RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	CCPG1	Q9ULG6	757 aa		12.6	□□□□□ -0.39
SYNE2-208	ENST00000553289	PYCARD	Q9ULZ3	195 aa		12.6	□□□□□ -0.39
SYNE2-208	ENST00000553289	SRPRB	Q9Y5M8	271 aa	Known RBP	12.6	□□□□□ -0.39
SYNE2-208	ENST00000553289	DPCR1	Q3MIW9	517 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	DDX17	Q92841	729 aa	Known RBP	12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	DPH5	Q9H2P9	285 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	TMEM206	Q9H813	350 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	NCAPD2	Q15021	1401 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	PFDN6	O15212	129 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	APBA3	O96018	575 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	MGARP	Q8TDB4	240 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	BCAS4	Q8TDM0	211 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	KANSL2	Q9H9L4	492 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	BAIAP2L1	Q9UHR4	511 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	AFG3L2	Q9Y4W6	797 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	ABCA8	O94911	1581 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	SLC8A1	P32418	973 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	GARS	P41250	739 aa	Known RBP	12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	ARL6IP4	Q66PJ3	421 aa	Known RBP	12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	SLC35F6	Q8N357	371 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	METTL13	Q8N6R0	699 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	MAN1B1	Q9UKM7	699 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	JRKL	Q9Y4A0	524 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	KIF1B	O60333	1816 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	MYO1F	O00160	1098 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	XPOT	O43592	962 aa	Known RBP	12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	BBOX1	O75936	387 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	USPL1	Q5W0Q7	1092 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	CDKL2	Q92772	493 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	ACCS	Q96QU6	501 aa		12.59	□□□□□ -0.39
SYNE2-208	ENST00000553289	HIP1R	O75146	1068 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	RASSF7	Q02833	373 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	KIAA0825	Q8IV33	1275 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	POMGNT1	Q8WZA1	660 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	GJA10	Q969M2	543 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	SAMD9L	Q8IVG5	1584 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	CAPN9	O14815	690 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	PIK3CA	P42336	1068 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	BAG6	P46379	1132 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	GUCY2D	Q02846	1103 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	EHHADH	Q08426	723 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	DHX36	Q9H2U1	1008 aa	Known RBP	12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	WDR17	Q8IZU2	1322 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	DLAT	P10515	647 aa	Known RBP	12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	USP14	P54578	494 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	ZBED6	P86452	979 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	RBL2	Q08999	1139 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	REST	Q13127	1097 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	CDC37	Q16543	378 aa	Predicted RBP	12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	SCYL2	Q6P3W7	929 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	ANKRD35	Q8N283	1001 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	PBK	Q96KB5	322 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	PANX2	Q96RD6	677 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	NACC1	Q96RE7	527 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	ZNF148	Q9UQR1	794 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	HEG1	Q9ULI3	1381 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	EVI5	O60447	810 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	CCNE1	P24864	410 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	SCNN1D	P51172	638 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	ARHGAP4	P98171	946 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	RNASEL	Q05823	741 aa	Known RBP	12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	FAM186B	Q8IYM0	893 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	CDHR1	Q96JP9	859 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	VCX3A	Q9NNX9	186 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	FAN1	Q9Y2M0	1017 aa		12.58	□□□□□ -0.4
SYNE2-208	ENST00000553289	PTPN12	Q05209	780 aa	Known RBP	12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	ALCAM	Q13740	583 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	NECTIN1	Q15223	517 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	SEPT14	Q6ZU15	432 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	C11orf57	Q6ZUT1	292 aa	Predicted RBP	12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	MED10	Q9BTT4	135 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	ADGRL3	Q9HAR2	1447 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	CAPN7	Q9Y6W3	813 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	TCP10L2	B9ZVM9	353 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	PPEF1	O14829	653 aa	Predicted RBP	12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	HGS	O14964	777 aa	Predicted RBP	12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	VSTM4	Q8IW00	320 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	CCDC127	Q96BQ5	260 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	ZNF408	Q9H9D4	720 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	SH3GLB2	Q9NR46	395 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	THRAP3	Q9Y2W1	955 aa	Known RBP	12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	YEATS2	Q9ULM3	1422 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	GOLGA8Q	A0A0J9YX86	632 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	GOLGA8O	A6NCC3	632 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	GOLGA8N	F8WBI6	632 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	PGRMC1	O00264	195 aa	Known RBP	12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	PPP4R3CP	Q6ZMV5	832 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	ARMC9	Q7Z3E5	817 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	CEP120	Q8N960	986 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	CCHCR1	Q8TD31	782 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	ANTXR1	Q9H6X2	564 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	PALM3	A6NDB9	673 aa	Predicted RBP	12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	LRRIQ4	A6NIV6	560 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	RPS6KA2	Q15349	733 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	TRIM42	Q8IWZ5	723 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	MMS19	Q96T76	1030 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	ZNF577	Q9BSK1	485 aa		12.57	□□□□□ -0.4
SYNE2-208	ENST00000553289	HNRNPDL	O14979	420 aa	Known RBP	12.56	□□□□□ -0.4
SYNE2-208	ENST00000553289	SUN1	O94901	812 aa		12.56	□□□□□ -0.4
SYNE2-208	ENST00000553289	IL9R	Q01113	521 aa		12.56	□□□□□ -0.4

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