RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 CPLX1O14810 134 aa19.25■□□□□ 0.67
CLK3-207ENST00000562389 SCG2P13521 617 aa19.25■□□□□ 0.67
CLK3-207ENST00000562389 AKAP17AQ02040 695 aaKnown RBP19.25■□□□□ 0.67
CLK3-207ENST00000562389 PDE4DQ08499 809 aa19.25■□□□□ 0.67
CLK3-207ENST00000562389 PKN1Q16512 942 aa19.25■□□□□ 0.67
CLK3-207ENST00000562389 CCDC144BQ3MJ40 725 aa19.25■□□□□ 0.67
CLK3-207ENST00000562389 ARHGEF16Q5VV41 709 aa19.25■□□□□ 0.67
CLK3-207ENST00000562389 CPLX2Q6PUV4 134 aaKnown RBP19.25■□□□□ 0.67
CLK3-207ENST00000562389 TEX2Q8IWB9 1127 aa19.25■□□□□ 0.67
CLK3-207ENST00000562389 FBXO16Q8IX29 292 aaPredicted RBP19.25■□□□□ 0.67
CLK3-207ENST00000562389 TBC1D32Q96NH3 1257 aa19.25■□□□□ 0.67
CLK3-207ENST00000562389 PSTPIP2Q9H939 334 aa19.25■□□□□ 0.67
CLK3-207ENST00000562389 FRMPD4Q14CM0 1322 aa19.25■□□□□ 0.67
CLK3-207ENST00000562389 MEIS2O14770 477 aa19.24■□□□□ 0.67
CLK3-207ENST00000562389 RARBP10826 455 aa19.24■□□□□ 0.67
CLK3-207ENST00000562389 NAPAP54920 295 aa19.24■□□□□ 0.67
CLK3-207ENST00000562389 RABEP1Q15276 862 aa19.24■□□□□ 0.67
CLK3-207ENST00000562389 TYW1BQ6NUM6 668 aa19.24■□□□□ 0.67
CLK3-207ENST00000562389 TAPT1Q6NXT6 567 aa19.24■□□□□ 0.67
CLK3-207ENST00000562389 UBE2Q1Q7Z7E8 422 aa19.24■□□□□ 0.67
CLK3-207ENST00000562389 SMARCC2Q8TAQ2 1214 aa19.24■□□□□ 0.67
CLK3-207ENST00000562389 SLC26A6Q9BXS9 759 aa19.24■□□□□ 0.67
CLK3-207ENST00000562389 FARP2O94887 1054 aaPredicted RBP19.23■□□□□ 0.67
CLK3-207ENST00000562389 EIF2AK2P19525 551 aaKnown RBP19.23■□□□□ 0.67
CLK3-207ENST00000562389 SSRP1Q08945 709 aaKnown RBP19.23■□□□□ 0.67
CLK3-207ENST00000562389 ME3Q16798 604 aa19.23■□□□□ 0.67
CLK3-207ENST00000562389 ANO1Q5XXA6 986 aa19.23■□□□□ 0.67
CLK3-207ENST00000562389 USP17L6PQ6QN14 398 aa19.23■□□□□ 0.67
CLK3-207ENST00000562389 NOL8Q76FK4 1167 aaKnown RBP19.23■□□□□ 0.67
CLK3-207ENST00000562389 EEPD1Q7L9B9 569 aa19.23■□□□□ 0.67
CLK3-207ENST00000562389 FCHSD1Q86WN1 690 aa19.23■□□□□ 0.67
CLK3-207ENST00000562389 TRIM22Q8IYM9 498 aa19.23■□□□□ 0.67
CLK3-207ENST00000562389 IL27Q8NEV9 243 aa19.23■□□□□ 0.67
CLK3-207ENST00000562389 PDCD2LQ9BRP1 358 aa19.23■□□□□ 0.67
CLK3-207ENST00000562389 RBM47A0AV96 593 aaKnown RBP19.22■□□□□ 0.67
CLK3-207ENST00000562389 ESYT2A0FGR8 921 aa19.22■□□□□ 0.67
CLK3-207ENST00000562389 ADCY6O43306 1168 aa19.22■□□□□ 0.67
CLK3-207ENST00000562389 DUSP11O75319 330 aaKnown RBP19.22■□□□□ 0.67
CLK3-207ENST00000562389 CDKL5O76039 1030 aa19.22■□□□□ 0.67
CLK3-207ENST00000562389 LARGE1O95461 756 aa19.22■□□□□ 0.67
CLK3-207ENST00000562389 NR3C2P08235 984 aa19.22■□□□□ 0.67
CLK3-207ENST00000562389 MNX1P50219 401 aaPredicted RBP19.22■□□□□ 0.67
CLK3-207ENST00000562389 PGM5Q15124 567 aa19.22■□□□□ 0.67
CLK3-207ENST00000562389 STXBP2Q15833 593 aa19.22■□□□□ 0.67
CLK3-207ENST00000562389 IQSEC1Q6DN90 963 aa19.22■□□□□ 0.67
CLK3-207ENST00000562389 CCDC12Q8WUD4 166 aaPredicted RBP19.22■□□□□ 0.67
CLK3-207ENST00000562389 GTF3C6Q969F1 213 aa19.22■□□□□ 0.67
CLK3-207ENST00000562389 LENG1Q96BZ8 264 aaPredicted RBP19.22■□□□□ 0.67
CLK3-207ENST00000562389 GLT8D2Q9H1C3 349 aa19.22■□□□□ 0.67
CLK3-207ENST00000562389 RIC8AQ9NPQ8 531 aa19.22■□□□□ 0.67
CLK3-207ENST00000562389 XPNPEP3Q9NQH7 507 aa19.22■□□□□ 0.67
CLK3-207ENST00000562389 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.21■□□□□ 0.67
CLK3-207ENST00000562389 PPFIA3O75145 1194 aa19.21■□□□□ 0.67
CLK3-207ENST00000562389 DEXIO95424 95 aa19.21■□□□□ 0.67
CLK3-207ENST00000562389 ADCYAP1R1P41586 468 aa19.21■□□□□ 0.67
CLK3-207ENST00000562389 ADCY7P51828 1080 aa19.21■□□□□ 0.67
CLK3-207ENST00000562389 TNFAIP2Q03169 654 aa19.21■□□□□ 0.67
CLK3-207ENST00000562389 ARRDC4Q8NCT1 418 aa19.21■□□□□ 0.67
CLK3-207ENST00000562389 PDGFCQ9NRA1 345 aa19.21■□□□□ 0.67
CLK3-207ENST00000562389 LIMCH1Q9UPQ0 1083 aa19.21■□□□□ 0.67
CLK3-207ENST00000562389 STK36Q9NRP7 1315 aa19.21■□□□□ 0.67
CLK3-207ENST00000562389 SMCO2A6NFE2 343 aa19.2■□□□□ 0.66
CLK3-207ENST00000562389 DNM1LO00429 736 aa19.2■□□□□ 0.66
CLK3-207ENST00000562389 ADAMTS4O75173 837 aa19.2■□□□□ 0.66
CLK3-207ENST00000562389 SMPD1P17405 629 aa19.2■□□□□ 0.66
CLK3-207ENST00000562389 UBE2SQ16763 222 aa19.2■□□□□ 0.66
CLK3-207ENST00000562389 CCDC148Q8NFR7 591 aa19.2■□□□□ 0.66
CLK3-207ENST00000562389 DIS3LQ8TF46 1054 aaKnown RBP19.2■□□□□ 0.66
CLK3-207ENST00000562389 ZMYND12Q9H0C1 365 aa19.2■□□□□ 0.66
CLK3-207ENST00000562389 UPF3AQ9H1J1 476 aaKnown RBP19.2■□□□□ 0.66
CLK3-207ENST00000562389 SH3GLB2Q9NR46 395 aa19.2■□□□□ 0.66
CLK3-207ENST00000562389 GNEQ9Y223 722 aaKnown RBP19.2■□□□□ 0.66
CLK3-207ENST00000562389 SYNRGQ9UMZ2 1314 aa19.2■□□□□ 0.66
CLK3-207ENST00000562389 EIF3JO75822 258 aaKnown RBP19.19■□□□□ 0.66
CLK3-207ENST00000562389 CCND2P30279 289 aa19.19■□□□□ 0.66
CLK3-207ENST00000562389 MLLT1Q03111 559 aaPredicted RBP19.19■□□□□ 0.66
CLK3-207ENST00000562389 LRRC41Q15345 812 aa19.19■□□□□ 0.66
CLK3-207ENST00000562389 DUSP28Q4G0W2 176 aa19.19■□□□□ 0.66
CLK3-207ENST00000562389 VSIG10LQ86VR7 867 aa19.19■□□□□ 0.66
CLK3-207ENST00000562389 NECAB1Q8N987 351 aa19.19■□□□□ 0.66
CLK3-207ENST00000562389 IL31RAQ8NI17 732 aa19.19■□□□□ 0.66
CLK3-207ENST00000562389 SCFD2Q8WU76 684 aa19.19■□□□□ 0.66
CLK3-207ENST00000562389 PAWRQ96IZ0 340 aaKnown RBP19.19■□□□□ 0.66
CLK3-207ENST00000562389 Q9Y3F1 56 aa19.19■□□□□ 0.66
CLK3-207ENST00000562389 SPDYE3A6NKU9 549 aa19.18■□□□□ 0.66
CLK3-207ENST00000562389 NKRFO15226 690 aaKnown RBP eCLIP19.18■□□□□ 0.66
CLK3-207ENST00000562389 ST18O60284 1047 aa19.18■□□□□ 0.66
CLK3-207ENST00000562389 CTDNEP1O95476 244 aa19.18■□□□□ 0.66
CLK3-207ENST00000562389 PGK1P00558 417 aa19.18■□□□□ 0.66
CLK3-207ENST00000562389 COL6A1P12109 1028 aa19.18■□□□□ 0.66
CLK3-207ENST00000562389 MYCLP12524 364 aaPredicted RBP19.18■□□□□ 0.66
CLK3-207ENST00000562389 CST5P28325 142 aaPredicted RBP19.18■□□□□ 0.66
CLK3-207ENST00000562389 CLK2P49760 499 aaKnown RBP19.18■□□□□ 0.66
CLK3-207ENST00000562389 GJA9P57773 515 aa19.18■□□□□ 0.66
CLK3-207ENST00000562389 NKX3-2P78367 333 aa19.18■□□□□ 0.66
CLK3-207ENST00000562389 GJC2Q5T442 439 aaPredicted RBP19.18■□□□□ 0.66
CLK3-207ENST00000562389 NECAB2Q7Z6G3 386 aa19.18■□□□□ 0.66
CLK3-207ENST00000562389 RNF180Q86T96 592 aa19.18■□□□□ 0.66
CLK3-207ENST00000562389 FAM177A1Q8N128 213 aaPredicted RBP19.18■□□□□ 0.66
CLK3-207ENST00000562389 WDR11Q9BZH6 1224 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms