RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 NOM1Q5C9Z4 860 aaKnown RBP12.14□□□□□ -0.47
LEMD3-202ENST00000539442 RIOX2Q8IUF8 465 aa12.14□□□□□ -0.47
LEMD3-202ENST00000539442 JMYQ8N9B5 988 aa12.14□□□□□ -0.47
LEMD3-202ENST00000539442 TBCKQ8TEA7 893 aa12.14□□□□□ -0.47
LEMD3-202ENST00000539442 FTOQ9C0B1 505 aaKnown RBP eCLIP12.14□□□□□ -0.47
LEMD3-202ENST00000539442 SPATC1LQ9H0A9 340 aa12.14□□□□□ -0.47
LEMD3-202ENST00000539442 ACAD9Q9H845 621 aa12.14□□□□□ -0.47
LEMD3-202ENST00000539442 GDPD2Q9HCC8 539 aa12.14□□□□□ -0.47
LEMD3-202ENST00000539442 LMBRD1Q9NUN5 540 aa12.14□□□□□ -0.47
LEMD3-202ENST00000539442 BTBD7Q9P203 1132 aa12.14□□□□□ -0.47
LEMD3-202ENST00000539442 PCDHB6Q9Y5E3 794 aa12.14□□□□□ -0.47
LEMD3-202ENST00000539442 CLIC4Q9Y696 253 aa12.14□□□□□ -0.47
LEMD3-202ENST00000539442 FAM155AB1AL88 458 aaPredicted RBP12.13□□□□□ -0.47
LEMD3-202ENST00000539442 NFIBO00712 420 aa12.13□□□□□ -0.47
LEMD3-202ENST00000539442 SPTLC2O15270 562 aa12.13□□□□□ -0.47
LEMD3-202ENST00000539442 PPP6R2O75170 966 aa12.13□□□□□ -0.47
LEMD3-202ENST00000539442 PRPF40AO75400 957 aaKnown RBP12.13□□□□□ -0.47
LEMD3-202ENST00000539442 CNMDO75829 334 aa12.13□□□□□ -0.47
LEMD3-202ENST00000539442 SLC25A27O95847 323 aa12.13□□□□□ -0.47
LEMD3-202ENST00000539442 GCFC2P16383 781 aaKnown RBP12.13□□□□□ -0.47
LEMD3-202ENST00000539442 SREBF1P36956 1147 aa12.13□□□□□ -0.47
LEMD3-202ENST00000539442 CEBPZQ03701 1054 aaKnown RBP12.13□□□□□ -0.47
LEMD3-202ENST00000539442 PLS1Q14651 629 aa12.13□□□□□ -0.47
LEMD3-202ENST00000539442 PTPAQ15257 358 aa12.13□□□□□ -0.47
LEMD3-202ENST00000539442 MUM1L1Q5H9M0 696 aa12.13□□□□□ -0.47
LEMD3-202ENST00000539442 POTEEQ6S8J3 1075 aa12.13□□□□□ -0.47
LEMD3-202ENST00000539442 MOXD1Q6UVY6 613 aa12.13□□□□□ -0.47
LEMD3-202ENST00000539442 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.13□□□□□ -0.47
LEMD3-202ENST00000539442 FAM43AQ8N2R8 423 aa12.13□□□□□ -0.47
LEMD3-202ENST00000539442 SMCR8Q8TEV9 937 aaPredicted RBP12.13□□□□□ -0.47
LEMD3-202ENST00000539442 PTPN18Q99952 460 aa12.13□□□□□ -0.47
LEMD3-202ENST00000539442 HOMER2Q9NSB8 354 aa12.13□□□□□ -0.47
LEMD3-202ENST00000539442 RBPJLQ9UBG7 517 aa12.13□□□□□ -0.47
LEMD3-202ENST00000539442 RIPK3Q9Y572 518 aa12.13□□□□□ -0.47
LEMD3-202ENST00000539442 LAD1O00515 517 aa12.12□□□□□ -0.47
LEMD3-202ENST00000539442 CYP2C8P10632 490 aa12.12□□□□□ -0.47
LEMD3-202ENST00000539442 ATP2B1P20020 1258 aa12.12□□□□□ -0.47
LEMD3-202ENST00000539442 HOXA13P31271 388 aaPredicted RBP12.12□□□□□ -0.47
LEMD3-202ENST00000539442 APLP1P51693 650 aa12.12□□□□□ -0.47
LEMD3-202ENST00000539442 USP11P51784 963 aa12.12□□□□□ -0.47
LEMD3-202ENST00000539442 UBE2HP62256 183 aa12.12□□□□□ -0.47
LEMD3-202ENST00000539442 NBR1Q14596 966 aa12.12□□□□□ -0.47
LEMD3-202ENST00000539442 PPP4R3AQ6IN85 833 aa12.12□□□□□ -0.47
LEMD3-202ENST00000539442 SHCBP1Q8NEM2 672 aa12.12□□□□□ -0.47
LEMD3-202ENST00000539442 CRYGNQ8WXF5 182 aa12.12□□□□□ -0.47
LEMD3-202ENST00000539442 PAGR1Q9BTK6 254 aa12.12□□□□□ -0.47
LEMD3-202ENST00000539442 MORF4L1Q9UBU8 362 aa12.12□□□□□ -0.47
LEMD3-202ENST00000539442 RBBP6Q7Z6E9 1792 aaKnown RBP12.11□□□□□ -0.47
LEMD3-202ENST00000539442 GOLGA6L4A6NEF3 574 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 RASSF10A6NK89 507 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 MBD3O95983 291 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 CYP3A4P08684 503 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 RPS6P62753 249 aaKnown RBP12.11□□□□□ -0.47
LEMD3-202ENST00000539442 ERVK-9P63128 1117 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 ERVK-24P63145 666 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 CCNA1P78396 465 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 ARHGAP4P98171 946 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 ATP2C1P98194 919 aaPredicted RBP12.11□□□□□ -0.47
LEMD3-202ENST00000539442 ZNF174Q15697 407 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 SKOR2Q2VWA4 1001 aaPredicted RBP12.11□□□□□ -0.47
LEMD3-202ENST00000539442 LETM2Q2VYF4 491 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 NSMFQ6X4W1 530 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 RNF207Q6ZRF8 634 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 FCHSD1Q86WN1 690 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 SYTL5Q8TDW5 730 aaPredicted RBP12.11□□□□□ -0.47
LEMD3-202ENST00000539442 TBC1D5Q92609 795 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 PGBD1Q96JS3 809 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 MOV10L1Q9BXT6 1211 aaKnown RBP12.11□□□□□ -0.47
LEMD3-202ENST00000539442 MROH8Q9H579 483 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 COL11A1P12107 1806 aaPredicted RBP12.11□□□□□ -0.47
LEMD3-202ENST00000539442 PFASO15067 1338 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 FRMPD4Q14CM0 1322 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 RPTORQ8N122 1335 aa12.11□□□□□ -0.47
LEMD3-202ENST00000539442 CYP3A7-CYP3A51PA0A087WV96 503 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 IGF2BP3O00425 579 aaKnown RBP eCLIP12.1□□□□□ -0.47
LEMD3-202ENST00000539442 WNT7AO00755 349 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 NEMFO60524 1076 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 CCNT1O60563 726 aaKnown RBP12.1□□□□□ -0.47
LEMD3-202ENST00000539442 CYP3A7P24462 503 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 CIITAP33076 1130 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 MCM7P33993 719 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 ME1P48163 572 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 TM4SF4P48230 202 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 NOGQ13253 232 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 FAM110CQ1W6H9 321 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 DEFB115Q30KQ5 88 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 ARL6IP4Q66PJ3 421 aaKnown RBP12.1□□□□□ -0.47
LEMD3-202ENST00000539442 ADALQ6DHV7 355 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 SLC30A10Q6XR72 485 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 NCAPG2Q86XI2 1143 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 IFNL1Q8IU54 200 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 KRI1Q8N9T8 703 aaKnown RBP12.1□□□□□ -0.47
LEMD3-202ENST00000539442 GPRC5AQ8NFJ5 357 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 FERMT2Q96AC1 680 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 TXNRD2Q9NNW7 524 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 A1CFQ9NQ94 594 aaKnown RBP12.1□□□□□ -0.47
LEMD3-202ENST00000539442 CYP39A1Q9NYL5 469 aa12.1□□□□□ -0.47
LEMD3-202ENST00000539442 A0A1W2PQ27 194 aa12.09□□□□□ -0.47
LEMD3-202ENST00000539442 A0A1W2PQ64 194 aa12.09□□□□□ -0.47
LEMD3-202ENST00000539442 A0A1W2PQD8 194 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms