RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 TMEM39AQ9NV64 488 aa9.04□□□□□ -0.96
NEK3-201ENST00000550331 THEGQ9P2T0 379 aa9.04□□□□□ -0.96
NEK3-201ENST00000550331 PCDHB15Q9Y5E8 787 aa9.04□□□□□ -0.96
NEK3-201ENST00000550331 ELP1O95163 1332 aa9.04□□□□□ -0.96
NEK3-201ENST00000550331 SALL3Q9BXA9 1300 aa9.04□□□□□ -0.96
NEK3-201ENST00000550331 GBF1Q92538 1859 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 TSPY2A6NKD2 308 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 TMEM232C9JQI7 657 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 SNRPBP14678 240 aaKnown RBP9.03□□□□□ -0.96
NEK3-201ENST00000550331 SLC1A4P43007 532 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 GJA9P57773 515 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 NKX3-2P78367 333 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 FAAP100Q0VG06 881 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 KCNA10Q16322 511 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 TKFCQ3LXA3 575 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 CCDC144BQ3MJ40 725 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 PLA2G2CQ5R387 149 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 ARMCX2Q7L311 632 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 FAM133AQ8N9E0 248 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 IL27Q8NEV9 243 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 TIFAQ96CG3 184 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 ASB2Q96Q27 587 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 UHRF1Q96T88 793 aaPredicted RBP9.03□□□□□ -0.96
NEK3-201ENST00000550331 UPF3AQ9H1J1 476 aaKnown RBP9.03□□□□□ -0.96
NEK3-201ENST00000550331 SENP2Q9HC62 589 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 ANAPC4Q9UJX5 808 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 TBX21Q9UL17 535 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.03□□□□□ -0.96
NEK3-201ENST00000550331 ZNF536O15090 1300 aa9.03□□□□□ -0.96
NEK3-201ENST00000550331 MYADML2A6NDP7 307 aa9.02□□□□□ -0.97
NEK3-201ENST00000550331 ASB14A6NK59 587 aa9.02□□□□□ -0.97
NEK3-201ENST00000550331 FOXP2O15409 715 aa9.02□□□□□ -0.97
NEK3-201ENST00000550331 ADCY6O43306 1168 aa9.02□□□□□ -0.97
NEK3-201ENST00000550331 C6orf222P0C671 652 aaPredicted RBP9.02□□□□□ -0.97
NEK3-201ENST00000550331 NOVP48745 357 aa9.02□□□□□ -0.97
NEK3-201ENST00000550331 CDK7P50613 346 aa9.02□□□□□ -0.97
NEK3-201ENST00000550331 MRPS5P82675 430 aaKnown RBP9.02□□□□□ -0.97
NEK3-201ENST00000550331 IKQ13123 557 aaPredicted RBP9.02□□□□□ -0.97
NEK3-201ENST00000550331 TICAM2Q86XR7 235 aa9.02□□□□□ -0.97
NEK3-201ENST00000550331 CCDC144CPQ8IYA2 1237 aa9.02□□□□□ -0.97
NEK3-201ENST00000550331 CYP4X1Q8N118 509 aa9.02□□□□□ -0.97
NEK3-201ENST00000550331 EVI5LQ96CN4 794 aa9.02□□□□□ -0.97
NEK3-201ENST00000550331 KATNBL1Q9H079 304 aa9.02□□□□□ -0.97
NEK3-201ENST00000550331 PRDM12Q9H4Q4 367 aa9.02□□□□□ -0.97
NEK3-201ENST00000550331 A1CFQ9NQ94 594 aaKnown RBP9.02□□□□□ -0.97
NEK3-201ENST00000550331 HOMER2Q9NSB8 354 aa9.02□□□□□ -0.97
NEK3-201ENST00000550331 RNF146Q9NTX7 359 aa9.02□□□□□ -0.97
NEK3-201ENST00000550331 ISY1Q9ULR0 285 aaKnown RBP9.02□□□□□ -0.97
NEK3-201ENST00000550331 STX8Q9UNK0 236 aa9.02□□□□□ -0.97
NEK3-201ENST00000550331 COL11A1P12107 1806 aaPredicted RBP9.02□□□□□ -0.97
NEK3-201ENST00000550331 ORC4O43929 436 aa9.01□□□□□ -0.97
NEK3-201ENST00000550331 TIMP1P01033 207 aa9.01□□□□□ -0.97
NEK3-201ENST00000550331 ASGR1P07306 291 aa9.01□□□□□ -0.97
NEK3-201ENST00000550331 FGRP09769 529 aa9.01□□□□□ -0.97
NEK3-201ENST00000550331 MCCP23508 829 aa9.01□□□□□ -0.97
NEK3-201ENST00000550331 CCDC85BQ15834 202 aaPredicted RBP9.01□□□□□ -0.97
NEK3-201ENST00000550331 AKNAD1Q5T1N1 836 aa9.01□□□□□ -0.97
NEK3-201ENST00000550331 RCSD1Q6JBY9 416 aa9.01□□□□□ -0.97
NEK3-201ENST00000550331 CCDC174Q6PII3 467 aa9.01□□□□□ -0.97
NEK3-201ENST00000550331 CCDC129Q6ZRS4 1044 aa9.01□□□□□ -0.97
NEK3-201ENST00000550331 FAM126BQ8IXS8 530 aa9.01□□□□□ -0.97
NEK3-201ENST00000550331 AGBL1Q96MI9 1066 aa9.01□□□□□ -0.97
NEK3-201ENST00000550331 TRERF1Q96PN7 1200 aa9.01□□□□□ -0.97
NEK3-201ENST00000550331 ATP13A2Q9NQ11 1180 aa9.01□□□□□ -0.97
NEK3-201ENST00000550331 IL17RBQ9NRM6 502 aa9.01□□□□□ -0.97
NEK3-201ENST00000550331 HELLSQ9NRZ9 838 aa9.01□□□□□ -0.97
NEK3-201ENST00000550331 A0A0U1RQG5 324 aaPredicted RBP9□□□□□ -0.97
NEK3-201ENST00000550331 ARVCFO00192 962 aa9□□□□□ -0.97
NEK3-201ENST00000550331 CTAGE5O15320 804 aa9□□□□□ -0.97
NEK3-201ENST00000550331 TLR3O15455 904 aaKnown RBP9□□□□□ -0.97
NEK3-201ENST00000550331 RANBP6O60518 1105 aaKnown RBP9□□□□□ -0.97
NEK3-201ENST00000550331 NMT2O60551 498 aa9□□□□□ -0.97
NEK3-201ENST00000550331 CABYRO75952 493 aa9□□□□□ -0.97
NEK3-201ENST00000550331 ADH1BP00325 375 aa9□□□□□ -0.97
NEK3-201ENST00000550331 ICAM1P05362 532 aa9□□□□□ -0.97
NEK3-201ENST00000550331 ALAS1P13196 640 aa9□□□□□ -0.97
NEK3-201ENST00000550331 IGFBP4P22692 258 aa9□□□□□ -0.97
NEK3-201ENST00000550331 RRP1P56182 461 aaKnown RBP9□□□□□ -0.97
NEK3-201ENST00000550331 CNTN2Q02246 1040 aa9□□□□□ -0.97
NEK3-201ENST00000550331 TNFAIP2Q03169 654 aa9□□□□□ -0.97
NEK3-201ENST00000550331 CTDSPL2Q05D32 466 aa9□□□□□ -0.97
NEK3-201ENST00000550331 ALX1Q15699 326 aa9□□□□□ -0.97
NEK3-201ENST00000550331 GNASQ5JWF2 1037 aa9□□□□□ -0.97
NEK3-201ENST00000550331 VPS53Q5VIR6 699 aa9□□□□□ -0.97
NEK3-201ENST00000550331 MFSD5Q6N075 450 aa9□□□□□ -0.97
NEK3-201ENST00000550331 KCTD1Q719H9 257 aa9□□□□□ -0.97
NEK3-201ENST00000550331 DCAF4Q8WV16 495 aa9□□□□□ -0.97
NEK3-201ENST00000550331 BUD13Q9BRD0 619 aaKnown RBP eCLIP9□□□□□ -0.97
NEK3-201ENST00000550331 SEZ6LQ9BYH1 1024 aa9□□□□□ -0.97
NEK3-201ENST00000550331 CYP39A1Q9NYL5 469 aa9□□□□□ -0.97
NEK3-201ENST00000550331 PRR12Q9ULL5 1215 aa9□□□□□ -0.97
NEK3-201ENST00000550331 GNEQ9Y223 722 aaKnown RBP9□□□□□ -0.97
NEK3-201ENST00000550331 Q9Y3F1 56 aa9□□□□□ -0.97
NEK3-201ENST00000550331 ASTN1O14525 1302 aa9□□□□□ -0.97
NEK3-201ENST00000550331 ZMYM6O95789 1325 aa9□□□□□ -0.97
NEK3-201ENST00000550331 LOC102724159A0A0B4J2E5 919 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.99□□□□□ -0.97
NEK3-201ENST00000550331 GRXCR1A8MXD5 290 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 CD4P01730 458 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 TOP1P11387 765 aaKnown RBP8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms