFIT1BQ5T764 474 aaKnown RBP19.66■□□□□ 0.74
CLN3-231ENST00000568422 FBXO11Q86XK2 927 aa19.66■□□□□ 0.74
CLN3-231ENST00000568422 SYTL5Q8TDW5 730 aaPredicted RBP19.66■□□□□ 0.74
CLN3-231ENST00000568422 SLC28A3Q9HAS3 691 aa19.66■□□□□ 0.74
CLN3-231ENST00000568422 SLC4A7Q9Y6M7 1214 aa19.66■□□□□ 0.74
CLN3-231ENST00000568422 PITPNM1O00562 1244 aa19.65■□□□□ 0.74
CLN3-231ENST00000568422 STXBP2Q15833 593 aa19.65■□□□□ 0.74
CLN3-231ENST00000568422 QRICH1Q2TAL8 776 aa19.65■□□□□ 0.74
CLN3-231ENST00000568422 CCDC62Q6P9F0 684 aa19.65■□□□□ 0.74
CLN3-231ENST00000568422 SYMPKQ92797 1274 aaKnown RBP19.65■□□□□ 0.74
CLN3-231ENST00000568422 SCLYQ96I15 445 aa19.65■□□□□ 0.74
CLN3-231ENST00000568422 RMDN3Q96TC7 470 aa19.65■□□□□ 0.74
CLN3-231ENST00000568422 JMJD4Q9H9V9 463 aa19.65■□□□□ 0.74
CLN3-231ENST00000568422 TANC1Q9C0D5 1861 aa19.65■□□□□ 0.74
CLN3-231ENST00000568422 MYO9BQ13459 2157 aa19.64■□□□□ 0.74
CLN3-231ENST00000568422 CYP2C9P11712 490 aa19.64■□□□□ 0.73
CLN3-231ENST00000568422 TBC1D5Q92609 795 aa19.64■□□□□ 0.73
CLN3-231ENST00000568422 COPS5Q92905 334 aa19.64■□□□□ 0.73
CLN3-231ENST00000568422 TAAR1Q96RJ0 339 aa19.64■□□□□ 0.73
CLN3-231ENST00000568422 MAP3K20Q9NYL2 800 aaKnown RBP19.64■□□□□ 0.73
CLN3-231ENST00000568422 SCN5AQ14524 2016 aa19.64■□□□□ 0.73
CLN3-231ENST00000568422 ARIH2O95376 493 aa19.63■□□□□ 0.73
CLN3-231ENST00000568422 GH1P01241 217 aa19.63■□□□□ 0.73
CLN3-231ENST00000568422 ACTN1P12814 892 aa19.63■□□□□ 0.73
CLN3-231ENST00000568422 TRDNQ13061 729 aa19.63■□□□□ 0.73
CLN3-231ENST00000568422 BFSP2Q13515 415 aa19.63■□□□□ 0.73
CLN3-231ENST00000568422 ARHGEF16Q5VV41 709 aa19.63■□□□□ 0.73
CLN3-231ENST00000568422 SAMD3Q8N6K7 520 aa19.63■□□□□ 0.73
CLN3-231ENST00000568422 RETREG2Q8NC44 543 aa19.63■□□□□ 0.73
CLN3-231ENST00000568422 RUFY2Q8WXA3 655 aa19.63■□□□□ 0.73
CLN3-231ENST00000568422 AMNQ9BXJ7 453 aa19.63■□□□□ 0.73
CLN3-231ENST00000568422 PRDM12Q9H4Q4 367 aa19.63■□□□□ 0.73
CLN3-231ENST00000568422 VAT1LQ9HCJ6 419 aa19.63■□□□□ 0.73
CLN3-231ENST00000568422 PCDHA11Q9Y5I1 949 aa19.63■□□□□ 0.73
CLN3-231ENST00000568422 EIF3JO75822 258 aaKnown RBP19.62■□□□□ 0.73
CLN3-231ENST00000568422 GHRHRQ02643 423 aa19.62■□□□□ 0.73
CLN3-231ENST00000568422 TRAF1Q13077 416 aa19.62■□□□□ 0.73
CLN3-231ENST00000568422 SEC23AQ15436 765 aa19.62■□□□□ 0.73
CLN3-231ENST00000568422 TTC22Q5TAA0 569 aa19.62■□□□□ 0.73
CLN3-231ENST00000568422 SEPT14Q6ZU15 432 aa19.62■□□□□ 0.73
CLN3-231ENST00000568422 VWCEQ96DN2 955 aa19.62■□□□□ 0.73
CLN3-231ENST00000568422 NKX2-4Q9H2Z4 354 aa19.62■□□□□ 0.73
CLN3-231ENST00000568422 COL20A1Q9P218 1284 aa19.62■□□□□ 0.73
CLN3-231ENST00000568422 NOD1Q9Y239 953 aa19.62■□□□□ 0.73
CLN3-231ENST00000568422 MYH7BA7E2Y1 1941 aa19.62■□□□□ 0.73
CLN3-231ENST00000568422 ZBBXA8MT70 800 aa19.61■□□□□ 0.73
CLN3-231ENST00000568422 KLRF2D3W0D1 207 aa19.61■□□□□ 0.73
CLN3-231ENST00000568422 MMP3P08254 477 aa19.61■□□□□ 0.73
CLN3-231ENST00000568422 ATP2A2P16615 1042 aaKnown RBP19.61■□□□□ 0.73
CLN3-231ENST00000568422 CASTP20810 708 aaKnown RBP19.61■□□□□ 0.73
CLN3-231ENST00000568422 HSD17B4P51659 736 aa19.61■□□□□ 0.73
CLN3-231ENST00000568422 ARHGAP1Q07960 439 aa19.61■□□□□ 0.73
CLN3-231ENST00000568422 LY6KQ17RY6 165 aa19.61■□□□□ 0.73
CLN3-231ENST00000568422 SESTD1Q86VW0 696 aa19.61■□□□□ 0.73
CLN3-231ENST00000568422 CCDC155Q8N6L0 562 aa19.61■□□□□ 0.73
CLN3-231ENST00000568422 AFG1LQ8WV93 481 aa19.61■□□□□ 0.73
CLN3-231ENST00000568422 EMID1Q96A84 441 aaPredicted RBP19.61■□□□□ 0.73
CLN3-231ENST00000568422 MTMR8Q96EF0 704 aa19.61■□□□□ 0.73
CLN3-231ENST00000568422 PXMP2Q9NR77 195 aa19.61■□□□□ 0.73
CLN3-231ENST00000568422 YBX2Q9Y2T7 364 aaKnown RBP19.61■□□□□ 0.73
CLN3-231ENST00000568422 U3KPZ7 1027 aaPredicted RBP19.61■□□□□ 0.73
CLN3-231ENST00000568422 TRIP12Q14669 1992 aaPredicted RBP19.61■□□□□ 0.73
CLN3-231ENST00000568422 PALM3A6NDB9 673 aaPredicted RBP19.6■□□□□ 0.73
CLN3-231ENST00000568422 ZBTB5O15062 677 aa19.6■□□□□ 0.73
CLN3-231ENST00000568422 CFBP00751 764 aa19.6■□□□□ 0.73
CLN3-231ENST00000568422 NR3C2P08235 984 aa19.6■□□□□ 0.73
CLN3-231ENST00000568422 IQCF3P0C7M6 154 aa19.6■□□□□ 0.73
CLN3-231ENST00000568422 DGKDQ16760 1214 aa19.6■□□□□ 0.73
CLN3-231ENST00000568422 DEFB128Q7Z7B8 93 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms