RNA–Protein interactions for RNA: ENST00000548421.2

BRF1-213, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, human

TSL 1 (best) BASIC

Gene BRF1, Length 1,452 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRF1-213	ENST00000548421	USP11	P51784	963 aa		32.75	■■■□□ 2.83
BRF1-213	ENST00000548421	ARHGAP4	P98171	946 aa		32.75	■■■□□ 2.83
BRF1-213	ENST00000548421	WDR78	Q5VTH9	848 aa		32.75	■■■□□ 2.83
BRF1-213	ENST00000548421	C17orf99	Q6UX52	265 aa		32.75	■■■□□ 2.83
BRF1-213	ENST00000548421	CCAR1	Q8IX12	1150 aa	Known RBP	32.75	■■■□□ 2.83
BRF1-213	ENST00000548421	LEO1	Q8WVC0	666 aa	Predicted RBP	32.75	■■■□□ 2.83
BRF1-213	ENST00000548421	CRYGN	Q8WXF5	182 aa		32.75	■■■□□ 2.83
BRF1-213	ENST00000548421	R3HDML	Q9H3Y0	253 aa		32.75	■■■□□ 2.83
BRF1-213	ENST00000548421	EFCC1	Q9HA90	598 aa		32.75	■■■□□ 2.83
BRF1-213	ENST00000548421	ZNFX1	Q9P2E3	1918 aa	Known RBP	32.75	■■■□□ 2.83
BRF1-213	ENST00000548421	STK38	Q15208	465 aa		32.74	■■■□□ 2.83
BRF1-213	ENST00000548421	LINC00301	Q8NCQ3	95 aa		32.74	■■■□□ 2.83
BRF1-213	ENST00000548421	RCOR1	Q9UKL0	485 aa		32.74	■■■□□ 2.83
BRF1-213	ENST00000548421	FRMPD4	Q14CM0	1322 aa		32.74	■■■□□ 2.83
BRF1-213	ENST00000548421	RPTOR	Q8N122	1335 aa		32.74	■■■□□ 2.83
BRF1-213	ENST00000548421	CCNT1	O60563	726 aa	Known RBP	32.74	■■■□□ 2.83
BRF1-213	ENST00000548421	BMP15	O95972	392 aa		32.74	■■■□□ 2.83
BRF1-213	ENST00000548421	ORC2	Q13416	577 aa	Predicted RBP	32.74	■■■□□ 2.83
BRF1-213	ENST00000548421	ZNF174	Q15697	407 aa		32.74	■■■□□ 2.83
BRF1-213	ENST00000548421	TMEM87A	Q8NBN3	555 aa		32.74	■■■□□ 2.83
BRF1-213	ENST00000548421	TAAR1	Q96RJ0	339 aa		32.74	■■■□□ 2.83
BRF1-213	ENST00000548421	MMP19	Q99542	508 aa		32.74	■■■□□ 2.83
BRF1-213	ENST00000548421	NAP1L4	Q99733	375 aa	Known RBP	32.74	■■■□□ 2.83
BRF1-213	ENST00000548421	EDIL3	O43854	480 aa		32.73	■■■□□ 2.83
BRF1-213	ENST00000548421	MCM4	P33991	863 aa		32.73	■■■□□ 2.83
BRF1-213	ENST00000548421	MCM7	P33993	719 aa		32.73	■■■□□ 2.83
BRF1-213	ENST00000548421	KCTD2	Q14681	263 aa		32.73	■■■□□ 2.83
BRF1-213	ENST00000548421	SLC39A14	Q15043	492 aa		32.73	■■■□□ 2.83
BRF1-213	ENST00000548421	PTPA	Q15257	358 aa		32.73	■■■□□ 2.83
BRF1-213	ENST00000548421	RMDN3	Q96TC7	470 aa		32.73	■■■□□ 2.83
BRF1-213	ENST00000548421	ELP1	O95163	1332 aa		32.72	■■■□□ 2.83
BRF1-213	ENST00000548421	CYP3A4	P08684	503 aa		32.72	■■■□□ 2.83
BRF1-213	ENST00000548421	FCER1A	P12319	257 aa		32.72	■■■□□ 2.83
BRF1-213	ENST00000548421	PPP4R3A	Q6IN85	833 aa		32.72	■■■□□ 2.83
BRF1-213	ENST00000548421	KCNG4	Q8TDN1	519 aa		32.72	■■■□□ 2.83
BRF1-213	ENST00000548421	GCFC2	P16383	781 aa	Known RBP	32.71	■■■□□ 2.83
BRF1-213	ENST00000548421	MAPK4	P31152	587 aa		32.71	■■■□□ 2.83
BRF1-213	ENST00000548421	MOXD1	Q6UVY6	613 aa		32.71	■■■□□ 2.83
BRF1-213	ENST00000548421	PXMP2	Q9NR77	195 aa		32.71	■■■□□ 2.83
BRF1-213	ENST00000548421	SPTLC2	O15270	562 aa		32.7	■■■□□ 2.83
BRF1-213	ENST00000548421	HSPA6	P17066	643 aa		32.7	■■■□□ 2.83
BRF1-213	ENST00000548421	ARHGEF16	Q5VV41	709 aa		32.7	■■■□□ 2.83
BRF1-213	ENST00000548421	PURB	Q96QR8	312 aa	Known RBP	32.7	■■■□□ 2.83
BRF1-213	ENST00000548421	POTEB2	H3BUK9	544 aa		32.69	■■■□□ 2.82
BRF1-213	ENST00000548421	TDP2	O95551	362 aa		32.69	■■■□□ 2.82
BRF1-213	ENST00000548421	UBXN2A	P68543	259 aa		32.69	■■■□□ 2.82
BRF1-213	ENST00000548421	NSUN6	Q8TEA1	469 aa	Known RBP	32.69	■■■□□ 2.82
BRF1-213	ENST00000548421	IVNS1ABP	Q9Y6Y0	642 aa		32.69	■■■□□ 2.82
BRF1-213	ENST00000548421	CYP3A7-CYP3A51P	A0A087WV96	503 aa		32.68	■■■□□ 2.82
BRF1-213	ENST00000548421	DDX11L8	A8MPP1	907 aa		32.68	■■■□□ 2.82
BRF1-213	ENST00000548421	STRN	O43815	780 aa		32.68	■■■□□ 2.82
BRF1-213	ENST00000548421	EIF2AK2	P19525	551 aa	Known RBP	32.68	■■■□□ 2.82
BRF1-213	ENST00000548421	CYP3A7	P24462	503 aa		32.68	■■■□□ 2.82
BRF1-213	ENST00000548421	ABRA	Q8N0Z2	381 aa		32.68	■■■□□ 2.82
BRF1-213	ENST00000548421	DNER	Q8NFT8	737 aa		32.68	■■■□□ 2.82
BRF1-213	ENST00000548421	MORC2	Q9Y6X9	1032 aa	Predicted RBP	32.68	■■■□□ 2.82
BRF1-213	ENST00000548421	NEMF	O60524	1076 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	CIITA	P33076	1130 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	PTGDR	Q13258	359 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	PGM5	Q15124	567 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	GPR142	Q7Z601	462 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	JMY	Q8N9B5	988 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	FAM133A	Q8N9E0	248 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	PDCD2L	Q9BRP1	358 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	DDX25	Q9UHL0	483 aa	Known RBP	32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	ZNF236	Q9UL36	1845 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	PLXNA1	Q9UIW2	1896 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	PPP6R2	O75170	966 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	PRPF40A	O75400	957 aa	Known RBP	32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	ZNF76	P36508	570 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	ATP2C1	P98194	919 aa	Predicted RBP	32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	CNTN2	Q02246	1040 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	NFKBIB	Q15653	356 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	PCNX4	Q63HM2	1172 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	PLEKHH3	Q7Z736	793 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	MBOAT7	Q96N66	472 aa		32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	ADD3	Q9UEY8	706 aa	Known RBP	32.67	■■■□□ 2.82
BRF1-213	ENST00000548421	DNAJC25-GNG10	A0A024R161	153 aa		32.66	■■■□□ 2.82
BRF1-213	ENST00000548421	CFHR5	Q9BXR6	569 aa		32.66	■■■□□ 2.82
BRF1-213	ENST00000548421	MGAM	O43451	1857 aa		32.65	■■■□□ 2.82
BRF1-213	ENST00000548421	LAD1	O00515	517 aa		32.65	■■■□□ 2.82
BRF1-213	ENST00000548421	MARCKS	P29966	332 aa	Predicted RBP	32.65	■■■□□ 2.82
BRF1-213	ENST00000548421	ME1	P48163	572 aa		32.65	■■■□□ 2.82
BRF1-213	ENST00000548421	XRRA1	Q6P2D8	792 aa		32.65	■■■□□ 2.82
BRF1-213	ENST00000548421	C4orf32	Q8N8J7	132 aa		32.65	■■■□□ 2.82
BRF1-213	ENST00000548421	IL31RA	Q8NI17	732 aa		32.65	■■■□□ 2.82
BRF1-213	ENST00000548421	SLC37A4	O43826	429 aa		32.64	■■■□□ 2.82
BRF1-213	ENST00000548421	PGK2	P07205	417 aa		32.64	■■■□□ 2.82
BRF1-213	ENST00000548421	PTPRE	P23469	700 aa		32.64	■■■□□ 2.82
BRF1-213	ENST00000548421	POTED	Q86YR6	584 aa		32.64	■■■□□ 2.82
BRF1-213	ENST00000548421	LMBRD1	Q9NUN5	540 aa		32.64	■■■□□ 2.82
BRF1-213	ENST00000548421	FAM86B1	E9PN63	330 aa		32.63	■■■□□ 2.81
BRF1-213	ENST00000548421	FAM86B2	P0C5J1	330 aa		32.63	■■■□□ 2.81
BRF1-213	ENST00000548421	ADORA2A	P29274	412 aa		32.63	■■■□□ 2.81
BRF1-213	ENST00000548421	GRB14	Q14449	540 aa		32.63	■■■□□ 2.81
BRF1-213	ENST00000548421		Q4G0T1	1027 aa		32.63	■■■□□ 2.81
BRF1-213	ENST00000548421	IWS1	Q96ST2	819 aa		32.63	■■■□□ 2.81
BRF1-213	ENST00000548421	TMEM60	Q9H2L4	133 aa		32.63	■■■□□ 2.81
BRF1-213	ENST00000548421	RNF186	Q9NXI6	227 aa		32.63	■■■□□ 2.81
BRF1-213	ENST00000548421	SOWAHB	A6NEL2	793 aa		32.62	■■■□□ 2.81

Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms