RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 IFIT1BQ5T764 474 aaKnown RBP12.75□□□□□ -0.37
SYNE2-227ENST00000557307 SLC17A8Q8NDX2 589 aa12.75□□□□□ -0.37
SYNE2-227ENST00000557307 SCLYQ96I15 445 aa12.75□□□□□ -0.37
SYNE2-227ENST00000557307 ZFP91Q96JP5 570 aaPredicted RBP12.75□□□□□ -0.37
SYNE2-227ENST00000557307 CDX2Q99626 313 aaPredicted RBP12.75□□□□□ -0.37
SYNE2-227ENST00000557307 UBAC1Q9BSL1 405 aa12.75□□□□□ -0.37
SYNE2-227ENST00000557307 NOC4LQ9BVI4 516 aaKnown RBP12.75□□□□□ -0.37
SYNE2-227ENST00000557307 KRT23Q9C075 422 aa12.75□□□□□ -0.37
SYNE2-227ENST00000557307 TRMT13Q9NUP7 481 aaKnown RBP12.75□□□□□ -0.37
SYNE2-227ENST00000557307 CXXC1Q9P0U4 656 aaPredicted RBP12.75□□□□□ -0.37
SYNE2-227ENST00000557307 CTNNA3Q9UI47 895 aa12.75□□□□□ -0.37
SYNE2-227ENST00000557307 TRANK1O15050 2925 aa12.74□□□□□ -0.37
SYNE2-227ENST00000557307 CYTH3O43739 400 aa12.74□□□□□ -0.37
SYNE2-227ENST00000557307 DHX16O60231 1041 aaKnown RBP12.74□□□□□ -0.37
SYNE2-227ENST00000557307 CYP2C9P11712 490 aa12.74□□□□□ -0.37
SYNE2-227ENST00000557307 LY6KQ17RY6 165 aa12.74□□□□□ -0.37
SYNE2-227ENST00000557307 RASIP1Q5U651 963 aa12.74□□□□□ -0.37
SYNE2-227ENST00000557307 CCDC62Q6P9F0 684 aa12.74□□□□□ -0.37
SYNE2-227ENST00000557307 ZNF365Q70YC5 407 aa12.74□□□□□ -0.37
SYNE2-227ENST00000557307 FBXO11Q86XK2 927 aa12.74□□□□□ -0.37
SYNE2-227ENST00000557307 MB21D2Q8IYB1 491 aaPredicted RBP12.74□□□□□ -0.37
SYNE2-227ENST00000557307 IL31RAQ8NI17 732 aa12.74□□□□□ -0.37
SYNE2-227ENST00000557307 MTMR8Q96EF0 704 aa12.74□□□□□ -0.37
SYNE2-227ENST00000557307 SEMA6BQ9H3T3 888 aa12.74□□□□□ -0.37
SYNE2-227ENST00000557307 CNNM2Q9H8M5 875 aa12.74□□□□□ -0.37
SYNE2-227ENST00000557307 Q9Y3F1 56 aa12.74□□□□□ -0.37
SYNE2-227ENST00000557307 COL4A4P53420 1690 aaPredicted RBP12.73□□□□□ -0.37
SYNE2-227ENST00000557307 PALM3A6NDB9 673 aaPredicted RBP12.73□□□□□ -0.37
SYNE2-227ENST00000557307 KLRF2D3W0D1 207 aa12.73□□□□□ -0.37
SYNE2-227ENST00000557307 TLR3O15455 904 aaKnown RBP12.73□□□□□ -0.37
SYNE2-227ENST00000557307 SORBS3O60504 671 aa12.73□□□□□ -0.37
SYNE2-227ENST00000557307 EIF2AK2P19525 551 aaKnown RBP12.73□□□□□ -0.37
SYNE2-227ENST00000557307 DNAJB2P25686 324 aa12.73□□□□□ -0.37
SYNE2-227ENST00000557307 ARHGAP1Q07960 439 aa12.73□□□□□ -0.37
SYNE2-227ENST00000557307 GRM4Q14833 912 aa12.73□□□□□ -0.37
SYNE2-227ENST00000557307 PPP2R5BQ15173 497 aa12.73□□□□□ -0.37
SYNE2-227ENST00000557307 CCDC178Q5BJE1 867 aa12.73□□□□□ -0.37
SYNE2-227ENST00000557307 SEPT14Q6ZU15 432 aa12.73□□□□□ -0.37
SYNE2-227ENST00000557307 HOMER1Q86YM7 354 aa12.73□□□□□ -0.37
SYNE2-227ENST00000557307 DNERQ8NFT8 737 aa12.73□□□□□ -0.37
SYNE2-227ENST00000557307 PIGSQ96S52 555 aa12.73□□□□□ -0.37
SYNE2-227ENST00000557307 MYL10Q9BUA6 226 aa12.73□□□□□ -0.37
SYNE2-227ENST00000557307 ALDH8A1Q9H2A2 487 aaPredicted RBP12.73□□□□□ -0.37
SYNE2-227ENST00000557307 HIPK3Q9H422 1215 aa12.73□□□□□ -0.37
SYNE2-227ENST00000557307 RBM8AQ9Y5S9 174 aaKnown RBP12.73□□□□□ -0.37
SYNE2-227ENST00000557307 SIP14410 1827 aa12.73□□□□□ -0.37
SYNE2-227ENST00000557307 LOC102724159A0A0B4J2E5 919 aa12.72□□□□□ -0.37
SYNE2-227ENST00000557307 CABYRO75952 493 aa12.72□□□□□ -0.37
SYNE2-227ENST00000557307 RGS20O76081 388 aa12.72□□□□□ -0.37
SYNE2-227ENST00000557307 CFBP00751 764 aa12.72□□□□□ -0.37
SYNE2-227ENST00000557307 TXNP10599 105 aaKnown RBP12.72□□□□□ -0.37
SYNE2-227ENST00000557307 HOXA13P31271 388 aaPredicted RBP12.72□□□□□ -0.37
SYNE2-227ENST00000557307 HSD17B4P51659 736 aa12.72□□□□□ -0.37
SYNE2-227ENST00000557307 PPIGQ13427 754 aaKnown RBP eCLIP12.72□□□□□ -0.37
SYNE2-227ENST00000557307 GRIN2CQ14957 1233 aa12.72□□□□□ -0.37
SYNE2-227ENST00000557307 PWP2Q15269 919 aaKnown RBP12.72□□□□□ -0.37
SYNE2-227ENST00000557307 NBPF20Q3BBV1 942 aa12.72□□□□□ -0.37
SYNE2-227ENST00000557307 RGS22Q8NE09 1264 aa12.72□□□□□ -0.37
SYNE2-227ENST00000557307 SCFD2Q8WU76 684 aa12.72□□□□□ -0.37
SYNE2-227ENST00000557307 PIBF1Q8WXW3 757 aa12.72□□□□□ -0.37
SYNE2-227ENST00000557307 GPKOWQ92917 476 aaPredicted RBP eCLIP12.72□□□□□ -0.37
SYNE2-227ENST00000557307 MAP4K1Q92918 833 aa12.72□□□□□ -0.37
SYNE2-227ENST00000557307 CTAGE1Q96RT6 745 aa12.72□□□□□ -0.37
SYNE2-227ENST00000557307 PBX4Q9BYU1 374 aa12.72□□□□□ -0.37
SYNE2-227ENST00000557307 LSG1Q9H089 658 aaKnown RBP12.72□□□□□ -0.37
SYNE2-227ENST00000557307 IL23AQ9NPF7 189 aa12.72□□□□□ -0.37
SYNE2-227ENST00000557307 PXMP2Q9NR77 195 aa12.72□□□□□ -0.37
SYNE2-227ENST00000557307 A6NJR5 290 aa12.71□□□□□ -0.37
SYNE2-227ENST00000557307 IFIT3O14879 490 aaKnown RBP12.71□□□□□ -0.37
SYNE2-227ENST00000557307 MMP3P08254 477 aa12.71□□□□□ -0.37
SYNE2-227ENST00000557307 TROAPQ12815 778 aa12.71□□□□□ -0.37
SYNE2-227ENST00000557307 RAB11FIP4Q86YS3 637 aa12.71□□□□□ -0.37
SYNE2-227ENST00000557307 TMEM199Q8N511 208 aa12.71□□□□□ -0.37
SYNE2-227ENST00000557307 USP38Q8NB14 1042 aa12.71□□□□□ -0.37
SYNE2-227ENST00000557307 AFG1LQ8WV93 481 aa12.71□□□□□ -0.37
SYNE2-227ENST00000557307 KAT2BQ92831 832 aa12.71□□□□□ -0.37
SYNE2-227ENST00000557307 RMDN3Q96TC7 470 aa12.71□□□□□ -0.37
SYNE2-227ENST00000557307 BCAS3Q9H6U6 928 aa12.71□□□□□ -0.37
SYNE2-227ENST00000557307 POLR3EQ9NVU0 708 aa12.71□□□□□ -0.37
SYNE2-227ENST00000557307 U3KPZ7 1027 aaPredicted RBP12.71□□□□□ -0.37
SYNE2-227ENST00000557307 ZBTB5O15062 677 aa12.7□□□□□ -0.38
SYNE2-227ENST00000557307 ZEB2O60315 1214 aa12.7□□□□□ -0.38
SYNE2-227ENST00000557307 RXRAP19793 462 aa12.7□□□□□ -0.38
SYNE2-227ENST00000557307 NT5C2P49902 561 aa12.7□□□□□ -0.38
SYNE2-227ENST00000557307 CPT1AP50416 773 aa12.7□□□□□ -0.38
SYNE2-227ENST00000557307 CHMP4BP1P59074 171 aa12.7□□□□□ -0.38
SYNE2-227ENST00000557307 GHRHRQ02643 423 aa12.7□□□□□ -0.38
SYNE2-227ENST00000557307 WTAPQ15007 396 aa12.7□□□□□ -0.38
SYNE2-227ENST00000557307 FAM47CQ5HY64 1035 aa12.7□□□□□ -0.38
SYNE2-227ENST00000557307 OTOP2Q7RTS6 562 aa12.7□□□□□ -0.38
SYNE2-227ENST00000557307 IGDCC4Q8TDY8 1250 aa12.7□□□□□ -0.38
SYNE2-227ENST00000557307 RUFY2Q8WXA3 655 aa12.7□□□□□ -0.38
SYNE2-227ENST00000557307 PDCD2LQ9BRP1 358 aa12.7□□□□□ -0.38
SYNE2-227ENST00000557307 MTG1Q9BT17 334 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-227ENST00000557307 AMNQ9BXJ7 453 aa12.7□□□□□ -0.38
SYNE2-227ENST00000557307 RIOX1Q9H6W3 641 aa12.7□□□□□ -0.38
SYNE2-227ENST00000557307 LY9Q9HBG7 655 aa12.7□□□□□ -0.38
SYNE2-227ENST00000557307 YBX2Q9Y2T7 364 aaKnown RBP12.7□□□□□ -0.38
SYNE2-227ENST00000557307 MRPL11Q9Y3B7 192 aaKnown RBP12.7□□□□□ -0.38
SYNE2-227ENST00000557307 TELO2Q9Y4R8 837 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms