RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 RNF41Q9H4P4 317 aaPredicted RBP12.38□□□□□ -0.43
SHMT2-215ENST00000554656 PRDM12Q9H4Q4 367 aa12.38□□□□□ -0.43
SHMT2-215ENST00000554656 PRDM6Q9NQX0 595 aa12.38□□□□□ -0.43
SHMT2-215ENST00000554656 COL20A1Q9P218 1284 aa12.38□□□□□ -0.43
SHMT2-215ENST00000554656 TRANK1O15050 2925 aa12.38□□□□□ -0.43
SHMT2-215ENST00000554656 MYH7BA7E2Y1 1941 aa12.38□□□□□ -0.43
SHMT2-215ENST00000554656 RBAK-RBAKDNI3L0D1 243 aa12.37□□□□□ -0.43
SHMT2-215ENST00000554656 ZNF213O14771 459 aa12.37□□□□□ -0.43
SHMT2-215ENST00000554656 MYL3P08590 195 aa12.37□□□□□ -0.43
SHMT2-215ENST00000554656 MFAP1P55081 439 aaKnown RBP12.37□□□□□ -0.43
SHMT2-215ENST00000554656 PDE4DQ08499 809 aa12.37□□□□□ -0.43
SHMT2-215ENST00000554656 ADGRE1Q14246 886 aa12.37□□□□□ -0.43
SHMT2-215ENST00000554656 PPP2R5BQ15173 497 aa12.37□□□□□ -0.43
SHMT2-215ENST00000554656 CDC37Q16543 378 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-215ENST00000554656 GPATCH4Q5T3I0 446 aaKnown RBP12.37□□□□□ -0.43
SHMT2-215ENST00000554656 DGKHQ86XP1 1220 aa12.37□□□□□ -0.43
SHMT2-215ENST00000554656 DNERQ8NFT8 737 aa12.37□□□□□ -0.43
SHMT2-215ENST00000554656 ANKS1AQ92625 1134 aa12.37□□□□□ -0.43
SHMT2-215ENST00000554656 SEZ6LQ9BYH1 1024 aa12.37□□□□□ -0.43
SHMT2-215ENST00000554656 NKX2-4Q9H2Z4 354 aa12.37□□□□□ -0.43
SHMT2-215ENST00000554656 POLR3EQ9NVU0 708 aa12.37□□□□□ -0.43
SHMT2-215ENST00000554656 BAZ2BQ9UIF8 2168 aaKnown RBP12.37□□□□□ -0.43
SHMT2-215ENST00000554656 TNKSO95271 1327 aa12.37□□□□□ -0.43
SHMT2-215ENST00000554656 A6NJR5 290 aa12.36□□□□□ -0.43
SHMT2-215ENST00000554656 FGBP02675 491 aa12.36□□□□□ -0.43
SHMT2-215ENST00000554656 CPT1AP50416 773 aa12.36□□□□□ -0.43
SHMT2-215ENST00000554656 RABGGTBP53611 331 aa12.36□□□□□ -0.43
SHMT2-215ENST00000554656 TTLL4Q14679 1199 aa12.36□□□□□ -0.43
SHMT2-215ENST00000554656 NBPF20Q3BBV1 942 aa12.36□□□□□ -0.43
SHMT2-215ENST00000554656 CCDC62Q6P9F0 684 aa12.36□□□□□ -0.43
SHMT2-215ENST00000554656 ADGRF4Q8IZF3 695 aa12.36□□□□□ -0.43
SHMT2-215ENST00000554656 SCFD2Q8WU76 684 aa12.36□□□□□ -0.43
SHMT2-215ENST00000554656 CTAGE1Q96RT6 745 aa12.36□□□□□ -0.43
SHMT2-215ENST00000554656 MTG1Q9BT17 334 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-215ENST00000554656 DSCC1Q9BVC3 393 aa12.36□□□□□ -0.43
SHMT2-215ENST00000554656 DIAPH3Q9NSV4 1193 aa12.36□□□□□ -0.43
SHMT2-215ENST00000554656 ZSWIM5Q9P217 1185 aa12.36□□□□□ -0.43
SHMT2-215ENST00000554656 PNMA2Q9UL42 364 aa12.36□□□□□ -0.43
SHMT2-215ENST00000554656 RBM19Q9Y4C8 960 aaKnown RBP12.36□□□□□ -0.43
SHMT2-215ENST00000554656 MUC3AQ02505 3323 aa12.35□□□□□ -0.43
SHMT2-215ENST00000554656 OPLAHO14841 1288 aa12.35□□□□□ -0.43
SHMT2-215ENST00000554656 NKRFO15226 690 aaKnown RBP eCLIP12.35□□□□□ -0.43
SHMT2-215ENST00000554656 MYOGP15173 224 aa12.35□□□□□ -0.43
SHMT2-215ENST00000554656 RAB30Q15771 203 aa12.35□□□□□ -0.43
SHMT2-215ENST00000554656 SLC35G1Q2M3R5 365 aa12.35□□□□□ -0.43
SHMT2-215ENST00000554656 QRICH1Q2TAL8 776 aa12.35□□□□□ -0.43
SHMT2-215ENST00000554656 ASPRV1Q53RT3 343 aa12.35□□□□□ -0.43
SHMT2-215ENST00000554656 TTC22Q5TAA0 569 aa12.35□□□□□ -0.43
SHMT2-215ENST00000554656 IQCA1Q86XH1 822 aa12.35□□□□□ -0.43
SHMT2-215ENST00000554656 RGS22Q8NE09 1264 aa12.35□□□□□ -0.43
SHMT2-215ENST00000554656 SYTL5Q8TDW5 730 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-215ENST00000554656 TAAR1Q96RJ0 339 aa12.35□□□□□ -0.43
SHMT2-215ENST00000554656 ZSCAN10Q96SZ4 725 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-215ENST00000554656 COL4A4P53420 1690 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-215ENST00000554656 ABCB11O95342 1321 aa12.35□□□□□ -0.43
SHMT2-215ENST00000554656 DOCK5Q9H7D0 1870 aa12.34□□□□□ -0.43
SHMT2-215ENST00000554656 PPP1R11O60927 126 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-215ENST00000554656 TXNP10599 105 aaKnown RBP12.34□□□□□ -0.43
SHMT2-215ENST00000554656 GSPT1P15170 499 aaKnown RBP12.34□□□□□ -0.43
SHMT2-215ENST00000554656 ARHGAP1Q07960 439 aa12.34□□□□□ -0.43
SHMT2-215ENST00000554656 SEC23AQ15436 765 aa12.34□□□□□ -0.43
SHMT2-215ENST00000554656 FAM47CQ5HY64 1035 aa12.34□□□□□ -0.43
SHMT2-215ENST00000554656 NFRKBQ6P4R8 1299 aa12.34□□□□□ -0.43
SHMT2-215ENST00000554656 CYB5R4Q7L1T6 521 aa12.34□□□□□ -0.43
SHMT2-215ENST00000554656 STAG2Q8N3U4 1231 aa12.34□□□□□ -0.43
SHMT2-215ENST00000554656 MTIF3Q9H2K0 278 aaKnown RBP12.34□□□□□ -0.43
SHMT2-215ENST00000554656 KAT14Q9H8E8 782 aa12.34□□□□□ -0.43
SHMT2-215ENST00000554656 JMJD4Q9H9V9 463 aa12.34□□□□□ -0.43
SHMT2-215ENST00000554656 ARHGEF15O94989 841 aa12.33□□□□□ -0.44
SHMT2-215ENST00000554656 LY6KQ17RY6 165 aa12.33□□□□□ -0.44
SHMT2-215ENST00000554656 DEFB128Q7Z7B8 93 aa12.33□□□□□ -0.44
SHMT2-215ENST00000554656 AFG1LQ8WV93 481 aa12.33□□□□□ -0.44
SHMT2-215ENST00000554656 KAT2BQ92831 832 aa12.33□□□□□ -0.44
SHMT2-215ENST00000554656 GAS2L1Q99501 681 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-215ENST00000554656 MSRAQ9UJ68 235 aa12.33□□□□□ -0.44
SHMT2-215ENST00000554656 TAF6LQ9Y6J9 622 aa12.33□□□□□ -0.44
SHMT2-215ENST00000554656 SLC4A7Q9Y6M7 1214 aa12.33□□□□□ -0.44
SHMT2-215ENST00000554656 RAD50Q92878 1312 aa12.33□□□□□ -0.44
SHMT2-215ENST00000554656 PRRC2BQ5JSZ5 2229 aaKnown RBP12.33□□□□□ -0.44
SHMT2-215ENST00000554656 ZBBXA8MT70 800 aa12.32□□□□□ -0.44
SHMT2-215ENST00000554656 HIP1O00291 1037 aa12.32□□□□□ -0.44
SHMT2-215ENST00000554656 MMP3P08254 477 aa12.32□□□□□ -0.44
SHMT2-215ENST00000554656 PARP1P09874 1014 aaKnown RBP12.32□□□□□ -0.44
SHMT2-215ENST00000554656 SUPT20HL2P0C7V6 817 aa12.32□□□□□ -0.44
SHMT2-215ENST00000554656 EIF2AK2P19525 551 aaKnown RBP12.32□□□□□ -0.44
SHMT2-215ENST00000554656 NT5C2P49902 561 aa12.32□□□□□ -0.44
SHMT2-215ENST00000554656 IMMTQ16891 758 aaKnown RBP12.32□□□□□ -0.44
SHMT2-215ENST00000554656 CCDC178Q5BJE1 867 aa12.32□□□□□ -0.44
SHMT2-215ENST00000554656 SEPT14Q6ZU15 432 aa12.32□□□□□ -0.44
SHMT2-215ENST00000554656 FBXO11Q86XK2 927 aa12.32□□□□□ -0.44
SHMT2-215ENST00000554656 RPUSD2Q8IZ73 545 aaKnown RBP12.32□□□□□ -0.44
SHMT2-215ENST00000554656 PPM1EQ8WY54 764 aa12.32□□□□□ -0.44
SHMT2-215ENST00000554656 DHX38Q92620 1227 aaKnown RBP12.32□□□□□ -0.44
SHMT2-215ENST00000554656 MTMR8Q96EF0 704 aa12.32□□□□□ -0.44
SHMT2-215ENST00000554656 RMDN3Q96TC7 470 aa12.32□□□□□ -0.44
SHMT2-215ENST00000554656 SENP2Q9HC62 589 aa12.32□□□□□ -0.44
SHMT2-215ENST00000554656 VAT1LQ9HCJ6 419 aa12.32□□□□□ -0.44
SHMT2-215ENST00000554656 GPHNQ9NQX3 736 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-215ENST00000554656 NCOR1O75376 2440 aa12.31□□□□□ -0.44
SHMT2-215ENST00000554656 PITPNM1O00562 1244 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms