RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 CCNE1P24864 410 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 PRDX5P30044 214 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 UBA7P41226 1012 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 MATR3P43243 847 aaKnown RBP eCLIP6.04□□□□□ -1.44
LIMA1-212ENST00000552491 IRAK1P51617 712 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 VAV2P52735 878 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 CKAP4Q07065 602 aaKnown RBP6.04□□□□□ -1.44
LIMA1-212ENST00000552491 CCDC178Q5BJE1 867 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 NFRKBQ6P4R8 1299 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 ZSCAN29Q8IWY8 852 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-212ENST00000552491 KIAA0895Q8NCT3 520 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 SPATA4Q8NEY3 305 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 RASSF8Q8NHQ8 419 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 CERKQ8TCT0 537 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 SECISBP2LQ93073 1101 aaKnown RBP6.04□□□□□ -1.44
LIMA1-212ENST00000552491 ARL8AQ96BM9 186 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 CRACR2AQ9BSW2 395 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 TRIM9Q9C026 710 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 CCSER1Q9C0I3 900 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 SEMA6BQ9H3T3 888 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 POLD4Q9HCU8 107 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 MTMR7Q9Y216 660 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 RREB1Q92766 1687 aa6.04□□□□□ -1.44
LIMA1-212ENST00000552491 USP17L3A6NCW0 530 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 USP17L4A6NCW7 530 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 GOLGA6CA6NDK9 693 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 TSPY2A6NKD2 308 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 NUTM2BA6NNL0 878 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-212ENST00000552491 NUTM2EB1AL46 878 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-212ENST00000552491 SLC34A2O95436 690 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 GOLGA6DP0CG33 693 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 CRKLP46109 303 aaKnown RBP6.03□□□□□ -1.44
LIMA1-212ENST00000552491 MTIF2P46199 727 aaKnown RBP6.03□□□□□ -1.44
LIMA1-212ENST00000552491 CCT5P48643 541 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 PTPN5P54829 565 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 ATP2B2Q01814 1243 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 PDE4DQ08499 809 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 KIF5AQ12840 1032 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 SEMA3FQ13275 785 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 ITPK1Q13572 414 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 TXNRD1Q16881 649 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 TTC31Q49AM3 519 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-212ENST00000552491 TTMPQ5BVD1 217 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 USP17L1Q7RTZ2 530 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 SLC51AQ86UW1 340 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 CCDC170Q8IYT3 715 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 MMGT1Q8N4V1 131 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 ANKRD13CQ8N6S4 541 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 KAT2BQ92831 832 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 DYNLL2Q96FJ2 89 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 DHTKD1Q96HY7 919 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-212ENST00000552491 PCMTD1Q96MG8 357 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-212ENST00000552491 ERGIC2Q96RQ1 377 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 NOC4LQ9BVI4 516 aaKnown RBP6.03□□□□□ -1.44
LIMA1-212ENST00000552491 SH2D4AQ9H788 454 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 GOLGA6AQ9NYA3 693 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 MAGEC2Q9UBF1 373 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-212ENST00000552491 MAD2L2Q9UI95 211 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 FAM184BQ9ULE4 1060 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 MINPP1Q9UNW1 487 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 SIK3Q9Y2K2 1263 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 PCDHA13Q9Y5I0 950 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 LTBP4Q8N2S1 1624 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 CCDC194A0A1B0GVG4 234 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 STXBP3O00186 592 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 MYL1P05976 194 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 CALML3P27482 149 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 CCDC96Q2M329 555 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 DNAJC21Q5F1R6 531 aaKnown RBP6.03□□□□□ -1.44
LIMA1-212ENST00000552491 HAUS3Q68CZ6 603 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 ZNF572Q7Z3I7 529 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-212ENST00000552491 C2CD5Q86YS7 1000 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 FAM76AQ8TAV0 307 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 CELF1Q92879 486 aaKnown RBP6.03□□□□□ -1.44
LIMA1-212ENST00000552491 MS4A14Q96JA4 679 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 CCDC42Q96M95 316 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 OSBPL9Q96SU4 736 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 SH3GL2Q99962 352 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 MMTAG2Q9BU76 263 aaKnown RBP6.03□□□□□ -1.44
LIMA1-212ENST00000552491 NUP58Q9BVL2 599 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 IFIH1Q9BYX4 1025 aaKnown RBP6.03□□□□□ -1.44
LIMA1-212ENST00000552491 FAM207AQ9NSI2 230 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-212ENST00000552491 CCDC87Q9NVE4 849 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 PLAGL2Q9UPG8 496 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 CASZ1Q86V15 1759 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 ZNF335Q9H4Z2 1342 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-212ENST00000552491 LAMB2P55268 1798 aa6.03□□□□□ -1.44
LIMA1-212ENST00000552491 ZSCAN5CA6NGD5 496 aaPredicted RBP6.02□□□□□ -1.44
LIMA1-212ENST00000552491 TK2O00142 265 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 ADAMTS2O95450 1211 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 GOLGA8HP0CJ92 632 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 HNRNPH3P31942 346 aaKnown RBP6.02□□□□□ -1.44
LIMA1-212ENST00000552491 EIF4A3P38919 411 aaKnown RBP6.02□□□□□ -1.44
LIMA1-212ENST00000552491 KIF11P52732 1056 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 ASIC1P78348 528 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 CDK17Q00537 523 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 TFAP4Q01664 338 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 UBE4AQ14139 1066 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 ERFEQ4G0M1 354 aa6.02□□□□□ -1.44
LIMA1-212ENST00000552491 ICE2Q659A1 982 aa6.02□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms