RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 AAK1Q2M2I8 961 aa18.12■□□□□ 0.49
RTN3-211ENST00000542238 MFSD6Q6ZSS7 791 aa18.12■□□□□ 0.49
RTN3-211ENST00000542238 FAM227BQ96M60 508 aa18.12■□□□□ 0.49
RTN3-211ENST00000542238 SLC9A7Q96T83 725 aa18.12■□□□□ 0.49
RTN3-211ENST00000542238 FTOQ9C0B1 505 aaKnown RBP eCLIP18.12■□□□□ 0.49
RTN3-211ENST00000542238 ZMYM6O95789 1325 aa18.12■□□□□ 0.49
RTN3-211ENST00000542238 TANC1Q9C0D5 1861 aa18.12■□□□□ 0.49
RTN3-211ENST00000542238 GTPBP6O43824 516 aaPredicted RBP18.11■□□□□ 0.49
RTN3-211ENST00000542238 CA3P07451 260 aa18.11■□□□□ 0.49
RTN3-211ENST00000542238 EDNRBP24530 442 aa18.11■□□□□ 0.49
RTN3-211ENST00000542238 PDE1AP54750 535 aa18.11■□□□□ 0.49
RTN3-211ENST00000542238 HAND2P61296 217 aa18.11■□□□□ 0.49
RTN3-211ENST00000542238 BFSP2Q13515 415 aa18.11■□□□□ 0.49
RTN3-211ENST00000542238 SKIV2LQ15477 1246 aaKnown RBP18.11■□□□□ 0.49
RTN3-211ENST00000542238 PHOSPHO2Q8TCD6 241 aa18.11■□□□□ 0.49
RTN3-211ENST00000542238 TRIP12Q14669 1992 aaPredicted RBP18.11■□□□□ 0.49
RTN3-211ENST00000542238 TCF20Q9UGU0 1960 aaKnown RBP18.11■□□□□ 0.49
RTN3-211ENST00000542238 TRANK1O15050 2925 aa18.11■□□□□ 0.49
RTN3-211ENST00000542238 MUC3AQ02505 3323 aa18.1■□□□□ 0.49
RTN3-211ENST00000542238 A0A0D9SFI3 127 aa18.1■□□□□ 0.49
RTN3-211ENST00000542238 KIF28PB7ZC32 967 aa18.1■□□□□ 0.49
RTN3-211ENST00000542238 IQCF3P0C7M6 154 aa18.1■□□□□ 0.49
RTN3-211ENST00000542238 CHMP4BP1P59074 171 aa18.1■□□□□ 0.49
RTN3-211ENST00000542238 GPATCH4Q5T3I0 446 aaKnown RBP18.1■□□□□ 0.49
RTN3-211ENST00000542238 COPS5Q92905 334 aa18.1■□□□□ 0.49
RTN3-211ENST00000542238 RNF41Q9H4P4 317 aaPredicted RBP18.1■□□□□ 0.49
RTN3-211ENST00000542238 PRRC2BQ5JSZ5 2229 aaKnown RBP18.1■□□□□ 0.49
RTN3-211ENST00000542238 SNHG28P0DPA3 235 aa18.09■□□□□ 0.49
RTN3-211ENST00000542238 MFAP1P55081 439 aaKnown RBP18.09■□□□□ 0.49
RTN3-211ENST00000542238 USH1GQ495M9 461 aa18.09■□□□□ 0.49
RTN3-211ENST00000542238 CCDC155Q8N6L0 562 aa18.09■□□□□ 0.49
RTN3-211ENST00000542238 RGS22Q8NE09 1264 aa18.09■□□□□ 0.49
RTN3-211ENST00000542238 ESR2Q92731 530 aa18.09■□□□□ 0.49
RTN3-211ENST00000542238 MYH6P13533 1939 aa18.09■□□□□ 0.49
RTN3-211ENST00000542238 CCDC171Q6TFL3 1326 aa18.08■□□□□ 0.49
RTN3-211ENST00000542238 TRIM6-TRIM34B2RNG4 842 aa18.08■□□□□ 0.48
RTN3-211ENST00000542238 POU3F3P20264 500 aaPredicted RBP18.08■□□□□ 0.48
RTN3-211ENST00000542238 NMIQ13287 307 aaPredicted RBP18.08■□□□□ 0.48
RTN3-211ENST00000542238 PPP1R13LQ8WUF5 828 aa18.08■□□□□ 0.48
RTN3-211ENST00000542238 MAF1Q9H063 256 aa18.08■□□□□ 0.48
RTN3-211ENST00000542238 CERS4Q9HA82 394 aa18.08■□□□□ 0.48
RTN3-211ENST00000542238 KIAA1217Q5T5P2 1943 aa18.08■□□□□ 0.48
RTN3-211ENST00000542238 TET1Q8NFU7 2136 aa18.07■□□□□ 0.48
RTN3-211ENST00000542238 RFXAPO00287 272 aa18.07■□□□□ 0.48
RTN3-211ENST00000542238 BAIAP3O94812 1187 aa18.07■□□□□ 0.48
RTN3-211ENST00000542238 GOLGA8HP0CJ92 632 aa18.07■□□□□ 0.48
RTN3-211ENST00000542238 KCNJ6P48051 423 aa18.07■□□□□ 0.48
RTN3-211ENST00000542238 PTGISQ16647 500 aa18.07■□□□□ 0.48
RTN3-211ENST00000542238 CCDC178Q5BJE1 867 aa18.07■□□□□ 0.48
RTN3-211ENST00000542238 ZNF589Q86UQ0 364 aaPredicted RBP18.07■□□□□ 0.48
RTN3-211ENST00000542238 DGKHQ86XP1 1220 aa18.07■□□□□ 0.48
RTN3-211ENST00000542238 HERC6Q8IVU3 1022 aa18.07■□□□□ 0.48
RTN3-211ENST00000542238 MTCH2Q9Y6C9 303 aa18.07■□□□□ 0.48
RTN3-211ENST00000542238 ABCB11O95342 1321 aa18.06■□□□□ 0.48
RTN3-211ENST00000542238 ARIH2O95376 493 aa18.06■□□□□ 0.48
RTN3-211ENST00000542238 GH1P01241 217 aa18.06■□□□□ 0.48
RTN3-211ENST00000542238 BMP1P13497 986 aa18.06■□□□□ 0.48
RTN3-211ENST00000542238 NT5C2P49902 561 aa18.06■□□□□ 0.48
RTN3-211ENST00000542238 TFF2Q03403 129 aa18.06■□□□□ 0.48
RTN3-211ENST00000542238 IQCA1Q86XH1 822 aa18.06■□□□□ 0.48
RTN3-211ENST00000542238 TBC1D10CQ8IV04 446 aa18.06■□□□□ 0.48
RTN3-211ENST00000542238 CAGE1Q8TC20 777 aa18.06■□□□□ 0.48
RTN3-211ENST00000542238 NSUN6Q8TEA1 469 aaKnown RBP18.06■□□□□ 0.48
RTN3-211ENST00000542238 ARNTL2Q8WYA1 636 aa18.06■□□□□ 0.48
RTN3-211ENST00000542238 RILPL2Q969X0 211 aa18.06■□□□□ 0.48
RTN3-211ENST00000542238 ZKSCAN3Q9BRR0 538 aa18.06■□□□□ 0.48
RTN3-211ENST00000542238 UBA5Q9GZZ9 404 aa18.06■□□□□ 0.48
RTN3-211ENST00000542238 ZNF213O14771 459 aa18.05■□□□□ 0.48
RTN3-211ENST00000542238 CASTP20810 708 aaKnown RBP18.05■□□□□ 0.48
RTN3-211ENST00000542238 TAP1Q03518 808 aa18.05■□□□□ 0.48
RTN3-211ENST00000542238 HDAC1Q13547 482 aaPredicted RBP18.05■□□□□ 0.48
RTN3-211ENST00000542238 STXBP2Q15833 593 aa18.05■□□□□ 0.48
RTN3-211ENST00000542238 CDC37Q16543 378 aaPredicted RBP18.05■□□□□ 0.48
RTN3-211ENST00000542238 CCDC62Q6P9F0 684 aa18.05■□□□□ 0.48
RTN3-211ENST00000542238 SEPT14Q6ZU15 432 aa18.05■□□□□ 0.48
RTN3-211ENST00000542238 MCF2L2Q86YR7 1114 aa18.05■□□□□ 0.48
RTN3-211ENST00000542238 AFAP1L1Q8TED9 768 aa18.05■□□□□ 0.48
RTN3-211ENST00000542238 AFG1LQ8WV93 481 aa18.05■□□□□ 0.48
RTN3-211ENST00000542238 KAT14Q9H8E8 782 aa18.05■□□□□ 0.48
RTN3-211ENST00000542238 COG5Q9UP83 839 aa18.05■□□□□ 0.48
RTN3-211ENST00000542238 REV3LO60673 3130 aa18.04■□□□□ 0.48
RTN3-211ENST00000542238 TLL1O43897 1013 aa18.04■□□□□ 0.48
RTN3-211ENST00000542238 PARNO95453 639 aaKnown RBP18.04■□□□□ 0.48
RTN3-211ENST00000542238 MMP3P08254 477 aa18.04■□□□□ 0.48
RTN3-211ENST00000542238 RRP1P56182 461 aaKnown RBP18.04■□□□□ 0.48
RTN3-211ENST00000542238 LY6KQ17RY6 165 aa18.04■□□□□ 0.48
RTN3-211ENST00000542238 CHST3Q7LGC8 479 aa18.04■□□□□ 0.48
RTN3-211ENST00000542238 SESTD1Q86VW0 696 aa18.04■□□□□ 0.48
RTN3-211ENST00000542238 PNMA1Q8ND90 353 aa18.04■□□□□ 0.48
RTN3-211ENST00000542238 IWS1Q96ST2 819 aa18.04■□□□□ 0.48
RTN3-211ENST00000542238 RMDN3Q96TC7 470 aa18.04■□□□□ 0.48
RTN3-211ENST00000542238 CPVLQ9H3G5 476 aa18.04■□□□□ 0.48
RTN3-211ENST00000542238 MYH7BA7E2Y1 1941 aa18.04■□□□□ 0.48
RTN3-211ENST00000542238 NEDD4P46934 1319 aa18.03■□□□□ 0.48
RTN3-211ENST00000542238 LAMA4Q16363 1823 aa18.03■□□□□ 0.48
RTN3-211ENST00000542238 EPOPA6NHQ4 379 aa18.03■□□□□ 0.48
RTN3-211ENST00000542238 DHX16O60231 1041 aaKnown RBP18.03■□□□□ 0.48
RTN3-211ENST00000542238 SELPP16109 830 aa18.03■□□□□ 0.48
RTN3-211ENST00000542238 KCNQ1P51787 676 aa18.03■□□□□ 0.48
RTN3-211ENST00000542238 DGKDQ16760 1214 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms