RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 CCL15Q16663 113 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 MUM1L1Q5H9M0 696 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 GPAT2Q6NUI2 795 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 NSMFQ6X4W1 530 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 ANKRD23Q86SG2 305 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 SLFN12Q8IYM2 578 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 AK8Q96MA6 479 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 CSRNP2Q9H175 543 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 TNMDQ9H2S6 317 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 ACAD9Q9H845 621 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 TMEM63CQ9P1W3 806 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 HOOK1Q9UJC3 728 aaKnown RBP11.67□□□□□ -0.54
USP3-219ENST00000561326 KCNH3Q9ULD8 1083 aa11.67□□□□□ -0.54
USP3-219ENST00000561326 FAM237AA0A1B0GTK4 181 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 NFIBO00712 420 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 TBX3O15119 743 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 PFKFB1P16118 471 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 CIITAP33076 1130 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 NDUFA8P51970 172 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 INHBEP58166 350 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 PDIA5Q14554 519 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 ZSCAN23Q3MJ62 389 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 RGMBQ6NW40 437 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 KANK3Q6NY19 840 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 SHC4Q6S5L8 630 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 RIOX2Q8IUF8 465 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 FMR1NBQ8N0W7 255 aaPredicted RBP11.66□□□□□ -0.54
USP3-219ENST00000561326 ENGASEQ8NFI3 743 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 CCDC102AQ96A19 550 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 MS4A4AQ96JQ5 239 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 TIGD1Q96MW7 591 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 SPATC1LQ9H0A9 340 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 USP25Q9UHP3 1055 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 A0A0G2JMZ2 1700 aa11.66□□□□□ -0.54
USP3-219ENST00000561326 PFASO15067 1338 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 PASKQ96RG2 1323 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 MANSC4A6NHS7 340 aaPredicted RBP11.65□□□□□ -0.54
USP3-219ENST00000561326 B4DLN1 442 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 PDHXO00330 501 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 TOMM70O94826 608 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 TDP2O95551 362 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 TAL1P17542 331 aaPredicted RBP11.65□□□□□ -0.54
USP3-219ENST00000561326 UBA7P41226 1012 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 TXKP42681 527 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 GCLCP48506 637 aaPredicted RBP11.65□□□□□ -0.54
USP3-219ENST00000561326 RPS6P62753 249 aaKnown RBP11.65□□□□□ -0.54
USP3-219ENST00000561326 CCNA1P78396 465 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 SNW1Q13573 536 aaKnown RBP11.65□□□□□ -0.54
USP3-219ENST00000561326 BAATQ14032 418 aaPredicted RBP11.65□□□□□ -0.54
USP3-219ENST00000561326 GSE1Q14687 1217 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 Q4G0T1 1027 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 XRRA1Q6P2D8 792 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 SAPCD2Q86UD0 394 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 SMCR8Q8TEV9 937 aaPredicted RBP11.65□□□□□ -0.54
USP3-219ENST00000561326 CRYGNQ8WXF5 182 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 FAM20AQ96MK3 541 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 MTMR9Q96QG7 549 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 PAGR1Q9BTK6 254 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 TMEM60Q9H2L4 133 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 GOLPH3LQ9H4A5 285 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 CLSTN2Q9H4D0 955 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 CCDC39Q9UFE4 941 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 PCDHA12Q9UN75 941 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 HPSEQ9Y251 543 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 RIPK3Q9Y572 518 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 STK24Q9Y6E0 443 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 MRVI1Q9Y6F6 885 aa11.65□□□□□ -0.54
USP3-219ENST00000561326 BTBD19C9JJ37 291 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 KIF3CO14782 793 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 TECP42680 631 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 FXR2P51116 673 aaKnown RBP eCLIP11.64□□□□□ -0.55
USP3-219ENST00000561326 ZNF445P59923 1031 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 MKRN3Q13064 507 aaKnown RBP11.64□□□□□ -0.55
USP3-219ENST00000561326 PRR16Q569H4 304 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 SPECC1Q5M775 1068 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 ARHGEF16Q5VV41 709 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 NCAPG2Q86XI2 1143 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 POTEDQ86YR6 584 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 ANKRD35Q8N283 1001 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 IQUBQ8NA54 791 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 SYTL5Q8TDW5 730 aaPredicted RBP11.64□□□□□ -0.55
USP3-219ENST00000561326 NSUN6Q8TEA1 469 aaKnown RBP11.64□□□□□ -0.55
USP3-219ENST00000561326 BRI3BPQ8WY22 251 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 MBOAT7Q96N66 472 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 RMDN3Q96TC7 470 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 MPHOSPH6Q99547 160 aaKnown RBP11.64□□□□□ -0.55
USP3-219ENST00000561326 CCSER1Q9C0I3 900 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 MROH8Q9H579 483 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 TTC12Q9H892 705 aaPredicted RBP11.64□□□□□ -0.55
USP3-219ENST00000561326 ZCCHC17Q9NP64 241 aaKnown RBP11.64□□□□□ -0.55
USP3-219ENST00000561326 BTBD7Q9P203 1132 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 RBPJLQ9UBG7 517 aa11.64□□□□□ -0.55
USP3-219ENST00000561326 SYCE3A1L190 88 aa11.63□□□□□ -0.55
USP3-219ENST00000561326 TESPA1A2RU30 521 aaPredicted RBP11.63□□□□□ -0.55
USP3-219ENST00000561326 TMEM88BA6NKF7 163 aa11.63□□□□□ -0.55
USP3-219ENST00000561326 POLR2DO15514 142 aaKnown RBP11.63□□□□□ -0.55
USP3-219ENST00000561326 SLC37A4O43826 429 aa11.63□□□□□ -0.55
USP3-219ENST00000561326 EDIL3O43854 480 aa11.63□□□□□ -0.55
USP3-219ENST00000561326 SETQ01105 290 aaPredicted RBP11.63□□□□□ -0.55
USP3-219ENST00000561326 GRIN1Q05586 938 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms