RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	LCHN	A4D1U4	455 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	PI4K2B	G5E9Z4	385 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	SMARCA5	O60264	1052 aa	Predicted RBP	10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	RAB11FIP3	O75154	756 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	PFKM	P08237	780 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	MYL3	P08590	195 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	IQCF3	P0C7M6	154 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	SUPT20HL2	P0C7V6	817 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	FDX1	P10109	184 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	ACTN1	P12814	892 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	MCC	P23508	829 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	STAT2	P52630	851 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	PURA	Q00577	322 aa	Known RBP	10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	NBPF20	Q3BBV1	942 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	DUSP28	Q4G0W2	176 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	ZSCAN25	Q6NSZ9	544 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	GIMAP6	Q6P9H5	292 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	KCTD1	Q719H9	257 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	RASGRP2	Q7LDG7	609 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	RPAP2	Q8IXW5	612 aa	Predicted RBP	10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	PHOSPHO2	Q8TCD6	241 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	CHURC1	Q8WUH1	139 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	STAG1	Q8WVM7	1258 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	SLC9A7	Q96T83	725 aa		10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	FTO	Q9C0B1	505 aa	Known RBP eCLIP	10.29	□□□□□ -0.76
SYNE2-222	ENST00000556725	IK	Q13123	557 aa	Predicted RBP	10.28	□□□□□ -0.76
SYNE2-222	ENST00000556725	GPNMB	Q14956	572 aa		10.28	□□□□□ -0.76
SYNE2-222	ENST00000556725	TKFC	Q3LXA3	575 aa		10.28	□□□□□ -0.76
SYNE2-222	ENST00000556725	FAM47C	Q5HY64	1035 aa		10.28	□□□□□ -0.76
SYNE2-222	ENST00000556725	NSMF	Q6X4W1	530 aa		10.28	□□□□□ -0.76
SYNE2-222	ENST00000556725	FAM160B2	Q86V87	743 aa		10.28	□□□□□ -0.76
SYNE2-222	ENST00000556725	SPRYD3	Q8NCJ5	442 aa		10.28	□□□□□ -0.76
SYNE2-222	ENST00000556725	NEDD1	Q8NHV4	660 aa		10.28	□□□□□ -0.76
SYNE2-222	ENST00000556725	MORC4	Q8TE76	937 aa		10.28	□□□□□ -0.76
SYNE2-222	ENST00000556725	GDPD5	Q8WTR4	605 aa		10.28	□□□□□ -0.76
SYNE2-222	ENST00000556725	WDR11	Q9BZH6	1224 aa		10.28	□□□□□ -0.76
SYNE2-222	ENST00000556725	VTA1	Q9NP79	307 aa		10.28	□□□□□ -0.76
SYNE2-222	ENST00000556725	POLR3E	Q9NVU0	708 aa		10.28	□□□□□ -0.76
SYNE2-222	ENST00000556725	COL4A4	P53420	1690 aa	Predicted RBP	10.28	□□□□□ -0.76
SYNE2-222	ENST00000556725	KIF28P	B7ZC32	967 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725		M0R2C6	588 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	ARHGAP33	O14559	1287 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	APP	P05067	770 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	TSPY3	P0CV98	308 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	TSPY8	P0CW00	308 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	SLC1A4	P43007	532 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	TDO2	P48775	406 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	TFAP4	Q01664	338 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	BAAT	Q14032	418 aa	Predicted RBP	10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	RCSD1	Q6JBY9	416 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	FBXO22	Q8NEZ5	403 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	COPS5	Q92905	334 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	GMCL1	Q96IK5	515 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	MTG1	Q9BT17	334 aa	Predicted RBP	10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	INCENP	Q9NQS7	918 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	PRR12	Q9ULL5	1215 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	SYNPO2	Q9UMS6	1093 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	MTMR7	Q9Y216	660 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	PCDHGA4	Q9Y5G9	962 aa		10.27	□□□□□ -0.77
SYNE2-222	ENST00000556725	SCN10A	Q9Y5Y9	1956 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	RBM47	A0AV96	593 aa	Known RBP	10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	PATL2	C9JE40	543 aa	Known RBP	10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	CCER2	I3L3R5	266 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	TK2	O00142	265 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	GPAA1	O43292	621 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	NMT2	O60551	498 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	PLA2G6	O60733	806 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	RFC2	P35250	354 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	ALDH5A1	P51649	535 aa	Predicted RBP	10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	DEFB103A	P81534	67 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	TCTN1	Q2MV58	587 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	TTBK2	Q6IQ55	1244 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	IFNL3	Q8IZI9	196 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	KBTBD3	Q8NAB2	608 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	RETREG2	Q8NC44	543 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	OR6J1	Q8NGC5	347 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	APPBP2	Q92624	585 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	SEC62	Q99442	399 aa	Known RBP	10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	SUGCT	Q9HAC7	445 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	GPHN	Q9NQX3	736 aa	Predicted RBP	10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	IL17RB	Q9NRM6	502 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	ZBTB40	Q9NUA8	1239 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	CCPG1	Q9ULG6	757 aa		10.26	□□□□□ -0.77
SYNE2-222	ENST00000556725	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	C2orf72	A6NCS6	295 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	NFIB	O00712	420 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	RNF113A	O15541	343 aa	Known RBP	10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	HR	O43593	1189 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	HMMR	O75330	724 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	SLC16A2	P36021	539 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	CPT1A	P50416	773 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	CHMP4BP1	P59074	171 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	WDR5	P61964	334 aa	Known RBP	10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	TSHZ3	Q63HK5	1081 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	NFRKB	Q6P4R8	1299 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	FAM178B	Q8IXR5	827 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	CTAGE1	Q96RT6	745 aa		10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	UBE2Z	Q9H832	354 aa	Predicted RBP	10.25	□□□□□ -0.77
SYNE2-222	ENST00000556725	ZNF287	Q9HBT7	754 aa		10.25	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms