RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 PWP2Q15269 919 aaKnown RBP16.26■□□□□ 0.19
PTCH1-226ENST00000553011 ME3Q16798 604 aa16.26■□□□□ 0.19
PTCH1-226ENST00000553011 PFKFB3Q16875 520 aaPredicted RBP16.26■□□□□ 0.19
PTCH1-226ENST00000553011 CCDC144BQ3MJ40 725 aa16.26■□□□□ 0.19
PTCH1-226ENST00000553011 ARHGEF16Q5VV41 709 aa16.26■□□□□ 0.19
PTCH1-226ENST00000553011 NSUN6Q8TEA1 469 aaKnown RBP16.26■□□□□ 0.19
PTCH1-226ENST00000553011 TBC1D32Q96NH3 1257 aa16.26■□□□□ 0.19
PTCH1-226ENST00000553011 RNF26Q9BY78 433 aaPredicted RBP16.26■□□□□ 0.19
PTCH1-226ENST00000553011 PSTPIP2Q9H939 334 aa16.26■□□□□ 0.19
PTCH1-226ENST00000553011 PDGFCQ9NRA1 345 aa16.26■□□□□ 0.19
PTCH1-226ENST00000553011 MAP3K20Q9NYL2 800 aaKnown RBP16.26■□□□□ 0.19
PTCH1-226ENST00000553011 FAM184BQ9ULE4 1060 aa16.26■□□□□ 0.19
PTCH1-226ENST00000553011 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.25■□□□□ 0.19
PTCH1-226ENST00000553011 MEIS2O14770 477 aa16.25■□□□□ 0.19
PTCH1-226ENST00000553011 ADCY6O43306 1168 aa16.25■□□□□ 0.19
PTCH1-226ENST00000553011 FARP2O94887 1054 aaPredicted RBP16.25■□□□□ 0.19
PTCH1-226ENST00000553011 AKAP17AQ02040 695 aaKnown RBP16.25■□□□□ 0.19
PTCH1-226ENST00000553011 UBE2SQ16763 222 aa16.25■□□□□ 0.19
PTCH1-226ENST00000553011 TAPT1Q6NXT6 567 aa16.25■□□□□ 0.19
PTCH1-226ENST00000553011 NECAB1Q8N987 351 aa16.25■□□□□ 0.19
PTCH1-226ENST00000553011 SMARCC2Q8TAQ2 1214 aa16.25■□□□□ 0.19
PTCH1-226ENST00000553011 DIS3LQ8TF46 1054 aaKnown RBP16.25■□□□□ 0.19
PTCH1-226ENST00000553011 VTA1Q9NP79 307 aa16.25■□□□□ 0.19
PTCH1-226ENST00000553011 PXMP2Q9NR77 195 aa16.25■□□□□ 0.19
PTCH1-226ENST00000553011 BARHL2Q9NY43 387 aa16.25■□□□□ 0.19
PTCH1-226ENST00000553011 ALPK3Q96L96 1907 aa16.25■□□□□ 0.19
PTCH1-226ENST00000553011 B4DLN1 442 aa16.24■□□□□ 0.19
PTCH1-226ENST00000553011 hCG_1984214I3L0E3 225 aa16.24■□□□□ 0.19
PTCH1-226ENST00000553011 NR3C2P08235 984 aa16.24■□□□□ 0.19
PTCH1-226ENST00000553011 RARBP10826 455 aa16.24■□□□□ 0.19
PTCH1-226ENST00000553011 ADCYAP1R1P41586 468 aa16.24■□□□□ 0.19
PTCH1-226ENST00000553011 MNX1P50219 401 aaPredicted RBP16.24■□□□□ 0.19
PTCH1-226ENST00000553011 MRPL12P52815 198 aaKnown RBP16.24■□□□□ 0.19
PTCH1-226ENST00000553011 SSRP1Q08945 709 aaKnown RBP16.24■□□□□ 0.19
PTCH1-226ENST00000553011 RABEP1Q15276 862 aa16.24■□□□□ 0.19
PTCH1-226ENST00000553011 PPP1R18Q6NYC8 613 aa16.24■□□□□ 0.19
PTCH1-226ENST00000553011 CPLX2Q6PUV4 134 aaKnown RBP16.24■□□□□ 0.19
PTCH1-226ENST00000553011 ZNF713Q8N859 430 aaPredicted RBP16.24■□□□□ 0.19
PTCH1-226ENST00000553011 IL31RAQ8NI17 732 aa16.24■□□□□ 0.19
PTCH1-226ENST00000553011 CUL5Q93034 780 aa16.24■□□□□ 0.19
PTCH1-226ENST00000553011 MPHOSPH6Q99547 160 aaKnown RBP16.24■□□□□ 0.19
PTCH1-226ENST00000553011 PDCD2LQ9BRP1 358 aa16.24■□□□□ 0.19
PTCH1-226ENST00000553011 RBM27Q9P2N5 1060 aaKnown RBP16.24■□□□□ 0.19
PTCH1-226ENST00000553011 DOCK5Q9H7D0 1870 aa16.23■□□□□ 0.19
PTCH1-226ENST00000553011 PIK3CDO00329 1044 aa16.23■□□□□ 0.19
PTCH1-226ENST00000553011 CTDNEP1O95476 244 aa16.23■□□□□ 0.19
PTCH1-226ENST00000553011 PGK1P00558 417 aa16.23■□□□□ 0.19
PTCH1-226ENST00000553011 PTGS1P23219 599 aa16.23■□□□□ 0.19
PTCH1-226ENST00000553011 TMEM63BQ5T3F8 832 aa16.23■□□□□ 0.19
PTCH1-226ENST00000553011 UBE2Q1Q7Z7E8 422 aa16.23■□□□□ 0.19
PTCH1-226ENST00000553011 TRIM22Q8IYM9 498 aa16.23■□□□□ 0.19
PTCH1-226ENST00000553011 GTF3C6Q969F1 213 aa16.23■□□□□ 0.19
PTCH1-226ENST00000553011 IWS1Q96ST2 819 aa16.23■□□□□ 0.19
PTCH1-226ENST00000553011 XPNPEP3Q9NQH7 507 aa16.23■□□□□ 0.19
PTCH1-226ENST00000553011 SMCO2A6NFE2 343 aa16.22■□□□□ 0.19
PTCH1-226ENST00000553011 MYCNP04198 464 aaPredicted RBP16.22■□□□□ 0.19
PTCH1-226ENST00000553011 MYCLP12524 364 aaPredicted RBP16.22■□□□□ 0.19
PTCH1-226ENST00000553011 SMPD1P17405 629 aa16.22■□□□□ 0.19
PTCH1-226ENST00000553011 CAPN2P17655 700 aa16.22■□□□□ 0.19
PTCH1-226ENST00000553011 ADCY7P51828 1080 aa16.22■□□□□ 0.19
PTCH1-226ENST00000553011 IRX5P78411 483 aaPredicted RBP16.22■□□□□ 0.19
PTCH1-226ENST00000553011 TNFAIP2Q03169 654 aa16.22■□□□□ 0.19
PTCH1-226ENST00000553011 ST3GAL1Q11201 340 aa16.22■□□□□ 0.19
PTCH1-226ENST00000553011 PGM5Q15124 567 aa16.22■□□□□ 0.19
PTCH1-226ENST00000553011 STXBP2Q15833 593 aa16.22■□□□□ 0.19
PTCH1-226ENST00000553011 GJC2Q5T442 439 aaPredicted RBP16.22■□□□□ 0.19
PTCH1-226ENST00000553011 ANKLE1Q8NAG6 615 aa16.22■□□□□ 0.19
PTCH1-226ENST00000553011 PAWRQ96IZ0 340 aaKnown RBP16.22■□□□□ 0.19
PTCH1-226ENST00000553011 ZFP91Q96JP5 570 aaPredicted RBP16.22■□□□□ 0.19
PTCH1-226ENST00000553011 RIC8AQ9NPQ8 531 aa16.22■□□□□ 0.19
PTCH1-226ENST00000553011 VPS54Q9P1Q0 977 aa16.22■□□□□ 0.19
PTCH1-226ENST00000553011 LIMCH1Q9UPQ0 1083 aa16.22■□□□□ 0.19
PTCH1-226ENST00000553011 FRMPD4Q14CM0 1322 aa16.21■□□□□ 0.19
PTCH1-226ENST00000553011 SYNRGQ9UMZ2 1314 aa16.21■□□□□ 0.19
PTCH1-226ENST00000553011 MKI67P46013 3256 aaKnown RBP16.21■□□□□ 0.19
PTCH1-226ENST00000553011 RBM47A0AV96 593 aaKnown RBP16.21■□□□□ 0.19
PTCH1-226ENST00000553011 ADAMTS3O15072 1205 aa16.21■□□□□ 0.19
PTCH1-226ENST00000553011 DUSP11O75319 330 aaKnown RBP16.21■□□□□ 0.19
PTCH1-226ENST00000553011 DEXIO95424 95 aa16.21■□□□□ 0.19
PTCH1-226ENST00000553011 LRRC41Q15345 812 aa16.21■□□□□ 0.19
PTCH1-226ENST00000553011 VSIG10LQ86VR7 867 aa16.21■□□□□ 0.19
PTCH1-226ENST00000553011 AIFM3Q96NN9 605 aa16.21■□□□□ 0.19
PTCH1-226ENST00000553011 WDR11Q9BZH6 1224 aa16.21■□□□□ 0.19
PTCH1-226ENST00000553011 TNRC18O15417 2968 aaPredicted RBP16.21■□□□□ 0.19
PTCH1-226ENST00000553011 ESYT2A0FGR8 921 aa16.2■□□□□ 0.18
PTCH1-226ENST00000553011 MYADML2A6NDP7 307 aa16.2■□□□□ 0.18
PTCH1-226ENST00000553011 ADAMTS4O75173 837 aa16.2■□□□□ 0.18
PTCH1-226ENST00000553011 CDKL5O76039 1030 aa16.2■□□□□ 0.18
PTCH1-226ENST00000553011 ARIH2O95376 493 aa16.2■□□□□ 0.18
PTCH1-226ENST00000553011 CCND2P30279 289 aa16.2■□□□□ 0.18
PTCH1-226ENST00000553011 IQSEC1Q6DN90 963 aa16.2■□□□□ 0.18
PTCH1-226ENST00000553011 SEPT14Q6ZU15 432 aa16.2■□□□□ 0.18
PTCH1-226ENST00000553011 ARRDC4Q8NCT1 418 aa16.2■□□□□ 0.18
PTCH1-226ENST00000553011 PGBD1Q96JS3 809 aa16.2■□□□□ 0.18
PTCH1-226ENST00000553011 TMEM260Q9NX78 707 aa16.2■□□□□ 0.18
PTCH1-226ENST00000553011 PCDHA6Q9UN73 950 aa16.2■□□□□ 0.18
PTCH1-226ENST00000553011 GNEQ9Y223 722 aaKnown RBP16.2■□□□□ 0.18
PTCH1-226ENST00000553011 PCDHA8Q9Y5H6 950 aa16.2■□□□□ 0.18
PTCH1-226ENST00000553011 STK36Q9NRP7 1315 aa16.19■□□□□ 0.18
PTCH1-226ENST00000553011 SPDYE3A6NKU9 549 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms