RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	CEP85	Q6P2H3	762 aa		14.03	□□□□□ -0.16
CLK3-222	ENST00000568232	CNKSR3	Q6P9H4	555 aa		14.03	□□□□□ -0.16
CLK3-222	ENST00000568232	ERC1	Q8IUD2	1116 aa		14.03	□□□□□ -0.16
CLK3-222	ENST00000568232	ADHFE1	Q8IWW8	467 aa		14.03	□□□□□ -0.16
CLK3-222	ENST00000568232	GMCL1P1	Q8NEA9	526 aa		14.03	□□□□□ -0.16
CLK3-222	ENST00000568232	MRPL38	Q96DV4	380 aa	Known RBP	14.03	□□□□□ -0.16
CLK3-222	ENST00000568232	RBM47	A0AV96	593 aa	Known RBP	14.02	□□□□□ -0.17
CLK3-222	ENST00000568232	FDX1	P10109	184 aa		14.02	□□□□□ -0.17
CLK3-222	ENST00000568232	SELP	P16109	830 aa		14.02	□□□□□ -0.17
CLK3-222	ENST00000568232	PTPN11	Q06124	597 aa	Predicted RBP	14.02	□□□□□ -0.17
CLK3-222	ENST00000568232	LRRFIP1	Q32MZ4	808 aa	Known RBP	14.02	□□□□□ -0.17
CLK3-222	ENST00000568232	TCEAL5	Q5H9L2	206 aa		14.02	□□□□□ -0.17
CLK3-222	ENST00000568232	GDF6	Q6KF10	455 aa	Predicted RBP	14.02	□□□□□ -0.17
CLK3-222	ENST00000568232	LRRC8D	Q7L1W4	858 aa		14.02	□□□□□ -0.17
CLK3-222	ENST00000568232	RPAP2	Q8IXW5	612 aa	Predicted RBP	14.02	□□□□□ -0.17
CLK3-222	ENST00000568232	AFAP1L1	Q8TED9	768 aa		14.02	□□□□□ -0.17
CLK3-222	ENST00000568232	DHX38	Q92620	1227 aa	Known RBP	14.02	□□□□□ -0.17
CLK3-222	ENST00000568232	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	14.02	□□□□□ -0.17
CLK3-222	ENST00000568232	PRKAG3	Q9UGI9	489 aa		14.02	□□□□□ -0.17
CLK3-222	ENST00000568232	ZNF318	Q5VUA4	2279 aa		14.02	□□□□□ -0.17
CLK3-222	ENST00000568232	MYO15A	Q9UKN7	3530 aa		14.01	□□□□□ -0.17
CLK3-222	ENST00000568232		A6NJR5	290 aa		14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	GSG1L2	A8MUP6	293 aa		14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	TTLL1	O95922	423 aa		14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	CXCL10	P02778	98 aa		14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	MCC	P23508	829 aa		14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	ALDH5A1	P51649	535 aa	Predicted RBP	14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	BAAT	Q14032	418 aa	Predicted RBP	14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	UBE3C	Q15386	1083 aa		14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	SBK1	Q52WX2	424 aa		14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	ZKSCAN2	Q63HK3	967 aa		14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	RASGRP2	Q7LDG7	609 aa		14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	ZNF444	Q8N0Y2	327 aa	Predicted RBP	14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	BANK1	Q8NDB2	785 aa		14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	CAGE1	Q8TC20	777 aa		14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	CHURC1	Q8WUH1	139 aa		14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	STAG1	Q8WVM7	1258 aa		14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	PABPC5	Q96DU9	382 aa	Known RBP	14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	UPF3B	Q9BZI7	483 aa	Known RBP	14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	FAM86C1	Q9NVL1	165 aa		14.01	□□□□□ -0.17
CLK3-222	ENST00000568232	ABHD14A-ACY1	A0A1B0GW23	586 aa		14	□□□□□ -0.17
CLK3-222	ENST00000568232	IFIT2	P09913	472 aa	Known RBP	14	□□□□□ -0.17
CLK3-222	ENST00000568232	PTPN5	P54829	565 aa		14	□□□□□ -0.17
CLK3-222	ENST00000568232	TCF15	Q12870	199 aa		14	□□□□□ -0.17
CLK3-222	ENST00000568232	CLUL1	Q15846	466 aa		14	□□□□□ -0.17
CLK3-222	ENST00000568232	EPC2	Q52LR7	807 aa		14	□□□□□ -0.17
CLK3-222	ENST00000568232	BRDT	Q58F21	947 aa	Predicted RBP	14	□□□□□ -0.17
CLK3-222	ENST00000568232	KCTD1	Q719H9	257 aa		14	□□□□□ -0.17
CLK3-222	ENST00000568232	FAM160B2	Q86V87	743 aa		14	□□□□□ -0.17
CLK3-222	ENST00000568232	RNF135	Q8IUD6	432 aa		14	□□□□□ -0.17
CLK3-222	ENST00000568232	ITPRIP	Q8IWB1	547 aa		14	□□□□□ -0.17
CLK3-222	ENST00000568232	CLASRP	Q8N2M8	674 aa	Known RBP	14	□□□□□ -0.17
CLK3-222	ENST00000568232	CCDC155	Q8N6L0	562 aa		14	□□□□□ -0.17
CLK3-222	ENST00000568232	STRBP	Q96SI9	672 aa	Known RBP	14	□□□□□ -0.17
CLK3-222	ENST00000568232	CLDND1	Q9NY35	253 aa		14	□□□□□ -0.17
CLK3-222	ENST00000568232	CTNNA3	Q9UI47	895 aa		14	□□□□□ -0.17
CLK3-222	ENST00000568232	CCPG1	Q9ULG6	757 aa		14	□□□□□ -0.17
CLK3-222	ENST00000568232	FAM50B	Q9Y247	325 aa		14	□□□□□ -0.17
CLK3-222	ENST00000568232	SCN10A	Q9Y5Y9	1956 aa		14	□□□□□ -0.17
CLK3-222	ENST00000568232	SI	P14410	1827 aa		13.99	□□□□□ -0.17
CLK3-222	ENST00000568232	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.99	□□□□□ -0.17
CLK3-222	ENST00000568232	GFRA3	O60609	400 aa		13.99	□□□□□ -0.17
CLK3-222	ENST00000568232	RLBP1	P12271	317 aa		13.99	□□□□□ -0.17
CLK3-222	ENST00000568232	CKB	P12277	381 aa		13.99	□□□□□ -0.17
CLK3-222	ENST00000568232	LTBR	P36941	435 aa		13.99	□□□□□ -0.17
CLK3-222	ENST00000568232	SLC1A4	P43007	532 aa		13.99	□□□□□ -0.17
CLK3-222	ENST00000568232	IKBKE	Q14164	716 aa		13.99	□□□□□ -0.17
CLK3-222	ENST00000568232	PPP2R5B	Q15173	497 aa		13.99	□□□□□ -0.17
CLK3-222	ENST00000568232	PTPRO	Q16827	1216 aa		13.99	□□□□□ -0.17
CLK3-222	ENST00000568232	HERC4	Q5GLZ8	1057 aa	Predicted RBP	13.99	□□□□□ -0.17
CLK3-222	ENST00000568232	PRR12	Q9ULL5	1215 aa		13.99	□□□□□ -0.17
CLK3-222	ENST00000568232	INSL6	Q9Y581	213 aa		13.99	□□□□□ -0.17
CLK3-222	ENST00000568232	LCT	P09848	1927 aa		13.99	□□□□□ -0.17
CLK3-222	ENST00000568232	MYH4	Q9Y623	1939 aa		13.98	□□□□□ -0.17
CLK3-222	ENST00000568232	NFIB	O00712	420 aa		13.98	□□□□□ -0.17
CLK3-222	ENST00000568232	KPNA6	O60684	536 aa		13.98	□□□□□ -0.17
CLK3-222	ENST00000568232	DLX2	Q07687	328 aa	Predicted RBP	13.98	□□□□□ -0.17
CLK3-222	ENST00000568232	GPM6B	Q13491	265 aa		13.98	□□□□□ -0.17
CLK3-222	ENST00000568232	COL19A1	Q14993	1142 aa		13.98	□□□□□ -0.17
CLK3-222	ENST00000568232	TIGD5	Q53EQ6	642 aa		13.98	□□□□□ -0.17
CLK3-222	ENST00000568232	EDA	Q92838	391 aa		13.98	□□□□□ -0.17
CLK3-222	ENST00000568232	PBXIP1	Q96AQ6	731 aa		13.98	□□□□□ -0.17
CLK3-222	ENST00000568232	HAUS7	Q99871	368 aa		13.98	□□□□□ -0.17
CLK3-222	ENST00000568232	ADD3	Q9UEY8	706 aa	Known RBP	13.98	□□□□□ -0.17
CLK3-222	ENST00000568232	SYNPO2	Q9UMS6	1093 aa		13.98	□□□□□ -0.17
CLK3-222	ENST00000568232	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	13.98	□□□□□ -0.17
CLK3-222	ENST00000568232	RAD50	Q92878	1312 aa		13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	DMD	P11532	3685 aa		13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	PTPDC1	A2A3K4	754 aa		13.97	□□□□□ -0.17
CLK3-222	ENST00000568232		H3BNC9	293 aa		13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	ARIH2	O95376	493 aa		13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	TXN	P10599	105 aa	Known RBP	13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	ATP5J	P18859	108 aa		13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	HTRA4	P83105	476 aa	Predicted RBP	13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	MBTPS1	Q14703	1052 aa		13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	SMAD2	Q15796	467 aa	Known RBP	13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	ASTL	Q6HA08	431 aa	Predicted RBP	13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	SLC30A10	Q6XR72	485 aa		13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	RPAIN	Q86UA6	219 aa		13.97	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 30 ms