RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 RARBP10826 455 aa16.37■□□□□ 0.21
SHMT2-217ENST00000555116 PDE4DQ08499 809 aa16.37■□□□□ 0.21
SHMT2-217ENST00000555116 STK3Q13188 491 aa16.37■□□□□ 0.21
SHMT2-217ENST00000555116 PKN1Q16512 942 aa16.37■□□□□ 0.21
SHMT2-217ENST00000555116 PFKFB3Q16875 520 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-217ENST00000555116 DIS3LQ8TF46 1054 aaKnown RBP16.37■□□□□ 0.21
SHMT2-217ENST00000555116 PHKBQ93100 1093 aa16.37■□□□□ 0.21
SHMT2-217ENST00000555116 IWS1Q96ST2 819 aa16.37■□□□□ 0.21
SHMT2-217ENST00000555116 PDGFCQ9NRA1 345 aa16.37■□□□□ 0.21
SHMT2-217ENST00000555116 STXBP3O00186 592 aa16.37■□□□□ 0.21
SHMT2-217ENST00000555116 PFKFB2O60825 505 aa16.37■□□□□ 0.21
SHMT2-217ENST00000555116 ADCYAP1R1P41586 468 aa16.37■□□□□ 0.21
SHMT2-217ENST00000555116 MLLT1Q03111 559 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-217ENST00000555116 ARHGEF16Q5VV41 709 aa16.37■□□□□ 0.21
SHMT2-217ENST00000555116 USP17L6PQ6QN14 398 aa16.37■□□□□ 0.21
SHMT2-217ENST00000555116 MPHOSPH6Q99547 160 aaKnown RBP16.37■□□□□ 0.21
SHMT2-217ENST00000555116 RNF26Q9BY78 433 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-217ENST00000555116 PSTPIP2Q9H939 334 aa16.37■□□□□ 0.21
SHMT2-217ENST00000555116 BARHL2Q9NY43 387 aa16.37■□□□□ 0.21
SHMT2-217ENST00000555116 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-217ENST00000555116 RBM47A0AV96 593 aaKnown RBP16.36■□□□□ 0.21
SHMT2-217ENST00000555116 B4DLN1 442 aa16.36■□□□□ 0.21
SHMT2-217ENST00000555116 hCG_1984214I3L0E3 225 aa16.36■□□□□ 0.21
SHMT2-217ENST00000555116 DUSP11O75319 330 aaKnown RBP16.36■□□□□ 0.21
SHMT2-217ENST00000555116 SCG2P13521 617 aa16.36■□□□□ 0.21
SHMT2-217ENST00000555116 EIF2AK2P19525 551 aaKnown RBP16.36■□□□□ 0.21
SHMT2-217ENST00000555116 MRPL12P52815 198 aaKnown RBP16.36■□□□□ 0.21
SHMT2-217ENST00000555116 SCRN1Q12765 414 aa16.36■□□□□ 0.21
SHMT2-217ENST00000555116 PPP1R18Q6NYC8 613 aa16.36■□□□□ 0.21
SHMT2-217ENST00000555116 FCHSD1Q86WN1 690 aa16.36■□□□□ 0.21
SHMT2-217ENST00000555116 ZNF713Q8N859 430 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-217ENST00000555116 PAWRQ96IZ0 340 aaKnown RBP16.36■□□□□ 0.21
SHMT2-217ENST00000555116 PDCD2LQ9BRP1 358 aa16.36■□□□□ 0.21
SHMT2-217ENST00000555116 SLKQ9H2G2 1235 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-217ENST00000555116 RBM27Q9P2N5 1060 aaKnown RBP16.36■□□□□ 0.21
SHMT2-217ENST00000555116 FRMPD4Q14CM0 1322 aa16.36■□□□□ 0.21
SHMT2-217ENST00000555116 MYH7BA7E2Y1 1941 aa16.36■□□□□ 0.21
SHMT2-217ENST00000555116 PPFIA3O75145 1194 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 NR3C2P08235 984 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 NAPAP54920 295 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 IQSEC1Q6DN90 963 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 ARRDC4Q8NCT1 418 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 CUL5Q93034 780 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 SLC26A6Q9BXS9 759 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 XPNPEP3Q9NQH7 507 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 ADAMTS4O75173 837 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 LARGE1O95461 756 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 PGK1P00558 417 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 TNFAIP2Q03169 654 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 LRRC41Q15345 812 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 ME3Q16798 604 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 TMEM63BQ5T3F8 832 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 GJC2Q5T442 439 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-217ENST00000555116 NOL8Q76FK4 1167 aaKnown RBP16.35■□□□□ 0.21
SHMT2-217ENST00000555116 IL31RAQ8NI17 732 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 SMARCC2Q8TAQ2 1214 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 UPF3AQ9H1J1 476 aaKnown RBP16.35■□□□□ 0.21
SHMT2-217ENST00000555116 UPF2Q9HAU5 1272 aaKnown RBP16.35■□□□□ 0.21
SHMT2-217ENST00000555116 GNEQ9Y223 722 aaKnown RBP16.35■□□□□ 0.21
SHMT2-217ENST00000555116 SYNRGQ9UMZ2 1314 aa16.35■□□□□ 0.21
SHMT2-217ENST00000555116 DNM1LO00429 736 aa16.34■□□□□ 0.21
SHMT2-217ENST00000555116 CPLX1O14810 134 aa16.34■□□□□ 0.21
SHMT2-217ENST00000555116 COL6A1P12109 1028 aa16.34■□□□□ 0.21
SHMT2-217ENST00000555116 SMPD1P17405 629 aa16.34■□□□□ 0.21
SHMT2-217ENST00000555116 PGM5Q15124 567 aa16.34■□□□□ 0.21
SHMT2-217ENST00000555116 NECAB2Q7Z6G3 386 aa16.34■□□□□ 0.21
SHMT2-217ENST00000555116 RIC8AQ9NPQ8 531 aa16.34■□□□□ 0.21
SHMT2-217ENST00000555116 MKI67P46013 3256 aaKnown RBP16.34■□□□□ 0.21
SHMT2-217ENST00000555116 PTGS1P23219 599 aa16.33■□□□□ 0.21
SHMT2-217ENST00000555116 AKAP17AQ02040 695 aaKnown RBP16.33■□□□□ 0.21
SHMT2-217ENST00000555116 SSRP1Q08945 709 aaKnown RBP16.33■□□□□ 0.21
SHMT2-217ENST00000555116 STXBP2Q15833 593 aa16.33■□□□□ 0.21
SHMT2-217ENST00000555116 UBE2SQ16763 222 aa16.33■□□□□ 0.21
SHMT2-217ENST00000555116 VSIG10LQ86VR7 867 aa16.33■□□□□ 0.21
SHMT2-217ENST00000555116 KLHDC9Q8NEP7 349 aa16.33■□□□□ 0.21
SHMT2-217ENST00000555116 TBC1D32Q96NH3 1257 aa16.33■□□□□ 0.21
SHMT2-217ENST00000555116 SMCO2A6NFE2 343 aa16.33■□□□□ 0.2
SHMT2-217ENST00000555116 CTAGE5O15320 804 aa16.33■□□□□ 0.2
SHMT2-217ENST00000555116 EIF3JO75822 258 aaKnown RBP16.33■□□□□ 0.2
SHMT2-217ENST00000555116 GJA9P57773 515 aa16.33■□□□□ 0.2
SHMT2-217ENST00000555116 NKX3-2P78367 333 aa16.33■□□□□ 0.2
SHMT2-217ENST00000555116 IRX5P78411 483 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-217ENST00000555116 DUSP28Q4G0W2 176 aa16.33■□□□□ 0.2
SHMT2-217ENST00000555116 CPLX2Q6PUV4 134 aaKnown RBP16.33■□□□□ 0.2
SHMT2-217ENST00000555116 TEX2Q8IWB9 1127 aa16.33■□□□□ 0.2
SHMT2-217ENST00000555116 TRIM22Q8IYM9 498 aa16.33■□□□□ 0.2
SHMT2-217ENST00000555116 NECAB1Q8N987 351 aa16.33■□□□□ 0.2
SHMT2-217ENST00000555116 WDR11Q9BZH6 1224 aa16.33■□□□□ 0.2
SHMT2-217ENST00000555116 C11orf49Q9H6J7 331 aa16.33■□□□□ 0.2
SHMT2-217ENST00000555116 TNRC18O15417 2968 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-217ENST00000555116 ESYT2A0FGR8 921 aa16.32■□□□□ 0.2
SHMT2-217ENST00000555116 MYADML2A6NDP7 307 aa16.32■□□□□ 0.2
SHMT2-217ENST00000555116 CTDNEP1O95476 244 aa16.32■□□□□ 0.2
SHMT2-217ENST00000555116 MYCLP12524 364 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-217ENST00000555116 ADCY7P51828 1080 aa16.32■□□□□ 0.2
SHMT2-217ENST00000555116 SCFD2Q8WU76 684 aa16.32■□□□□ 0.2
SHMT2-217ENST00000555116 GTF3C6Q969F1 213 aa16.32■□□□□ 0.2
SHMT2-217ENST00000555116 KBTBD13C9JR72 458 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 RGS20O76081 388 aa16.31■□□□□ 0.2
SHMT2-217ENST00000555116 ARIH2O95376 493 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms