RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 NOA1Q8NC60 698 aaKnown RBP18.9■□□□□ 0.62
USP28-208ENST00000540438 PSTPIP2Q9H939 334 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 ATP6V0A2Q9Y487 856 aa18.9■□□□□ 0.62
USP28-208ENST00000540438 POTEB3A0JP26 581 aa18.89■□□□□ 0.61
USP28-208ENST00000540438 POTECB2RU33 542 aa18.89■□□□□ 0.61
USP28-208ENST00000540438 H7C1D1 291 aa18.89■□□□□ 0.61
USP28-208ENST00000540438 CRKP46108 304 aa18.89■□□□□ 0.61
USP28-208ENST00000540438 KCNJ6P48051 423 aa18.89■□□□□ 0.61
USP28-208ENST00000540438 POTEBQ6S5H4 581 aa18.89■□□□□ 0.61
USP28-208ENST00000540438 SV2BQ7L1I2 683 aa18.89■□□□□ 0.61
USP28-208ENST00000540438 CERKQ8TCT0 537 aa18.89■□□□□ 0.61
USP28-208ENST00000540438 P2RX7Q99572 595 aaKnown RBP18.89■□□□□ 0.61
USP28-208ENST00000540438 KIAA1024Q9UPX6 916 aa18.89■□□□□ 0.61
USP28-208ENST00000540438 PCDHA1Q9Y5I3 950 aa18.89■□□□□ 0.61
USP28-208ENST00000540438 ARHGAP25P42331 645 aa18.89■□□□□ 0.61
USP28-208ENST00000540438 CCDC122Q5T0U0 273 aa18.89■□□□□ 0.61
USP28-208ENST00000540438 TMC4Q7Z404 712 aa18.89■□□□□ 0.61
USP28-208ENST00000540438 CDAN1Q8IWY9 1227 aa18.89■□□□□ 0.61
USP28-208ENST00000540438 PNKPQ96T60 521 aa18.89■□□□□ 0.61
USP28-208ENST00000540438 CCSER1Q9C0I3 900 aa18.89■□□□□ 0.61
USP28-208ENST00000540438 DDX25Q9UHL0 483 aaKnown RBP18.89■□□□□ 0.61
USP28-208ENST00000540438 RHOBTB3O94955 611 aa18.88■□□□□ 0.61
USP28-208ENST00000540438 NDUFA10O95299 355 aa18.88■□□□□ 0.61
USP28-208ENST00000540438 CHMP4BP1P59074 171 aa18.88■□□□□ 0.61
USP28-208ENST00000540438 ZNF543Q08ER8 600 aa18.88■□□□□ 0.61
USP28-208ENST00000540438 KIAA1328Q86T90 577 aa18.88■□□□□ 0.61
USP28-208ENST00000540438 SMAP1Q8IYB5 467 aaPredicted RBP18.88■□□□□ 0.61
USP28-208ENST00000540438 TEKT1Q969V4 418 aa18.88■□□□□ 0.61
USP28-208ENST00000540438 PHACTR2O75167 634 aa18.88■□□□□ 0.61
USP28-208ENST00000540438 CYP26C1Q6V0L0 522 aa18.88■□□□□ 0.61
USP28-208ENST00000540438 TBC1D22AQ8WUA7 517 aa18.88■□□□□ 0.61
USP28-208ENST00000540438 LARP4BQ92615 738 aaKnown RBP18.88■□□□□ 0.61
USP28-208ENST00000540438 FEZ1Q99689 392 aa18.88■□□□□ 0.61
USP28-208ENST00000540438 GAKO14976 1311 aa18.88■□□□□ 0.61
USP28-208ENST00000540438 SBF2Q86WG5 1849 aa18.88■□□□□ 0.61
USP28-208ENST00000540438 SFI1A8K8P3 1242 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 LGALS16A8MUM7 142 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 CXCR5P32302 372 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 MATR3P43243 847 aaKnown RBP eCLIP18.87■□□□□ 0.61
USP28-208ENST00000540438 PLA2G4AP47712 749 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 QRICH1Q2TAL8 776 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 OR8K1Q8NGG5 319 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 RIOX1Q9H6W3 641 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 PRDM4Q9UKN5 801 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 ROBO3Q96MS0 1386 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 TCP10L2B9ZVM9 353 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 MYO1BO43795 1136 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 GABPAQ06546 454 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 PRR16Q569H4 304 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 SH3BP5LQ7L8J4 393 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 SP8Q8IXZ3 490 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 GSPT2Q8IYD1 628 aaKnown RBP18.87■□□□□ 0.61
USP28-208ENST00000540438 TBC1D5Q92609 795 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 HAS1Q92839 578 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 TRIM34Q9BYJ4 488 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 EHD2Q9NZN4 543 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 MORC2Q9Y6X9 1032 aaPredicted RBP18.87■□□□□ 0.61
USP28-208ENST00000540438 DDX60LQ5H9U9 1706 aaKnown RBP18.87■□□□□ 0.61
USP28-208ENST00000540438 CTAGE9A4FU28 777 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 POTEFA5A3E0 1075 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 ATP1A1P05023 1023 aaKnown RBP18.87■□□□□ 0.61
USP28-208ENST00000540438 POTEIP0CG38 1075 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 TSR1Q2NL82 804 aaKnown RBP18.87■□□□□ 0.61
USP28-208ENST00000540438 POTEGQ6S5H5 508 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 POTEEQ6S8J3 1075 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 C2CD5Q86YS7 1000 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 TRERF1Q96PN7 1200 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 BCS1LQ9Y276 419 aa18.87■□□□□ 0.61
USP28-208ENST00000540438 EFCAB8A8MWE9 144 aa18.86■□□□□ 0.61
USP28-208ENST00000540438 PSMC6P62333 389 aa18.86■□□□□ 0.61
USP28-208ENST00000540438 HERVK_113P62684 666 aa18.86■□□□□ 0.61
USP28-208ENST00000540438 PPARDQ03181 441 aa18.86■□□□□ 0.61
USP28-208ENST00000540438 SLF2Q8IX21 1173 aa18.86■□□□□ 0.61
USP28-208ENST00000540438 PKD2L1Q9P0L9 805 aa18.86■□□□□ 0.61
USP28-208ENST00000540438 SMCHD1A6NHR9 2005 aa18.86■□□□□ 0.61
USP28-208ENST00000540438 LRRC10BA6NIK2 292 aa18.86■□□□□ 0.61
USP28-208ENST00000540438 KRT79Q5XKE5 535 aa18.86■□□□□ 0.61
USP28-208ENST00000540438 DAGLBQ8NCG7 672 aa18.86■□□□□ 0.61
USP28-208ENST00000540438 COA1Q9GZY4 146 aa18.86■□□□□ 0.61
USP28-208ENST00000540438 PCDHA12Q9UN75 941 aa18.86■□□□□ 0.61
USP28-208ENST00000540438 CHMP2AO43633 222 aa18.85■□□□□ 0.61
USP28-208ENST00000540438 CCNE1P24864 410 aa18.85■□□□□ 0.61
USP28-208ENST00000540438 CERKLQ49MI3 558 aaPredicted RBP18.85■□□□□ 0.61
USP28-208ENST00000540438 TMTC1Q8IUR5 882 aa18.85■□□□□ 0.61
USP28-208ENST00000540438 TMX4Q9H1E5 349 aaPredicted RBP18.85■□□□□ 0.61
USP28-208ENST00000540438 ZBTB12Q9Y330 459 aaPredicted RBP18.85■□□□□ 0.61
USP28-208ENST00000540438 ADAMTSL1Q8N6G6 1762 aa18.85■□□□□ 0.61
USP28-208ENST00000540438 ZBTB39O15060 712 aa18.85■□□□□ 0.61
USP28-208ENST00000540438 ECE1P42892 770 aa18.85■□□□□ 0.61
USP28-208ENST00000540438 RRP1BQ14684 758 aaKnown RBP18.85■□□□□ 0.61
USP28-208ENST00000540438 SKIDA1Q1XH10 827 aa18.85■□□□□ 0.61
USP28-208ENST00000540438 SLFN13Q68D06 897 aa18.85■□□□□ 0.61
USP28-208ENST00000540438 MIGA2Q7L4E1 593 aa18.85■□□□□ 0.61
USP28-208ENST00000540438 ZNF507Q8TCN5 953 aa18.85■□□□□ 0.61
USP28-208ENST00000540438 MTMR9Q96QG7 549 aa18.85■□□□□ 0.61
USP28-208ENST00000540438 MLXIPQ9HAP2 919 aa18.85■□□□□ 0.61
USP28-208ENST00000540438 HLA-DOAP06340 250 aa18.84■□□□□ 0.61
USP28-208ENST00000540438 HOXA10P31260 410 aaPredicted RBP18.84■□□□□ 0.61
USP28-208ENST00000540438 RNASE9P60153 205 aaKnown RBP18.84■□□□□ 0.61
USP28-208ENST00000540438 SPAG1Q07617 926 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms