RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 GPRC5AQ8NFJ5 357 aa8.65□□□□□ -1.02
LIMA1-216ENST00000552909 ATG4CQ96DT6 458 aa8.65□□□□□ -1.02
LIMA1-216ENST00000552909 LRRC2Q9BYS8 371 aa8.65□□□□□ -1.02
LIMA1-216ENST00000552909 NAT10Q9H0A0 1025 aaKnown RBP8.65□□□□□ -1.02
LIMA1-216ENST00000552909 GOPCQ9HD26 462 aa8.65□□□□□ -1.02
LIMA1-216ENST00000552909 MTMR7Q9Y216 660 aa8.65□□□□□ -1.02
LIMA1-216ENST00000552909 LAMA4Q16363 1823 aa8.65□□□□□ -1.02
LIMA1-216ENST00000552909 EIF3CLB5ME19 914 aaKnown RBP8.65□□□□□ -1.03
LIMA1-216ENST00000552909 WDR46O15213 610 aaKnown RBP8.65□□□□□ -1.03
LIMA1-216ENST00000552909 RPS6KA5O75582 802 aa8.65□□□□□ -1.03
LIMA1-216ENST00000552909 DSG3P32926 999 aa8.65□□□□□ -1.03
LIMA1-216ENST00000552909 NOVP48745 357 aa8.65□□□□□ -1.03
LIMA1-216ENST00000552909 FCGRTP55899 365 aa8.65□□□□□ -1.03
LIMA1-216ENST00000552909 RCSD1Q6JBY9 416 aa8.65□□□□□ -1.03
LIMA1-216ENST00000552909 ARMCX5Q6P1M9 558 aa8.65□□□□□ -1.03
LIMA1-216ENST00000552909 LBX2Q6XYB7 198 aa8.65□□□□□ -1.03
LIMA1-216ENST00000552909 CCDC91Q7Z6B0 441 aa8.65□□□□□ -1.03
LIMA1-216ENST00000552909 NBPF11Q86T75 865 aa8.65□□□□□ -1.03
LIMA1-216ENST00000552909 EIF3CQ99613 913 aaKnown RBP8.65□□□□□ -1.03
LIMA1-216ENST00000552909 FUT8Q9BYC5 575 aa8.65□□□□□ -1.03
LIMA1-216ENST00000552909 HOXC10Q9NYD6 342 aa8.65□□□□□ -1.03
LIMA1-216ENST00000552909 ZSWIM5Q9P217 1185 aa8.65□□□□□ -1.03
LIMA1-216ENST00000552909 SRRDQ9UH36 339 aa8.65□□□□□ -1.03
LIMA1-216ENST00000552909 PARP14Q460N5 1801 aa8.65□□□□□ -1.03
LIMA1-216ENST00000552909 TNPO2O14787 897 aaKnown RBP8.64□□□□□ -1.03
LIMA1-216ENST00000552909 MYCP01106 439 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-216ENST00000552909 FLT3LGP49771 235 aa8.64□□□□□ -1.03
LIMA1-216ENST00000552909 EXOSC10Q01780 885 aaKnown RBP8.64□□□□□ -1.03
LIMA1-216ENST00000552909 TRDNQ13061 729 aa8.64□□□□□ -1.03
LIMA1-216ENST00000552909 GNL2Q13823 731 aaKnown RBP8.64□□□□□ -1.03
LIMA1-216ENST00000552909 SLFN13Q68D06 897 aa8.64□□□□□ -1.03
LIMA1-216ENST00000552909 Q6ZUG5 572 aa8.64□□□□□ -1.03
LIMA1-216ENST00000552909 TMC6Q7Z403 805 aa8.64□□□□□ -1.03
LIMA1-216ENST00000552909 SUGP1Q8IWZ8 645 aaKnown RBP8.64□□□□□ -1.03
LIMA1-216ENST00000552909 AOPEPQ8N6M6 819 aa8.64□□□□□ -1.03
LIMA1-216ENST00000552909 NCOA7Q8NI08 942 aa8.64□□□□□ -1.03
LIMA1-216ENST00000552909 SH3TC2Q8TF17 1288 aa8.64□□□□□ -1.03
LIMA1-216ENST00000552909 TPCN1Q9ULQ1 816 aa8.64□□□□□ -1.03
LIMA1-216ENST00000552909 RABGAP1Q9Y3P9 1069 aa8.64□□□□□ -1.03
LIMA1-216ENST00000552909 COL11A1P12107 1806 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-216ENST00000552909 MYPNQ86TC9 1320 aa8.64□□□□□ -1.03
LIMA1-216ENST00000552909 H3BQF6 201 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 MYCNP04198 464 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-216ENST00000552909 CCDC172P0C7W6 258 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 TOB2Q14106 344 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-216ENST00000552909 TMEM132BQ14DG7 1078 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 ARHGEF6Q15052 776 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 ANKRD1Q15327 319 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 JAKMIP3Q5VZ66 844 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 RALYLQ86SE5 291 aaKnown RBP8.63□□□□□ -1.03
LIMA1-216ENST00000552909 GMCL1P1Q8NEA9 526 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 ESR2Q92731 530 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 TMEM47Q9BQJ4 181 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 ALDH8A1Q9H2A2 487 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-216ENST00000552909 RNF41Q9H4P4 317 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-216ENST00000552909 TCP11L1Q9NUJ3 509 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 GJD2Q9UKL4 321 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 GNRH1P01148 92 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 PCP11498 1178 aaKnown RBP8.63□□□□□ -1.03
LIMA1-216ENST00000552909 SART3Q15020 963 aaKnown RBP8.63□□□□□ -1.03
LIMA1-216ENST00000552909 TRIM65Q6PJ69 517 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 KCTD1Q719H9 257 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 CYB5R4Q7L1T6 521 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 BANK1Q8NDB2 785 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 EPC1Q9H2F5 836 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 VPS18Q9P253 973 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 CFAP45Q9UL16 551 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 PPP1R9AQ9ULJ8 1098 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 ADAMTS5Q9UNA0 930 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 CEP83Q9Y592 693 aa8.63□□□□□ -1.03
LIMA1-216ENST00000552909 PLXNB2O15031 1838 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 VWA5AO00534 786 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 PRC1O43663 620 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 KINO60870 393 aaKnown RBP8.62□□□□□ -1.03
LIMA1-216ENST00000552909 BMP3P12645 472 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 ELNP15502 786 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 CORO7P57737 925 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 PLS1Q14651 629 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 LONRF2Q1L5Z9 754 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 SLC9C1Q4G0N8 1177 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 CT47A1Q5JQC4 288 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-216ENST00000552909 SWT1Q5T5J6 900 aaKnown RBP8.62□□□□□ -1.03
LIMA1-216ENST00000552909 MCTP2Q6DN12 878 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 CCDC73Q6ZRK6 1079 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 GPR142Q7Z601 462 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 REPS2Q8NFH8 660 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 RAET1EQ8TD07 263 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 RABGGTAQ92696 567 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 BRF1Q92994 677 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 COA7Q96BR5 231 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 MOV10L1Q9BXT6 1211 aaKnown RBP8.62□□□□□ -1.03
LIMA1-216ENST00000552909 PARD6BQ9BYG5 372 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 XPO4Q9C0E2 1151 aaKnown RBP8.62□□□□□ -1.03
LIMA1-216ENST00000552909 SPATC1LQ9H0A9 340 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 SMCHD1A6NHR9 2005 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 CCDC151A5D8V7 595 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 TMEM232C9JQI7 657 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 HOXD10P28358 340 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 SLC1A4P43007 532 aa8.62□□□□□ -1.03
LIMA1-216ENST00000552909 SOX10P56693 466 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms