RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 ENAHQ8N8S7 591 aaPredicted RBP16.53■□□□□ 0.24
SNHG1-213ENST00000540725 RGS22Q8NE09 1264 aa16.53■□□□□ 0.24
SNHG1-213ENST00000540725 ANKS1AQ92625 1134 aa16.53■□□□□ 0.24
SNHG1-213ENST00000540725 ZSCAN10Q96SZ4 725 aaPredicted RBP16.53■□□□□ 0.24
SNHG1-213ENST00000540725 MTG1Q9BT17 334 aaPredicted RBP16.53■□□□□ 0.24
SNHG1-213ENST00000540725 GPHNQ9NQX3 736 aaPredicted RBP16.53■□□□□ 0.24
SNHG1-213ENST00000540725 TANC1Q9C0D5 1861 aa16.53■□□□□ 0.24
SNHG1-213ENST00000540725 TNKSO95271 1327 aa16.53■□□□□ 0.24
SNHG1-213ENST00000540725 ABCB11O95342 1321 aa16.53■□□□□ 0.24
SNHG1-213ENST00000540725 SUPT20HL2P0C7V6 817 aa16.52■□□□□ 0.24
SNHG1-213ENST00000540725 ASPRV1Q53RT3 343 aa16.52■□□□□ 0.24
SNHG1-213ENST00000540725 OTOP2Q7RTS6 562 aa16.52■□□□□ 0.24
SNHG1-213ENST00000540725 ADGRF4Q8IZF3 695 aa16.52■□□□□ 0.24
SNHG1-213ENST00000540725 TET1Q8NFU7 2136 aa16.52■□□□□ 0.24
SNHG1-213ENST00000540725 COPS5Q92905 334 aa16.52■□□□□ 0.24
SNHG1-213ENST00000540725 SCLYQ96I15 445 aa16.52■□□□□ 0.24
SNHG1-213ENST00000540725 TRMT13Q9NUP7 481 aaKnown RBP16.52■□□□□ 0.24
SNHG1-213ENST00000540725 ZSWIM5Q9P217 1185 aa16.52■□□□□ 0.24
SNHG1-213ENST00000540725 SPTBN5Q9NRC6 3674 aaKnown RBP16.52■□□□□ 0.24
SNHG1-213ENST00000540725 A6NJR5 290 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 TXNP10599 105 aaKnown RBP16.51■□□□□ 0.23
SNHG1-213ENST00000540725 CYP2C9P11712 490 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 RAB30Q15771 203 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 NBPF20Q3BBV1 942 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 FAM47CQ5HY64 1035 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 RPUSD2Q8IZ73 545 aaKnown RBP16.51■□□□□ 0.23
SNHG1-213ENST00000540725 TBC1D5Q92609 795 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 MAF1Q9H063 256 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 CTNNA3Q9UI47 895 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 MSRAQ9UJ68 235 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 DHX16O60231 1041 aaKnown RBP16.51■□□□□ 0.23
SNHG1-213ENST00000540725 KPNA6O60684 536 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 ARIH2O95376 493 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 PARP1P09874 1014 aaKnown RBP16.51■□□□□ 0.23
SNHG1-213ENST00000540725 TTLL4Q14679 1199 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 QRICH1Q2TAL8 776 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 USP38Q8NB14 1042 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 SYTL5Q8TDW5 730 aaPredicted RBP16.51■□□□□ 0.23
SNHG1-213ENST00000540725 VWCEQ96DN2 955 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 GAS2L1Q99501 681 aaPredicted RBP16.51■□□□□ 0.23
SNHG1-213ENST00000540725 KRT23Q9C075 422 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 PRDM12Q9H4Q4 367 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 CNNM2Q9H8M5 875 aa16.51■□□□□ 0.23
SNHG1-213ENST00000540725 NFRKBQ6P4R8 1299 aa16.5■□□□□ 0.23
SNHG1-213ENST00000540725 FBXO11Q86XK2 927 aa16.5■□□□□ 0.23
SNHG1-213ENST00000540725 MCF2L2Q86YR7 1114 aa16.5■□□□□ 0.23
SNHG1-213ENST00000540725 PPP1R13LQ8WUF5 828 aa16.5■□□□□ 0.23
SNHG1-213ENST00000540725 TAAR1Q96RJ0 339 aa16.5■□□□□ 0.23
SNHG1-213ENST00000540725 UBAC1Q9BSL1 405 aa16.5■□□□□ 0.23
SNHG1-213ENST00000540725 IL25Q9H293 177 aa16.5■□□□□ 0.23
SNHG1-213ENST00000540725 NKX2-4Q9H2Z4 354 aa16.5■□□□□ 0.23
SNHG1-213ENST00000540725 COL20A1Q9P218 1284 aa16.5■□□□□ 0.23
SNHG1-213ENST00000540725 TRANK1O15050 2925 aa16.5■□□□□ 0.23
SNHG1-213ENST00000540725 ZBBXA8MT70 800 aa16.49■□□□□ 0.23
SNHG1-213ENST00000540725 CCDC62Q6P9F0 684 aa16.49■□□□□ 0.23
SNHG1-213ENST00000540725 NSUN6Q8TEA1 469 aaKnown RBP16.49■□□□□ 0.23
SNHG1-213ENST00000540725 JMJD4Q9H9V9 463 aa16.49■□□□□ 0.23
SNHG1-213ENST00000540725 VAT1LQ9HCJ6 419 aa16.49■□□□□ 0.23
SNHG1-213ENST00000540725 YBX2Q9Y2T7 364 aaKnown RBP16.49■□□□□ 0.23
SNHG1-213ENST00000540725 MRPL11Q9Y3B7 192 aaKnown RBP16.49■□□□□ 0.23
SNHG1-213ENST00000540725 SLC4A7Q9Y6M7 1214 aa16.49■□□□□ 0.23
SNHG1-213ENST00000540725 PFKMP08237 780 aa16.48■□□□□ 0.23
SNHG1-213ENST00000540725 PTPN11Q06124 597 aaPredicted RBP16.48■□□□□ 0.23
SNHG1-213ENST00000540725 IFIT1BQ5T764 474 aaKnown RBP16.48■□□□□ 0.23
SNHG1-213ENST00000540725 SEPT14Q6ZU15 432 aa16.48■□□□□ 0.23
SNHG1-213ENST00000540725 DEFB128Q7Z7B8 93 aa16.48■□□□□ 0.23
SNHG1-213ENST00000540725 IWS1Q96ST2 819 aa16.48■□□□□ 0.23
SNHG1-213ENST00000540725 RMDN3Q96TC7 470 aa16.48■□□□□ 0.23
SNHG1-213ENST00000540725 SLC28A3Q9HAS3 691 aa16.48■□□□□ 0.23
SNHG1-213ENST00000540725 GH1P01241 217 aa16.47■□□□□ 0.23
SNHG1-213ENST00000540725 RABGGTBP53611 331 aa16.47■□□□□ 0.23
SNHG1-213ENST00000540725 STXBP2Q15833 593 aa16.47■□□□□ 0.23
SNHG1-213ENST00000540725 LY6KQ17RY6 165 aa16.47■□□□□ 0.23
SNHG1-213ENST00000540725 STAG2Q8N3U4 1231 aa16.47■□□□□ 0.23
SNHG1-213ENST00000540725 AFG1LQ8WV93 481 aa16.47■□□□□ 0.23
SNHG1-213ENST00000540725 PRRC2BQ5JSZ5 2229 aaKnown RBP16.47■□□□□ 0.23
SNHG1-213ENST00000540725 PITPNM1O00562 1244 aa16.46■□□□□ 0.23
SNHG1-213ENST00000540725 MMP3P08254 477 aa16.46■□□□□ 0.23
SNHG1-213ENST00000540725 GSPT1P15170 499 aaKnown RBP16.46■□□□□ 0.23
SNHG1-213ENST00000540725 EIF2AK2P19525 551 aaKnown RBP16.46■□□□□ 0.23
SNHG1-213ENST00000540725 PDE4AP27815 886 aa16.46■□□□□ 0.23
SNHG1-213ENST00000540725 CHMP4BP1P59074 171 aa16.46■□□□□ 0.23
SNHG1-213ENST00000540725 ARHGAP1Q07960 439 aa16.46■□□□□ 0.23
SNHG1-213ENST00000540725 ADGRE1Q14246 886 aa16.46■□□□□ 0.23
SNHG1-213ENST00000540725 SEC23AQ15436 765 aa16.46■□□□□ 0.23
SNHG1-213ENST00000540725 TTC22Q5TAA0 569 aa16.46■□□□□ 0.23
SNHG1-213ENST00000540725 ARHGEF16Q5VV41 709 aa16.46■□□□□ 0.23
SNHG1-213ENST00000540725 CYB5R4Q7L1T6 521 aa16.46■□□□□ 0.23
SNHG1-213ENST00000540725 PPM1EQ8WY54 764 aa16.46■□□□□ 0.23
SNHG1-213ENST00000540725 AMNQ9BXJ7 453 aa16.46■□□□□ 0.23
SNHG1-213ENST00000540725 NOD1Q9Y239 953 aa16.46■□□□□ 0.23
SNHG1-213ENST00000540725 PCDHA11Q9Y5I1 949 aa16.46■□□□□ 0.23
SNHG1-213ENST00000540725 PTPRSQ13332 1948 aa16.45■□□□□ 0.22
SNHG1-213ENST00000540725 BDP1A6H8Y1 2624 aa16.45■□□□□ 0.22
SNHG1-213ENST00000540725 KLRF2D3W0D1 207 aa16.45■□□□□ 0.22
SNHG1-213ENST00000540725 CFBP00751 764 aa16.45■□□□□ 0.22
SNHG1-213ENST00000540725 ATP2A2P16615 1042 aaKnown RBP16.45■□□□□ 0.22
SNHG1-213ENST00000540725 RFC2P35250 354 aa16.45■□□□□ 0.22
SNHG1-213ENST00000540725 CHST3Q7LGC8 479 aa16.45■□□□□ 0.22
SNHG1-213ENST00000540725 RETREG2Q8NC44 543 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms