RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 NKRFO15226 690 aaKnown RBP eCLIP19.76■□□□□ 0.75
CLN3-211ENST00000564091 KDM4AO75164 1064 aa19.76■□□□□ 0.75
CLN3-211ENST00000564091 ARIH2O95376 493 aa19.76■□□□□ 0.75
CLN3-211ENST00000564091 TXNP10599 105 aaKnown RBP19.76■□□□□ 0.75
CLN3-211ENST00000564091 MFAP1P55081 439 aaKnown RBP19.76■□□□□ 0.75
CLN3-211ENST00000564091 CHD1LQ86WJ1 897 aa19.76■□□□□ 0.75
CLN3-211ENST00000564091 PNMA1Q8ND90 353 aa19.76■□□□□ 0.75
CLN3-211ENST00000564091 CHD7Q9P2D1 2997 aa19.76■□□□□ 0.75
CLN3-211ENST00000564091 IGHDP01880 384 aa19.75■□□□□ 0.75
CLN3-211ENST00000564091 CHMP4BP1P59074 171 aa19.75■□□□□ 0.75
CLN3-211ENST00000564091 CDC37Q16543 378 aaPredicted RBP19.75■□□□□ 0.75
CLN3-211ENST00000564091 RGS22Q8NE09 1264 aa19.75■□□□□ 0.75
CLN3-211ENST00000564091 TAAR1Q96RJ0 339 aa19.75■□□□□ 0.75
CLN3-211ENST00000564091 RWDD1Q9H446 243 aaPredicted RBP19.75■□□□□ 0.75
CLN3-211ENST00000564091 RAD50Q92878 1312 aa19.75■□□□□ 0.75
CLN3-211ENST00000564091 B4E1Z4 1266 aa19.74■□□□□ 0.75
CLN3-211ENST00000564091 ATP2A2P16615 1042 aaKnown RBP19.74■□□□□ 0.75
CLN3-211ENST00000564091 PPP2R2DQ66LE6 453 aa19.74■□□□□ 0.75
CLN3-211ENST00000564091 IQCA1Q86XH1 822 aa19.74■□□□□ 0.75
CLN3-211ENST00000564091 ADGRF4Q8IZF3 695 aa19.74■□□□□ 0.75
CLN3-211ENST00000564091 SYTL5Q8TDW5 730 aaPredicted RBP19.74■□□□□ 0.75
CLN3-211ENST00000564091 KAT14Q9H8E8 782 aa19.74■□□□□ 0.75
CLN3-211ENST00000564091 DIAPH3Q9NSV4 1193 aa19.74■□□□□ 0.75
CLN3-211ENST00000564091 B4DLN1 442 aa19.73■□□□□ 0.75
CLN3-211ENST00000564091 KPNA6O60684 536 aa19.73■□□□□ 0.75
CLN3-211ENST00000564091 MRPL12P52815 198 aaKnown RBP19.73■□□□□ 0.75
CLN3-211ENST00000564091 NUCB1Q02818 461 aa19.73■□□□□ 0.75
CLN3-211ENST00000564091 NFRKBQ6P4R8 1299 aa19.73■□□□□ 0.75
CLN3-211ENST00000564091 CCDC62Q6P9F0 684 aa19.73■□□□□ 0.75
CLN3-211ENST00000564091 SEPT14Q6ZU15 432 aa19.73■□□□□ 0.75
CLN3-211ENST00000564091 ANKS1AQ92625 1134 aa19.73■□□□□ 0.75
CLN3-211ENST00000564091 ZSCAN10Q96SZ4 725 aaPredicted RBP19.73■□□□□ 0.75
CLN3-211ENST00000564091 OSBPL3Q9H4L5 887 aa19.73■□□□□ 0.75
CLN3-211ENST00000564091 VAT1LQ9HCJ6 419 aa19.73■□□□□ 0.75
CLN3-211ENST00000564091 COL20A1Q9P218 1284 aa19.73■□□□□ 0.75
CLN3-211ENST00000564091 PCDHA11Q9Y5I1 949 aa19.73■□□□□ 0.75
CLN3-211ENST00000564091 LRRC37A2A6NM11 1700 aa19.72■□□□□ 0.75
CLN3-211ENST00000564091 PFKMP08237 780 aa19.72■□□□□ 0.75
CLN3-211ENST00000564091 LY6KQ17RY6 165 aa19.72■□□□□ 0.75
CLN3-211ENST00000564091 CCDC178Q5BJE1 867 aa19.72■□□□□ 0.75
CLN3-211ENST00000564091 ENAHQ8N8S7 591 aaPredicted RBP19.72■□□□□ 0.75
CLN3-211ENST00000564091 RETREG2Q8NC44 543 aa19.72■□□□□ 0.75
CLN3-211ENST00000564091 AFG1LQ8WV93 481 aa19.72■□□□□ 0.75
CLN3-211ENST00000564091 ZSWIM5Q9P217 1185 aa19.72■□□□□ 0.75
CLN3-211ENST00000564091 DHX16O60231 1041 aaKnown RBP19.71■□□□□ 0.75
CLN3-211ENST00000564091 IQCF3P0C7M6 154 aa19.71■□□□□ 0.75
CLN3-211ENST00000564091 QRICH1Q2TAL8 776 aa19.71■□□□□ 0.75
CLN3-211ENST00000564091 CHST3Q7LGC8 479 aa19.71■□□□□ 0.75
CLN3-211ENST00000564091 NSUN6Q8TEA1 469 aaKnown RBP19.71■□□□□ 0.75
CLN3-211ENST00000564091 ATXN2LQ8WWM7 1075 aaKnown RBP19.71■□□□□ 0.75
CLN3-211ENST00000564091 FTOQ9C0B1 505 aaKnown RBP eCLIP19.71■□□□□ 0.75
CLN3-211ENST00000564091 THEGQ9P2T0 379 aa19.71■□□□□ 0.75
CLN3-211ENST00000564091 NOD1Q9Y239 953 aa19.71■□□□□ 0.75
CLN3-211ENST00000564091 ABCB11O95342 1321 aa19.71■□□□□ 0.75
CLN3-211ENST00000564091 XIRP2A4UGR9 3374 aa19.7■□□□□ 0.74
CLN3-211ENST00000564091 AAMPQ13685 434 aa19.7■□□□□ 0.74
CLN3-211ENST00000564091 ASPRV1Q53RT3 343 aa19.7■□□□□ 0.74
CLN3-211ENST00000564091 MICALL1Q8N3F8 863 aa19.7■□□□□ 0.74
CLN3-211ENST00000564091 ASB2Q96Q27 587 aa19.7■□□□□ 0.74
CLN3-211ENST00000564091 RMDN3Q96TC7 470 aa19.7■□□□□ 0.74
CLN3-211ENST00000564091 JMJD4Q9H9V9 463 aa19.7■□□□□ 0.74
CLN3-211ENST00000564091 RFXAPO00287 272 aa19.69■□□□□ 0.74
CLN3-211ENST00000564091 PITPNM1O00562 1244 aa19.69■□□□□ 0.74
CLN3-211ENST00000564091 GH1P01241 217 aa19.69■□□□□ 0.74
CLN3-211ENST00000564091 CA3P07451 260 aa19.69■□□□□ 0.74
CLN3-211ENST00000564091 MMP3P08254 477 aa19.69■□□□□ 0.74
CLN3-211ENST00000564091 PARP1P09874 1014 aaKnown RBP19.69■□□□□ 0.74
CLN3-211ENST00000564091 RFC2P35250 354 aa19.69■□□□□ 0.74
CLN3-211ENST00000564091 NT5C2P49902 561 aa19.69■□□□□ 0.74
CLN3-211ENST00000564091 PTPN11Q06124 597 aaPredicted RBP19.69■□□□□ 0.74
CLN3-211ENST00000564091 ARHGAP1Q07960 439 aa19.69■□□□□ 0.74
CLN3-211ENST00000564091 BFSP2Q13515 415 aa19.69■□□□□ 0.74
CLN3-211ENST00000564091 PTGISQ16647 500 aa19.69■□□□□ 0.74
CLN3-211ENST00000564091 IMMTQ16891 758 aaKnown RBP19.69■□□□□ 0.74
CLN3-211ENST00000564091 TMEM67Q5HYA8 995 aa19.69■□□□□ 0.74
CLN3-211ENST00000564091 FBXO11Q86XK2 927 aa19.69■□□□□ 0.74
CLN3-211ENST00000564091 MCF2L2Q86YR7 1114 aa19.69■□□□□ 0.74
CLN3-211ENST00000564091 EXOC6Q8TAG9 804 aa19.69■□□□□ 0.74
CLN3-211ENST00000564091 YTHDC1Q96MU7 727 aaKnown RBP19.69■□□□□ 0.74
CLN3-211ENST00000564091 DSCC1Q9BVC3 393 aa19.69■□□□□ 0.74
CLN3-211ENST00000564091 CERS4Q9HA82 394 aa19.69■□□□□ 0.74
CLN3-211ENST00000564091 MRPL11Q9Y3B7 192 aaKnown RBP19.69■□□□□ 0.74
CLN3-211ENST00000564091 LCTP09848 1927 aa19.68■□□□□ 0.74
CLN3-211ENST00000564091 TNFRSF10AO00220 468 aa19.68■□□□□ 0.74
CLN3-211ENST00000564091 ACTN1P12814 892 aa19.68■□□□□ 0.74
CLN3-211ENST00000564091 EIF2AK2P19525 551 aaKnown RBP19.68■□□□□ 0.74
CLN3-211ENST00000564091 STXBP2Q15833 593 aa19.68■□□□□ 0.74
CLN3-211ENST00000564091 ARHGEF16Q5VV41 709 aa19.68■□□□□ 0.74
CLN3-211ENST00000564091 GDF6Q6KF10 455 aaPredicted RBP19.68■□□□□ 0.74
CLN3-211ENST00000564091 STAG2Q8N3U4 1231 aa19.68■□□□□ 0.74
CLN3-211ENST00000564091 KAT2BQ92831 832 aa19.68■□□□□ 0.74
CLN3-211ENST00000564091 CTAGE1Q96RT6 745 aa19.68■□□□□ 0.74
CLN3-211ENST00000564091 IWS1Q96ST2 819 aa19.68■□□□□ 0.74
CLN3-211ENST00000564091 MYO9BQ13459 2157 aa19.68■□□□□ 0.74
CLN3-211ENST00000564091 RBAK-RBAKDNI3L0D1 243 aa19.67■□□□□ 0.74
CLN3-211ENST00000564091 HIP1O00291 1037 aa19.67■□□□□ 0.74
CLN3-211ENST00000564091 MRPS5P82675 430 aaKnown RBP19.67■□□□□ 0.74
CLN3-211ENST00000564091 UBAC1Q9BSL1 405 aa19.67■□□□□ 0.74
CLN3-211ENST00000564091 KRT23Q9C075 422 aa19.67■□□□□ 0.74
CLN3-211ENST00000564091 MAF1Q9H063 256 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms