RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 ZNF318Q5VUA4 2279 aa12.85□□□□□ -0.35
SHMT2-216ENST00000554975 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-216ENST00000554975 PRKAB2O43741 272 aa12.84□□□□□ -0.35
SHMT2-216ENST00000554975 LARGE1O95461 756 aa12.84□□□□□ -0.35
SHMT2-216ENST00000554975 CA3P07451 260 aa12.84□□□□□ -0.35
SHMT2-216ENST00000554975 POU3F3P20264 500 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-216ENST00000554975 UVSSAQ2YD98 709 aa12.84□□□□□ -0.35
SHMT2-216ENST00000554975 FAM83BQ5T0W9 1011 aa12.84□□□□□ -0.35
SHMT2-216ENST00000554975 LARP1BQ659C4 914 aaKnown RBP12.84□□□□□ -0.35
SHMT2-216ENST00000554975 CXCL17Q6UXB2 119 aa12.84□□□□□ -0.35
SHMT2-216ENST00000554975 DHX32Q7L7V1 743 aaKnown RBP12.84□□□□□ -0.35
SHMT2-216ENST00000554975 AMOTL1Q8IY63 956 aa12.84□□□□□ -0.35
SHMT2-216ENST00000554975 FBXL16Q8N461 479 aa12.84□□□□□ -0.35
SHMT2-216ENST00000554975 MSL3Q8N5Y2 521 aaKnown RBP12.84□□□□□ -0.35
SHMT2-216ENST00000554975 RGS22Q8NE09 1264 aa12.84□□□□□ -0.35
SHMT2-216ENST00000554975 NOC4LQ9BVI4 516 aaKnown RBP12.84□□□□□ -0.35
SHMT2-216ENST00000554975 KATNBL1Q9H079 304 aa12.84□□□□□ -0.35
SHMT2-216ENST00000554975 TRPV6Q9H1D0 765 aa12.84□□□□□ -0.35
SHMT2-216ENST00000554975 MTIF3Q9H2K0 278 aaKnown RBP12.84□□□□□ -0.35
SHMT2-216ENST00000554975 DCP1AQ9NPI6 582 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-216ENST00000554975 TPCN1Q9ULQ1 816 aa12.84□□□□□ -0.35
SHMT2-216ENST00000554975 SLC4A7Q9Y6M7 1214 aa12.84□□□□□ -0.35
SHMT2-216ENST00000554975 CYP2D7A0A087X1C5 515 aa12.83□□□□□ -0.36
SHMT2-216ENST00000554975 ZBBXA8MT70 800 aa12.83□□□□□ -0.36
SHMT2-216ENST00000554975 B4GALT4O60513 344 aa12.83□□□□□ -0.36
SHMT2-216ENST00000554975 CYP21A2P08686 494 aa12.83□□□□□ -0.36
SHMT2-216ENST00000554975 EEF2P13639 858 aaKnown RBP12.83□□□□□ -0.36
SHMT2-216ENST00000554975 TOB2Q14106 344 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-216ENST00000554975 TTLL4Q14679 1199 aa12.83□□□□□ -0.36
SHMT2-216ENST00000554975 IMMTQ16891 758 aaKnown RBP12.83□□□□□ -0.36
SHMT2-216ENST00000554975 ATL3Q6DD88 541 aa12.83□□□□□ -0.36
SHMT2-216ENST00000554975 SNRNP48Q6IEG0 339 aaKnown RBP12.83□□□□□ -0.36
SHMT2-216ENST00000554975 NUP88Q99567 741 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-216ENST00000554975 AGXT2Q9BYV1 514 aa12.83□□□□□ -0.36
SHMT2-216ENST00000554975 PUS7LQ9H0K6 701 aaKnown RBP12.83□□□□□ -0.36
SHMT2-216ENST00000554975 ZSCAN16Q9H4T2 348 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-216ENST00000554975 SLC4A4Q9Y6R1 1079 aa12.83□□□□□ -0.36
SHMT2-216ENST00000554975 ZMYM6O95789 1325 aa12.83□□□□□ -0.36
SHMT2-216ENST00000554975 SYCE3A1L190 88 aa12.82□□□□□ -0.36
SHMT2-216ENST00000554975 PI4K2BG5E9Z4 385 aa12.82□□□□□ -0.36
SHMT2-216ENST00000554975 FIBPO43427 364 aa12.82□□□□□ -0.36
SHMT2-216ENST00000554975 DHX16O60231 1041 aaKnown RBP12.82□□□□□ -0.36
SHMT2-216ENST00000554975 CPA1P15085 419 aa12.82□□□□□ -0.36
SHMT2-216ENST00000554975 ATP2A2P16615 1042 aaKnown RBP12.82□□□□□ -0.36
SHMT2-216ENST00000554975 CLCN1P35523 988 aa12.82□□□□□ -0.36
SHMT2-216ENST00000554975 DDX11Q96FC9 970 aa12.82□□□□□ -0.36
SHMT2-216ENST00000554975 AGBL1Q96MI9 1066 aa12.82□□□□□ -0.36
SHMT2-216ENST00000554975 SH2D4AQ9H788 454 aa12.82□□□□□ -0.36
SHMT2-216ENST00000554975 ATP8A2Q9NTI2 1148 aa12.82□□□□□ -0.36
SHMT2-216ENST00000554975 COG5Q9UP83 839 aa12.82□□□□□ -0.36
SHMT2-216ENST00000554975 ESPNB1AK53 854 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 RBAK-RBAKDNI3L0D1 243 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 GTPBP6O43824 516 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-216ENST00000554975 RAD21O60216 631 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 PFKFB2O60825 505 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 PSMC6P62333 389 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 NKX3-2P78367 333 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 ST3GAL1Q11201 340 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 ITGA7Q13683 1181 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 TMEM63BQ5T3F8 832 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 Q6ZUG5 572 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 ARMCX2Q7L311 632 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 ZNF467Q7Z7K2 595 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-216ENST00000554975 ARNTL2Q8WYA1 636 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 HLA-CQ95604 372 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 TEX13BQ9BXU2 312 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 ABHD16BQ9H3Z7 469 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 SPC25Q9HBM1 224 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 SWAP70Q9UH65 585 aa12.81□□□□□ -0.36
SHMT2-216ENST00000554975 SCN10AQ9Y5Y9 1956 aa12.8□□□□□ -0.36
SHMT2-216ENST00000554975 USP17L12C9JPN9 530 aa12.8□□□□□ -0.36
SHMT2-216ENST00000554975 USP17L21D6R901 530 aa12.8□□□□□ -0.36
SHMT2-216ENST00000554975 H3BQV1 296 aa12.8□□□□□ -0.36
SHMT2-216ENST00000554975 LPXNO60711 386 aa12.8□□□□□ -0.36
SHMT2-216ENST00000554975 APPP05067 770 aa12.8□□□□□ -0.36
SHMT2-216ENST00000554975 HSPD1P10809 573 aaKnown RBP12.8□□□□□ -0.36
SHMT2-216ENST00000554975 MSNP26038 577 aaKnown RBP12.8□□□□□ -0.36
SHMT2-216ENST00000554975 MCM5P33992 734 aa12.8□□□□□ -0.36
SHMT2-216ENST00000554975 COPB2P35606 906 aa12.8□□□□□ -0.36
SHMT2-216ENST00000554975 CDK8P49336 464 aa12.8□□□□□ -0.36
SHMT2-216ENST00000554975 TAP1Q03518 808 aa12.8□□□□□ -0.36
SHMT2-216ENST00000554975 GRB10Q13322 594 aa12.8□□□□□ -0.36
SHMT2-216ENST00000554975 TMEM67Q5HYA8 995 aa12.8□□□□□ -0.36
SHMT2-216ENST00000554975 RALYLQ86SE5 291 aaKnown RBP12.8□□□□□ -0.36
SHMT2-216ENST00000554975 CCDC144CPQ8IYA2 1237 aa12.8□□□□□ -0.36
SHMT2-216ENST00000554975 ZNF274Q96GC6 653 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-216ENST00000554975 PDLIM2Q96JY6 352 aa12.8□□□□□ -0.36
SHMT2-216ENST00000554975 SNX27Q96L92 541 aa12.8□□□□□ -0.36
SHMT2-216ENST00000554975 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.8□□□□□ -0.365e-8■■■□□ 18.8
SHMT2-216ENST00000554975 DDX19AQ9NUU7 478 aaKnown RBP12.8□□□□□ -0.36
SHMT2-216ENST00000554975 SIP14410 1827 aa12.8□□□□□ -0.36
SHMT2-216ENST00000554975 GOLGA6L4A6NEF3 574 aa12.79□□□□□ -0.36
SHMT2-216ENST00000554975 GPAA1O43292 621 aa12.79□□□□□ -0.36
SHMT2-216ENST00000554975 CNTN2Q02246 1040 aa12.79□□□□□ -0.36
SHMT2-216ENST00000554975 DEFB128Q7Z7B8 93 aa12.79□□□□□ -0.36
SHMT2-216ENST00000554975 ZSCAN30Q86W11 494 aa12.79□□□□□ -0.36
SHMT2-216ENST00000554975 CPXCR1Q8N123 301 aa12.79□□□□□ -0.36
SHMT2-216ENST00000554975 NECAB1Q8N987 351 aa12.79□□□□□ -0.36
SHMT2-216ENST00000554975 SMARCC2Q8TAQ2 1214 aa12.79□□□□□ -0.36
SHMT2-216ENST00000554975 OSBP2Q969R2 916 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms