RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 FCHSD1Q86WN1 690 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 CLSTN2Q9H4D0 955 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 RNF146Q9NTX7 359 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 DDX25Q9UHL0 483 aaKnown RBP20.1■□□□□ 0.81
CLIP1-215ENST00000541108 KCNH3Q9ULD8 1083 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 PASKQ96RG2 1323 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 A0A0G2JMZ2 1700 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 CTAGE5O15320 804 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 HERVK_113P62684 666 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 IL17AQ16552 155 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 AK8Q96MA6 479 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 HOMER2Q9NSB8 354 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 PNMA3Q9UL41 463 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 HUNKP57058 714 aa20.09■□□□□ 0.81
CLIP1-215ENST00000541108 CALCRLQ16602 461 aa20.09■□□□□ 0.81
CLIP1-215ENST00000541108 Q4G0T1 1027 aa20.09■□□□□ 0.81
CLIP1-215ENST00000541108 RNF207Q6ZRF8 634 aa20.09■□□□□ 0.81
CLIP1-215ENST00000541108 POTEDQ86YR6 584 aa20.09■□□□□ 0.81
CLIP1-215ENST00000541108 RIOX2Q8IUF8 465 aa20.09■□□□□ 0.81
CLIP1-215ENST00000541108 CHST13Q8NET6 341 aa20.09■□□□□ 0.81
CLIP1-215ENST00000541108 GTF3C2Q8WUA4 911 aaPredicted RBP20.09■□□□□ 0.81
CLIP1-215ENST00000541108 TNMDQ9H2S6 317 aa20.09■□□□□ 0.81
CLIP1-215ENST00000541108 TBX3O15119 743 aa20.08■□□□□ 0.81
CLIP1-215ENST00000541108 SLC37A4O43826 429 aa20.08■□□□□ 0.81
CLIP1-215ENST00000541108 RPS6P62753 249 aaKnown RBP20.08■□□□□ 0.81
CLIP1-215ENST00000541108 SPECC1Q5M775 1068 aa20.08■□□□□ 0.81
CLIP1-215ENST00000541108 POTEEQ6S8J3 1075 aa20.08■□□□□ 0.81
CLIP1-215ENST00000541108 RBM43Q6ZSC3 357 aaKnown RBP20.08■□□□□ 0.81
CLIP1-215ENST00000541108 SYTL5Q8TDW5 730 aaPredicted RBP20.08■□□□□ 0.81
CLIP1-215ENST00000541108 ACAD9Q9H845 621 aa20.08■□□□□ 0.81
CLIP1-215ENST00000541108 RBBP6Q7Z6E9 1792 aaKnown RBP20.08■□□□□ 0.8
CLIP1-215ENST00000541108 PDIA5Q14554 519 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 PLS1Q14651 629 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 ELOA2Q8IYF1 753 aaPredicted RBP20.07■□□□□ 0.8
CLIP1-215ENST00000541108 PYM1Q9BRP8 204 aaKnown RBP20.07■□□□□ 0.8
CLIP1-215ENST00000541108 FBXO40Q9UH90 709 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 RPTORQ8N122 1335 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 CCL15-CCL14A0A0B4J2E2 113 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 SYCE3A1L190 88 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 KIF3CO14782 793 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 COPB2P35606 906 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 FXR2P51116 673 aaKnown RBP eCLIP20.07■□□□□ 0.84e-6■■■□□ 18.2
CLIP1-215ENST00000541108 CCL15Q16663 113 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 ANKRD23Q86SG2 305 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 SAPCD2Q86UD0 394 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 SMC1BQ8NDV3 1235 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 SYMPKQ92797 1274 aaKnown RBP20.07■□□□□ 0.8
CLIP1-215ENST00000541108 EPSTI1Q96J88 318 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 RAB34Q9BZG1 259 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 SPATC1LQ9H0A9 340 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 KCNMB3Q9NPA1 279 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 BTBD7Q9P203 1132 aa20.07■□□□□ 0.8
CLIP1-215ENST00000541108 CAMK4Q16566 473 aa20.06■□□□□ 0.8
CLIP1-215ENST00000541108 TMEM266Q2M3C6 531 aa20.06■□□□□ 0.8
CLIP1-215ENST00000541108 NSMFQ6X4W1 530 aa20.06■□□□□ 0.8
CLIP1-215ENST00000541108 SLFN12Q8IYM2 578 aa20.06■□□□□ 0.8
CLIP1-215ENST00000541108 IGSF22Q8N9C0 903 aa20.06■□□□□ 0.8
CLIP1-215ENST00000541108 SDF4Q9BRK5 362 aa20.06■□□□□ 0.8
CLIP1-215ENST00000541108 COL20A1Q9P218 1284 aa20.06■□□□□ 0.8
CLIP1-215ENST00000541108 FRMPD4Q14CM0 1322 aa20.06■□□□□ 0.8
CLIP1-215ENST00000541108 FAM86B1E9PN63 330 aa20.05■□□□□ 0.8
CLIP1-215ENST00000541108 SLC25A27O95847 323 aa20.05■□□□□ 0.8
CLIP1-215ENST00000541108 FAM86B2P0C5J1 330 aa20.05■□□□□ 0.8
CLIP1-215ENST00000541108 ZNF76P36508 570 aa20.05■□□□□ 0.8
CLIP1-215ENST00000541108 TXLNAP40222 546 aa20.05■□□□□ 0.8
CLIP1-215ENST00000541108 TXKP42681 527 aa20.05■□□□□ 0.8
CLIP1-215ENST00000541108 LRSAM1Q6UWE0 723 aa20.05■□□□□ 0.8
CLIP1-215ENST00000541108 USP49Q70CQ1 688 aa20.05■□□□□ 0.8
CLIP1-215ENST00000541108 BRI3BPQ8WY22 251 aa20.05■□□□□ 0.8
CLIP1-215ENST00000541108 HAS1Q92839 578 aa20.05■□□□□ 0.8
CLIP1-215ENST00000541108 FAM20AQ96MK3 541 aa20.05■□□□□ 0.8
CLIP1-215ENST00000541108 CCSER1Q9C0I3 900 aa20.05■□□□□ 0.8
CLIP1-215ENST00000541108 RBPJLQ9UBG7 517 aa20.05■□□□□ 0.8
CLIP1-215ENST00000541108 USP25Q9UHP3 1055 aa20.05■□□□□ 0.8
CLIP1-215ENST00000541108 TESPA1A2RU30 521 aaPredicted RBP20.04■□□□□ 0.8
CLIP1-215ENST00000541108 BAATQ14032 418 aaPredicted RBP20.04■□□□□ 0.8
CLIP1-215ENST00000541108 LENG9Q96B70 501 aa20.04■□□□□ 0.8
CLIP1-215ENST00000541108 TTC12Q9H892 705 aaPredicted RBP20.04■□□□□ 0.8
CLIP1-215ENST00000541108 PCDHA12Q9UN75 941 aa20.04■□□□□ 0.8
CLIP1-215ENST00000541108 IGLV3-22A0A075B6J6 115 aa20.03■□□□□ 0.8
CLIP1-215ENST00000541108 BTBD19C9JJ37 291 aa20.03■□□□□ 0.8
CLIP1-215ENST00000541108 PDHXO00330 501 aa20.03■□□□□ 0.8
CLIP1-215ENST00000541108 POLR2DO15514 142 aaKnown RBP20.03■□□□□ 0.8
CLIP1-215ENST00000541108 MARCH6O60337 910 aa20.03■□□□□ 0.8
CLIP1-215ENST00000541108 CNMDO75829 334 aa20.03■□□□□ 0.8
CLIP1-215ENST00000541108 UBA7P41226 1012 aa20.03■□□□□ 0.8
CLIP1-215ENST00000541108 TECP42680 631 aa20.03■□□□□ 0.8
CLIP1-215ENST00000541108 CEP55Q53EZ4 464 aa20.03■□□□□ 0.8
CLIP1-215ENST00000541108 PRR16Q569H4 304 aa20.03■□□□□ 0.8
CLIP1-215ENST00000541108 PCNX4Q63HM2 1172 aa20.03■□□□□ 0.8
CLIP1-215ENST00000541108 KANK3Q6NY19 840 aa20.03■□□□□ 0.8
CLIP1-215ENST00000541108 XRRA1Q6P2D8 792 aa20.03■□□□□ 0.8
CLIP1-215ENST00000541108 KRBA2Q6ZNG9 492 aa20.03■□□□□ 0.8
CLIP1-215ENST00000541108 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.03■□□□□ 0.8
CLIP1-215ENST00000541108 CCDC34Q96HJ3 373 aa20.03■□□□□ 0.8
CLIP1-215ENST00000541108 A1CFQ9NQ94 594 aaKnown RBP20.03■□□□□ 0.8
CLIP1-215ENST00000541108 CYP39A1Q9NYL5 469 aa20.03■□□□□ 0.8
CLIP1-215ENST00000541108 ZNF157P51786 506 aaPredicted RBP20.03■□□□□ 0.8
CLIP1-215ENST00000541108 LONRF3Q496Y0 759 aa20.03■□□□□ 0.8
CLIP1-215ENST00000541108 RGMBQ6NW40 437 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms