RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 NSUN6Q8TEA1 469 aaKnown RBP16.24■□□□□ 0.19
SYNE1-235ENST00000537033 NOC4LQ9BVI4 516 aaKnown RBP16.24■□□□□ 0.19
SYNE1-235ENST00000537033 FGBP02675 491 aa16.23■□□□□ 0.19
SYNE1-235ENST00000537033 CCL23P55773 120 aa16.23■□□□□ 0.19
SYNE1-235ENST00000537033 RASIP1Q5U651 963 aa16.23■□□□□ 0.19
SYNE1-235ENST00000537033 RPUSD2Q8IZ73 545 aaKnown RBP16.23■□□□□ 0.19
SYNE1-235ENST00000537033 HERVK_113Q902F9 699 aa16.23■□□□□ 0.19
SYNE1-235ENST00000537033 ZNF576Q9H609 170 aa16.23■□□□□ 0.19
SYNE1-235ENST00000537033 VAT1LQ9HCJ6 419 aa16.23■□□□□ 0.19
SYNE1-235ENST00000537033 U3KPZ7 1027 aaPredicted RBP16.23■□□□□ 0.19
SYNE1-235ENST00000537033 SCN10AQ9Y5Y9 1956 aa16.23■□□□□ 0.19
SYNE1-235ENST00000537033 UMODL1Q5DID0 1318 aa16.22■□□□□ 0.19
SYNE1-235ENST00000537033 ERICH2A1L162 156 aa16.22■□□□□ 0.19
SYNE1-235ENST00000537033 GSPT1P15170 499 aaKnown RBP16.22■□□□□ 0.19
SYNE1-235ENST00000537033 PDE4AP27815 886 aa16.22■□□□□ 0.19
SYNE1-235ENST00000537033 RAB30Q15771 203 aa16.22■□□□□ 0.19
SYNE1-235ENST00000537033 STXBP2Q15833 593 aa16.22■□□□□ 0.19
SYNE1-235ENST00000537033 RALYLQ86SE5 291 aaKnown RBP16.22■□□□□ 0.19
SYNE1-235ENST00000537033 SYTL5Q8TDW5 730 aaPredicted RBP16.22■□□□□ 0.19
SYNE1-235ENST00000537033 IWS1Q96ST2 819 aa16.22■□□□□ 0.19
SYNE1-235ENST00000537033 RMDN3Q96TC7 470 aa16.22■□□□□ 0.19
SYNE1-235ENST00000537033 AMNQ9BXJ7 453 aa16.22■□□□□ 0.19
SYNE1-235ENST00000537033 PBX4Q9BYU1 374 aa16.22■□□□□ 0.19
SYNE1-235ENST00000537033 JMJD4Q9H9V9 463 aa16.22■□□□□ 0.19
SYNE1-235ENST00000537033 TRMT13Q9NUP7 481 aaKnown RBP16.22■□□□□ 0.19
SYNE1-235ENST00000537033 MSRAQ9UJ68 235 aa16.22■□□□□ 0.19
SYNE1-235ENST00000537033 GBF1Q92538 1859 aa16.22■□□□□ 0.19
SYNE1-235ENST00000537033 TANC1Q9C0D5 1861 aa16.21■□□□□ 0.19
SYNE1-235ENST00000537033 A6NJR5 290 aa16.21■□□□□ 0.19
SYNE1-235ENST00000537033 GRIN2CQ14957 1233 aa16.21■□□□□ 0.19
SYNE1-235ENST00000537033 ARHGEF16Q5VV41 709 aa16.21■□□□□ 0.19
SYNE1-235ENST00000537033 NFRKBQ6P4R8 1299 aa16.21■□□□□ 0.19
SYNE1-235ENST00000537033 SEPT14Q6ZU15 432 aa16.21■□□□□ 0.19
SYNE1-235ENST00000537033 OTOP2Q7RTS6 562 aa16.21■□□□□ 0.19
SYNE1-235ENST00000537033 COPS5Q92905 334 aa16.21■□□□□ 0.19
SYNE1-235ENST00000537033 WNT8AQ9H1J5 351 aa16.21■□□□□ 0.19
SYNE1-235ENST00000537033 IL25Q9H293 177 aa16.21■□□□□ 0.19
SYNE1-235ENST00000537033 NOD1Q9Y239 953 aa16.21■□□□□ 0.19
SYNE1-235ENST00000537033 GRXCR1A8MXD5 290 aa16.2■□□□□ 0.18
SYNE1-235ENST00000537033 KLRF2D3W0D1 207 aa16.2■□□□□ 0.18
SYNE1-235ENST00000537033 CFBP00751 764 aa16.2■□□□□ 0.18
SYNE1-235ENST00000537033 GH1P01241 217 aa16.2■□□□□ 0.18
SYNE1-235ENST00000537033 PFKMP08237 780 aa16.2■□□□□ 0.18
SYNE1-235ENST00000537033 CYP2C9P11712 490 aa16.2■□□□□ 0.18
SYNE1-235ENST00000537033 PTPN11Q06124 597 aaPredicted RBP16.2■□□□□ 0.18
SYNE1-235ENST00000537033 TRAF1Q13077 416 aa16.2■□□□□ 0.18
SYNE1-235ENST00000537033 SART3Q15020 963 aaKnown RBP16.2■□□□□ 0.18
SYNE1-235ENST00000537033 NBPF20Q3BBV1 942 aa16.2■□□□□ 0.18
SYNE1-235ENST00000537033 TAAR1Q96RJ0 339 aa16.2■□□□□ 0.18
SYNE1-235ENST00000537033 GAS2L1Q99501 681 aaPredicted RBP16.2■□□□□ 0.18
SYNE1-235ENST00000537033 COL20A1Q9P218 1284 aa16.2■□□□□ 0.18
SYNE1-235ENST00000537033 ZBBXA8MT70 800 aa16.19■□□□□ 0.18
SYNE1-235ENST00000537033 ZBTB5O15062 677 aa16.19■□□□□ 0.18
SYNE1-235ENST00000537033 ARIH2O95376 493 aa16.19■□□□□ 0.18
SYNE1-235ENST00000537033 EIF2AK2P19525 551 aaKnown RBP16.19■□□□□ 0.18
SYNE1-235ENST00000537033 CHMLP26374 656 aa16.19■□□□□ 0.18
SYNE1-235ENST00000537033 PBX2P40425 430 aa16.19■□□□□ 0.18
SYNE1-235ENST00000537033 CHMP4BP1P59074 171 aa16.19■□□□□ 0.18
SYNE1-235ENST00000537033 SEC23AQ15436 765 aa16.19■□□□□ 0.18
SYNE1-235ENST00000537033 CYB5R4Q7L1T6 521 aa16.19■□□□□ 0.18
SYNE1-235ENST00000537033 STAG2Q8N3U4 1231 aa16.19■□□□□ 0.18
SYNE1-235ENST00000537033 TBC1D5Q92609 795 aa16.19■□□□□ 0.18
SYNE1-235ENST00000537033 SCLYQ96I15 445 aa16.19■□□□□ 0.18
SYNE1-235ENST00000537033 CXXC1Q9P0U4 656 aaPredicted RBP16.19■□□□□ 0.18
SYNE1-235ENST00000537033 SLC4A7Q9Y6M7 1214 aa16.19■□□□□ 0.18
SYNE1-235ENST00000537033 IFIT3O14879 490 aaKnown RBP16.18■□□□□ 0.18
SYNE1-235ENST00000537033 MMP3P08254 477 aa16.18■□□□□ 0.18
SYNE1-235ENST00000537033 ACTN1P12814 892 aa16.18■□□□□ 0.18
SYNE1-235ENST00000537033 RFC2P35250 354 aa16.18■□□□□ 0.18
SYNE1-235ENST00000537033 BFSP2Q13515 415 aa16.18■□□□□ 0.18
SYNE1-235ENST00000537033 CCDC62Q6P9F0 684 aa16.18■□□□□ 0.18
SYNE1-235ENST00000537033 CHST3Q7LGC8 479 aa16.18■□□□□ 0.18
SYNE1-235ENST00000537033 CCDC155Q8N6L0 562 aa16.18■□□□□ 0.18
SYNE1-235ENST00000537033 RETREG2Q8NC44 543 aa16.18■□□□□ 0.18
SYNE1-235ENST00000537033 NCOA7Q8NI08 942 aa16.18■□□□□ 0.18
SYNE1-235ENST00000537033 AFG1LQ8WV93 481 aa16.18■□□□□ 0.18
SYNE1-235ENST00000537033 SLC28A3Q9HAS3 691 aa16.18■□□□□ 0.18
SYNE1-235ENST00000537033 PXMP2Q9NR77 195 aa16.18■□□□□ 0.18
SYNE1-235ENST00000537033 MAP3K20Q9NYL2 800 aaKnown RBP16.18■□□□□ 0.18
SYNE1-235ENST00000537033 MAD2L2Q9UI95 211 aa16.18■□□□□ 0.18
SYNE1-235ENST00000537033 PCDHA1Q9Y5I3 950 aa16.18■□□□□ 0.18
SYNE1-235ENST00000537033 MRVI1Q9Y6F6 885 aa16.18■□□□□ 0.18
SYNE1-235ENST00000537033 PITPNM1O00562 1244 aa16.17■□□□□ 0.18
SYNE1-235ENST00000537033 EIF3JO75822 258 aaKnown RBP16.17■□□□□ 0.18
SYNE1-235ENST00000537033 CYP21A2P08686 494 aa16.17■□□□□ 0.18
SYNE1-235ENST00000537033 CASTP20810 708 aaKnown RBP16.17■□□□□ 0.18
SYNE1-235ENST00000537033 HSD17B4P51659 736 aa16.17■□□□□ 0.18
SYNE1-235ENST00000537033 IRX6P78412 446 aaPredicted RBP16.17■□□□□ 0.18
SYNE1-235ENST00000537033 ARHGAP1Q07960 439 aa16.17■□□□□ 0.18
SYNE1-235ENST00000537033 GRM4Q14833 912 aa16.17■□□□□ 0.18
SYNE1-235ENST00000537033 WTAPQ15007 396 aa16.17■□□□□ 0.18
SYNE1-235ENST00000537033 LY6KQ17RY6 165 aa16.17■□□□□ 0.18
SYNE1-235ENST00000537033 DEFB128Q7Z7B8 93 aa16.17■□□□□ 0.18
SYNE1-235ENST00000537033 HOMER1Q86YM7 354 aa16.17■□□□□ 0.18
SYNE1-235ENST00000537033 SAMD3Q8N6K7 520 aa16.17■□□□□ 0.18
SYNE1-235ENST00000537033 COL25A1Q9BXS0 654 aaPredicted RBP16.17■□□□□ 0.18
SYNE1-235ENST00000537033 SCN5AQ14524 2016 aa16.17■□□□□ 0.18
SYNE1-235ENST00000537033 UNC80Q8N2C7 3258 aa16.17■□□□□ 0.18
SYNE1-235ENST00000537033 CDH23Q9H251 3354 aa16.17■□□□□ 0.18
SYNE1-235ENST00000537033 MYH7BA7E2Y1 1941 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms