RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 SLC16A2P36021 539 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 GRB10Q13322 594 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 CCDC62Q6P9F0 684 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 SESTD1Q86VW0 696 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 MICALL1Q8N3F8 863 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 OR6J1Q8NGC5 347 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 SCFD2Q8WU76 684 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 PPP1R13LQ8WUF5 828 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 DHX38Q92620 1227 aaKnown RBP8.63□□□□□ -1.03
YBX3-209ENST00000540747 COPS5Q92905 334 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 KHSRPQ92945 711 aaKnown RBP eCLIP8.63□□□□□ -1.03
YBX3-209ENST00000540747 TMEM47Q9BQJ4 181 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 LRFN3Q9BTN0 628 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 FSD1Q9BTV5 496 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 EPHX3Q9H6B9 360 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 TCP11L1Q9NUJ3 509 aa8.63□□□□□ -1.03
YBX3-209ENST00000540747 ZMYM6O95789 1325 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 LCHNA4D1U4 455 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 GTPBP6O43824 516 aaPredicted RBP8.62□□□□□ -1.03
YBX3-209ENST00000540747 CXCL10P02778 98 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 PDHBP11177 359 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 TOP1P11387 765 aaKnown RBP8.62□□□□□ -1.03
YBX3-209ENST00000540747 ACTN1P12814 892 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 WDR5P61964 334 aaKnown RBP8.62□□□□□ -1.03
YBX3-209ENST00000540747 RPS6P62753 249 aaKnown RBP8.62□□□□□ -1.03
YBX3-209ENST00000540747 ZNF543Q08ER8 600 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 MKRN4PQ13434 485 aaPredicted RBP8.62□□□□□ -1.03
YBX3-209ENST00000540747 PPP2R5BQ15173 497 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 CCDC96Q2M329 555 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 TCTN1Q2MV58 587 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 TRAF7Q6Q0C0 670 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 RGS22Q8NE09 1264 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 IL27Q8NEV9 243 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 DNERQ8NFT8 737 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 ARNTL2Q8WYA1 636 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 KAT2BQ92831 832 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 FAM122AQ96E09 287 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 CERS4Q9HA82 394 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 LMCD1Q9NZU5 365 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 ISY1Q9ULR0 285 aaKnown RBP8.62□□□□□ -1.03
YBX3-209ENST00000540747 PCDHB15Q9Y5E8 787 aa8.62□□□□□ -1.03
YBX3-209ENST00000540747 FRMPD2Q68DX3 1309 aaPredicted RBP8.61□□□□□ -1.03
YBX3-209ENST00000540747 TRIOO75962 3097 aa8.61□□□□□ -1.03
YBX3-209ENST00000540747 PTPDC1A2A3K4 754 aa8.61□□□□□ -1.03
YBX3-209ENST00000540747 RANBP6O60518 1105 aaKnown RBP8.61□□□□□ -1.03
YBX3-209ENST00000540747 MX1P20591 662 aa8.61□□□□□ -1.03
YBX3-209ENST00000540747 ARHGAP1Q07960 439 aa8.61□□□□□ -1.03
YBX3-209ENST00000540747 PDE4DQ08499 809 aa8.61□□□□□ -1.03
YBX3-209ENST00000540747 BFSP2Q13515 415 aa8.61□□□□□ -1.03
YBX3-209ENST00000540747 TRIM71Q2Q1W2 868 aaKnown RBP8.61□□□□□ -1.03
YBX3-209ENST00000540747 GDF6Q6KF10 455 aaPredicted RBP8.61□□□□□ -1.03
YBX3-209ENST00000540747 RNF207Q6ZRF8 634 aa8.61□□□□□ -1.03
YBX3-209ENST00000540747 CAGE1Q8TC20 777 aa8.61□□□□□ -1.03
YBX3-209ENST00000540747 AFAP1L1Q8TED9 768 aa8.61□□□□□ -1.03
YBX3-209ENST00000540747 HLA-CQ95604 372 aa8.61□□□□□ -1.03
YBX3-209ENST00000540747 MAF1Q9H063 256 aa8.61□□□□□ -1.03
YBX3-209ENST00000540747 CD320Q9NPF0 282 aa8.61□□□□□ -1.03
YBX3-209ENST00000540747 PNMA2Q9UL42 364 aa8.61□□□□□ -1.03
YBX3-209ENST00000540747 RAD50Q92878 1312 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 GPR37L1O60883 481 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 NBNO60934 754 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 FGAP02671 866 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 MMP3P08254 477 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 TXNP10599 105 aaKnown RBP8.6□□□□□ -1.03
YBX3-209ENST00000540747 HOXD8P13378 290 aaPredicted RBP8.6□□□□□ -1.03
YBX3-209ENST00000540747 SELPP16109 830 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 CALML3P27482 149 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 ERVK-21P61565 698 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 DEFB103AP81534 67 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 MBTPS1Q14703 1052 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 BRDTQ58F21 947 aaPredicted RBP8.6□□□□□ -1.03
YBX3-209ENST00000540747 FAM47CQ5HY64 1035 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 TICAM2Q86XR7 235 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 RETREG2Q8NC44 543 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 AFG1LQ8WV93 481 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 EMID1Q96A84 441 aaPredicted RBP8.6□□□□□ -1.03
YBX3-209ENST00000540747 GPCPD1Q9NPB8 672 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 GPHNQ9NQX3 736 aaPredicted RBP8.6□□□□□ -1.03
YBX3-209ENST00000540747 HELLSQ9NRZ9 838 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 COL20A1Q9P218 1284 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 MTMR7Q9Y216 660 aa8.6□□□□□ -1.03
YBX3-209ENST00000540747 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.59□□□□□ -1.03
YBX3-209ENST00000540747 A0A0D9SFI3 127 aa8.59□□□□□ -1.03
YBX3-209ENST00000540747 KIF28PB7ZC32 967 aa8.59□□□□□ -1.03
YBX3-209ENST00000540747 PI4K2BG5E9Z4 385 aa8.59□□□□□ -1.03
YBX3-209ENST00000540747 RBAK-RBAKDNI3L0D1 243 aa8.59□□□□□ -1.03
YBX3-209ENST00000540747 HAS3O00219 553 aa8.59□□□□□ -1.03
YBX3-209ENST00000540747 GJB5O95377 273 aa8.59□□□□□ -1.03
YBX3-209ENST00000540747 PARNO95453 639 aaKnown RBP8.59□□□□□ -1.03
YBX3-209ENST00000540747 GHRHRQ02643 423 aa8.59□□□□□ -1.03
YBX3-209ENST00000540747 SKIV2LQ15477 1246 aaKnown RBP8.59□□□□□ -1.03
YBX3-209ENST00000540747 PTGISQ16647 500 aa8.59□□□□□ -1.03
YBX3-209ENST00000540747 TMEM31Q5JXX7 168 aa8.59□□□□□ -1.03
YBX3-209ENST00000540747 CNKSR3Q6P9H4 555 aa8.59□□□□□ -1.03
YBX3-209ENST00000540747 LRRC8DQ7L1W4 858 aa8.59□□□□□ -1.03
YBX3-209ENST00000540747 TMCO2Q7Z6W1 182 aaPredicted RBP8.59□□□□□ -1.03
YBX3-209ENST00000540747 ZNF589Q86UQ0 364 aaPredicted RBP8.59□□□□□ -1.03
YBX3-209ENST00000540747 TBC1D10CQ8IV04 446 aa8.59□□□□□ -1.03
YBX3-209ENST00000540747 SYTL5Q8TDW5 730 aaPredicted RBP8.59□□□□□ -1.03
YBX3-209ENST00000540747 GDPD5Q8WTR4 605 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms