RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 MTERF2Q49AM1 385 aa6.08□□□□□ -1.44
VPS29-205ENST00000548539 NBPF12Q5TAG4 269 aaPredicted RBP6.08□□□□□ -1.44
VPS29-205ENST00000548539 CPZQ66K79 652 aa6.08□□□□□ -1.44
VPS29-205ENST00000548539 SPATC1Q76KD6 591 aa6.08□□□□□ -1.44
VPS29-205ENST00000548539 PPFIBP1Q86W92 1011 aa6.08□□□□□ -1.44
VPS29-205ENST00000548539 LILRB2Q8N423 598 aa6.08□□□□□ -1.44
VPS29-205ENST00000548539 KLHL6Q8WZ60 621 aa6.08□□□□□ -1.44
VPS29-205ENST00000548539 KANSL2Q9H9L4 492 aa6.08□□□□□ -1.44
VPS29-205ENST00000548539 FAN1Q9Y2M0 1017 aa6.08□□□□□ -1.44
VPS29-205ENST00000548539 DUSP10Q9Y6W6 482 aa6.08□□□□□ -1.44
VPS29-205ENST00000548539 HMGA2P52926 109 aa6.07□□□□□ -1.44
VPS29-205ENST00000548539 ZNF662Q6ZS27 426 aa6.07□□□□□ -1.44
VPS29-205ENST00000548539 LRP10Q7Z4F1 713 aa6.07□□□□□ -1.44
VPS29-205ENST00000548539 SAPCD2Q86UD0 394 aa6.07□□□□□ -1.44
VPS29-205ENST00000548539 ZNF526Q8TF50 670 aaPredicted RBP6.07□□□□□ -1.44
VPS29-205ENST00000548539 RNPC3Q96LT9 517 aaKnown RBP6.07□□□□□ -1.44
VPS29-205ENST00000548539 PRDM14Q9GZV8 571 aa6.07□□□□□ -1.44
VPS29-205ENST00000548539 CHST7Q9NS84 486 aa6.07□□□□□ -1.44
VPS29-205ENST00000548539 ZNF214Q9UL59 606 aaPredicted RBP6.07□□□□□ -1.44
VPS29-205ENST00000548539 MINPP1Q9UNW1 487 aa6.07□□□□□ -1.44
VPS29-205ENST00000548539 SH3D21A4FU49 640 aa6.06□□□□□ -1.44
VPS29-205ENST00000548539 C9IYK1 514 aa6.06□□□□□ -1.44
VPS29-205ENST00000548539 NOBOXO60393 691 aa6.06□□□□□ -1.44
VPS29-205ENST00000548539 DIAPH1O60610 1272 aaKnown RBP6.06□□□□□ -1.44
VPS29-205ENST00000548539 CLEC3AO75596 197 aa6.06□□□□□ -1.44
VPS29-205ENST00000548539 GJA9P57773 515 aa6.06□□□□□ -1.44
VPS29-205ENST00000548539 NCAPHQ15003 741 aa6.06□□□□□ -1.44
VPS29-205ENST00000548539 TCEAL1Q15170 157 aa6.06□□□□□ -1.44
VPS29-205ENST00000548539 EEPD1Q7L9B9 569 aa6.06□□□□□ -1.44
VPS29-205ENST00000548539 SH3TC2Q8TF17 1288 aa6.06□□□□□ -1.44
VPS29-205ENST00000548539 JMJD8Q96S16 334 aa6.06□□□□□ -1.44
VPS29-205ENST00000548539 SUCOQ9UBS9 1254 aaKnown RBP6.06□□□□□ -1.44
VPS29-205ENST00000548539 KDM2BQ8NHM5 1336 aa6.05□□□□□ -1.44
VPS29-205ENST00000548539 A0A1W2PQJ5 194 aa6.05□□□□□ -1.44
VPS29-205ENST00000548539 C1QTNF3-AMACRE9PGA6 284 aa6.05□□□□□ -1.44
VPS29-205ENST00000548539 MEIS1O00470 390 aa6.05□□□□□ -1.44
VPS29-205ENST00000548539 SUSD5O60279 629 aa6.05□□□□□ -1.44
VPS29-205ENST00000548539 CCNFP41002 786 aa6.05□□□□□ -1.44
VPS29-205ENST00000548539 PMS1P54277 932 aaKnown RBP6.05□□□□□ -1.44
VPS29-205ENST00000548539 SSRP1Q08945 709 aaKnown RBP6.05□□□□□ -1.44
VPS29-205ENST00000548539 DHRS1Q96LJ7 313 aa6.05□□□□□ -1.44
VPS29-205ENST00000548539 MKRN2Q9H000 416 aaKnown RBP6.05□□□□□ -1.44
VPS29-205ENST00000548539 ESYT3A0FGR9 886 aa6.04□□□□□ -1.44
VPS29-205ENST00000548539 ZNF205O95201 554 aa6.04□□□□□ -1.44
VPS29-205ENST00000548539 CYBBP04839 570 aa6.04□□□□□ -1.44
VPS29-205ENST00000548539 ATF2P15336 505 aa6.04□□□□□ -1.44
VPS29-205ENST00000548539 BMP8BP34820 402 aa6.04□□□□□ -1.44
VPS29-205ENST00000548539 HTRA3P83110 453 aa6.04□□□□□ -1.44
VPS29-205ENST00000548539 MVKQ03426 396 aa6.04□□□□□ -1.44
VPS29-205ENST00000548539 AXDND1Q5T1B0 1012 aaPredicted RBP6.04□□□□□ -1.44
VPS29-205ENST00000548539 DCAF15Q66K64 600 aa6.04□□□□□ -1.44
VPS29-205ENST00000548539 PAQR3Q6TCH7 311 aa6.04□□□□□ -1.44
VPS29-205ENST00000548539 CCDC144CPQ8IYA2 1237 aa6.04□□□□□ -1.44
VPS29-205ENST00000548539 CARFQ8N187 725 aa6.04□□□□□ -1.44
VPS29-205ENST00000548539 LOXL4Q96JB6 756 aa6.04□□□□□ -1.44
VPS29-205ENST00000548539 RBM15Q96T37 977 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS29-205ENST00000548539 AP5S1Q9NUS5 200 aa6.04□□□□□ -1.44
VPS29-205ENST00000548539 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS29-205ENST00000548539 EPHX1P07099 455 aa6.03□□□□□ -1.44
VPS29-205ENST00000548539 ZNF20P17024 532 aa6.03□□□□□ -1.44
VPS29-205ENST00000548539 FBLN1P23142 703 aa6.03□□□□□ -1.44
VPS29-205ENST00000548539 CANXP27824 592 aaKnown RBP6.03□□□□□ -1.44
VPS29-205ENST00000548539 GDF5P43026 501 aa6.03□□□□□ -1.44
VPS29-205ENST00000548539 CEBPAP49715 358 aaPredicted RBP6.03□□□□□ -1.44
VPS29-205ENST00000548539 SLC10A6Q3KNW5 377 aa6.03□□□□□ -1.44
VPS29-205ENST00000548539 SV2CQ496J9 727 aa6.03□□□□□ -1.44
VPS29-205ENST00000548539 EGFLAMQ63HQ2 1017 aa6.03□□□□□ -1.44
VPS29-205ENST00000548539 ST13P5Q8NFI4 369 aaPredicted RBP6.03□□□□□ -1.44
VPS29-205ENST00000548539 PPP1R14AQ96A00 147 aa6.03□□□□□ -1.44
VPS29-205ENST00000548539 FGD4Q96M96 766 aa6.03□□□□□ -1.44
VPS29-205ENST00000548539 C8orf49Q96NF6 230 aa6.03□□□□□ -1.44
VPS29-205ENST00000548539 SAMD11Q96NU1 681 aa6.03□□□□□ -1.44
VPS29-205ENST00000548539 HAUS7Q99871 368 aa6.03□□□□□ -1.44
VPS29-205ENST00000548539 LGR4Q9BXB1 951 aa6.03□□□□□ -1.44
VPS29-205ENST00000548539 C1QTNF3Q9BXJ4 246 aa6.03□□□□□ -1.44
VPS29-205ENST00000548539 RNF38Q9H0F5 515 aa6.03□□□□□ -1.44
VPS29-205ENST00000548539 FANCLQ9NW38 375 aa6.03□□□□□ -1.44
VPS29-205ENST00000548539 ANKRD62A6NC57 917 aa6.02□□□□□ -1.45
VPS29-205ENST00000548539 DBHP09172 617 aa6.02□□□□□ -1.45
VPS29-205ENST00000548539 NCAM1P13591 858 aa6.02□□□□□ -1.45
VPS29-205ENST00000548539 VAV1P15498 845 aa6.02□□□□□ -1.45
VPS29-205ENST00000548539 HEATR6Q6AI08 1181 aaKnown RBP6.02□□□□□ -1.45
VPS29-205ENST00000548539 BICRALQ6AI39 1079 aa6.02□□□□□ -1.45
VPS29-205ENST00000548539 JAMLQ86YT9 394 aa6.02□□□□□ -1.45
VPS29-205ENST00000548539 TTC9BQ8N6N2 239 aa6.02□□□□□ -1.45
VPS29-205ENST00000548539 NAT16Q8N8M0 369 aa6.02□□□□□ -1.45
VPS29-205ENST00000548539 TMEM52Q8NDY8 209 aa6.02□□□□□ -1.45
VPS29-205ENST00000548539 SCAND2PQ9GZW5 306 aaPredicted RBP6.02□□□□□ -1.45
VPS29-205ENST00000548539 HCFC2Q9Y5Z7 792 aa6.02□□□□□ -1.45
VPS29-205ENST00000548539 SRGAP3O43295 1099 aa6.01□□□□□ -1.45
VPS29-205ENST00000548539 CBFA2T2O43439 604 aa6.01□□□□□ -1.45
VPS29-205ENST00000548539 CDC45O75419 566 aa6.01□□□□□ -1.45
VPS29-205ENST00000548539 C6P13671 934 aa6.01□□□□□ -1.45
VPS29-205ENST00000548539 HSD3B2P26439 372 aa6.01□□□□□ -1.45
VPS29-205ENST00000548539 CTSKP43235 329 aa6.01□□□□□ -1.45
VPS29-205ENST00000548539 PRR5P85299 388 aa6.01□□□□□ -1.45
VPS29-205ENST00000548539 DLX2Q07687 328 aaPredicted RBP6.01□□□□□ -1.45
VPS29-205ENST00000548539 SQSTM1Q13501 440 aa6.01□□□□□ -1.45
VPS29-205ENST00000548539 C2orf27AQ580R0 203 aa6.01□□□□□ -1.45
VPS29-205ENST00000548539 HLA-DQA1Q5Y7H0 255 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms