RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 SLC37A4O43826 429 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 PEX10O60683 326 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 NR1I2O75469 434 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 CNMDO75829 334 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 TOMM70O94826 608 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 OR52Z1P0C646 297 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 CYP3A7P24462 503 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 PRPHP41219 470 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 RPS6P62753 249 aaKnown RBP12.73□□□□□ -0.37
USP3-218ENST00000560202 FAM160A1Q05DH4 1040 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 IL17AQ16552 155 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 RGMBQ6NW40 437 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 MOXD1Q6UVY6 613 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 NSMFQ6X4W1 530 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 RNF207Q6ZRF8 634 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 RIOX2Q8IUF8 465 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 ENGASEQ8NFI3 743 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 SYTL5Q8TDW5 730 aaPredicted RBP12.73□□□□□ -0.37
USP3-218ENST00000560202 PAGR1Q9BTK6 254 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 SPATC1LQ9H0A9 340 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 ACAD9Q9H845 621 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 COL20A1Q9P218 1284 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 RBPJLQ9UBG7 517 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 DDX25Q9UHL0 483 aaKnown RBP12.73□□□□□ -0.37
USP3-218ENST00000560202 TLL2Q9Y6L7 1015 aa12.73□□□□□ -0.37
USP3-218ENST00000560202 TRPM7Q96QT4 1865 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 FAM237AA0A1B0GTK4 181 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 CYP3A4P08684 503 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 CYP2C8P10632 490 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 PFKFB1P16118 471 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 CIITAP33076 1130 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 NDUFA8P51970 172 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 SNW1Q13573 536 aaKnown RBP12.72□□□□□ -0.37
USP3-218ENST00000560202 CALCRLQ16602 461 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 SPECC1Q5M775 1068 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 SLC30A10Q6XR72 485 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 DTHD1Q6ZMT9 781 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 CHST13Q8NET6 341 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 MBOAT7Q96N66 472 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 MTMR9Q96QG7 549 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 MAF1Q9H063 256 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 DDX19AQ9NUU7 478 aaKnown RBP12.72□□□□□ -0.37
USP3-218ENST00000560202 HPSEQ9Y251 543 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 RABGAP1Q9Y3P9 1069 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 SMCHD1A6NHR9 2005 aa12.72□□□□□ -0.37
USP3-218ENST00000560202 TESPA1A2RU30 521 aaPredicted RBP12.71□□□□□ -0.37
USP3-218ENST00000560202 LONP1P36776 959 aaKnown RBP12.71□□□□□ -0.37
USP3-218ENST00000560202 BAATQ14032 418 aaPredicted RBP12.71□□□□□ -0.37
USP3-218ENST00000560202 CCDC183Q5T5S1 534 aa12.71□□□□□ -0.37
USP3-218ENST00000560202 FMR1NBQ8N0W7 255 aaPredicted RBP12.71□□□□□ -0.37
USP3-218ENST00000560202 GTF3C2Q8WUA4 911 aaPredicted RBP12.71□□□□□ -0.37
USP3-218ENST00000560202 PTPN18Q99952 460 aa12.71□□□□□ -0.37
USP3-218ENST00000560202 TXNRD2Q9NNW7 524 aa12.71□□□□□ -0.37
USP3-218ENST00000560202 FAM13BQ9NYF5 915 aa12.71□□□□□ -0.37
USP3-218ENST00000560202 FBXO40Q9UH90 709 aa12.71□□□□□ -0.37
USP3-218ENST00000560202 A0A0G2JMZ2 1700 aa12.71□□□□□ -0.37
USP3-218ENST00000560202 RPTORQ8N122 1335 aa12.71□□□□□ -0.38
USP3-218ENST00000560202 COL11A1P12107 1806 aaPredicted RBP12.7□□□□□ -0.38
USP3-218ENST00000560202 TMEM88BA6NKF7 163 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 FAM86B1E9PN63 330 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 FAM86B2P0C5J1 330 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 ZNF76P36508 570 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 UBXN2AP68543 259 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 ZSCAN23Q3MJ62 389 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 Q4G0T1 1027 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 SMCR8Q8TEV9 937 aaPredicted RBP12.7□□□□□ -0.38
USP3-218ENST00000560202 TAAR1Q96RJ0 339 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 MOV10L1Q9BXT6 1211 aaKnown RBP12.7□□□□□ -0.38
USP3-218ENST00000560202 A1CFQ9NQ94 594 aaKnown RBP12.7□□□□□ -0.38
USP3-218ENST00000560202 CYP39A1Q9NYL5 469 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 FSD2A1L4K1 749 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 GOLGA6L3A6NEY3 463 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 MANSC4A6NHS7 340 aaPredicted RBP12.7□□□□□ -0.38
USP3-218ENST00000560202 KINO60870 393 aaKnown RBP12.7□□□□□ -0.38
USP3-218ENST00000560202 SLC25A27O95847 323 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 SLC10A3P09131 477 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 COPB2P35606 906 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 TXKP42681 527 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 SYKP43405 635 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 Q3C1V9 767 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 PRR16Q569H4 304 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 USP49Q70CQ1 688 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 NCAPG2Q86XI2 1143 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 SYMPKQ92797 1274 aaKnown RBP12.7□□□□□ -0.38
USP3-218ENST00000560202 EPSTI1Q96J88 318 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 RMDN3Q96TC7 470 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 NUP62CLQ9H1M0 184 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 CLSTN2Q9H4D0 955 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 KCNH3Q9ULD8 1083 aa12.7□□□□□ -0.38
USP3-218ENST00000560202 ABT1Q9ULW3 272 aaKnown RBP12.7□□□□□ -0.38
USP3-218ENST00000560202 FRMPD4Q14CM0 1322 aa12.69□□□□□ -0.38
USP3-218ENST00000560202 MARCH6O60337 910 aa12.69□□□□□ -0.38
USP3-218ENST00000560202 ZNF202O95125 648 aa12.69□□□□□ -0.38
USP3-218ENST00000560202 ERCC3P19447 782 aa12.69□□□□□ -0.38
USP3-218ENST00000560202 ERVK-9P63128 1117 aa12.69□□□□□ -0.38
USP3-218ENST00000560202 ERVK-24P63145 666 aa12.69□□□□□ -0.38
USP3-218ENST00000560202 FSTL1Q12841 308 aa12.69□□□□□ -0.38
USP3-218ENST00000560202 ANKRD35Q8N283 1001 aa12.69□□□□□ -0.38
USP3-218ENST00000560202 CYP2W1Q8TAV3 490 aa12.69□□□□□ -0.38
USP3-218ENST00000560202 HAS1Q92839 578 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms