RNA–Protein interactions for RNA: ENST00000535290.5

CLIP1-206, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 665 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-206ENST00000535290 CHMP4BP1P59074 171 aa9.94□□□□□ -0.82
CLIP1-206ENST00000535290 PTPN11Q06124 597 aaPredicted RBP9.94□□□□□ -0.82
CLIP1-206ENST00000535290 GPM6BQ13491 265 aa9.94□□□□□ -0.82
CLIP1-206ENST00000535290 CTC1Q2NKJ3 1217 aa9.94□□□□□ -0.82
CLIP1-206ENST00000535290 LRRC8DQ7L1W4 858 aa9.94□□□□□ -0.82
CLIP1-206ENST00000535290 FAM9BQ8IZU0 186 aa9.94□□□□□ -0.82
CLIP1-206ENST00000535290 OR6J1Q8NGC5 347 aa9.94□□□□□ -0.82
CLIP1-206ENST00000535290 CAGE1Q8TC20 777 aa9.94□□□□□ -0.82
CLIP1-206ENST00000535290 MORC4Q8TE76 937 aa9.94□□□□□ -0.82
CLIP1-206ENST00000535290 TRERF1Q96PN7 1200 aa9.94□□□□□ -0.82
CLIP1-206ENST00000535290 FSD1Q9BTV5 496 aa9.94□□□□□ -0.82
CLIP1-206ENST00000535290 ATP8A2Q9NTI2 1148 aa9.94□□□□□ -0.82
CLIP1-206ENST00000535290 NYAP2Q9P242 653 aa9.94□□□□□ -0.82
CLIP1-206ENST00000535290 FEM1BQ9UK73 627 aa9.94□□□□□ -0.82
CLIP1-206ENST00000535290 TRPC6Q9Y210 931 aa9.94□□□□□ -0.82
CLIP1-206ENST00000535290 EP300Q09472 2414 aaPredicted RBP9.94□□□□□ -0.82
CLIP1-206ENST00000535290 DCHS1Q96JQ0 3298 aa9.94□□□□□ -0.82
CLIP1-206ENST00000535290 NAV1Q8NEY1 1877 aa9.93□□□□□ -0.82
CLIP1-206ENST00000535290 PRR23AA6NEV1 266 aa9.93□□□□□ -0.82
CLIP1-206ENST00000535290 MBD4O95243 580 aa9.93□□□□□ -0.82
CLIP1-206ENST00000535290 HTRA4P83105 476 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-206ENST00000535290 IKBKEQ14164 716 aa9.93□□□□□ -0.82
CLIP1-206ENST00000535290 MUM1L1Q5H9M0 696 aa9.93□□□□□ -0.82
CLIP1-206ENST00000535290 GDF6Q6KF10 455 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-206ENST00000535290 SSH3Q8TE77 659 aa9.93□□□□□ -0.82
CLIP1-206ENST00000535290 IRF2BPLQ9H1B7 796 aa9.93□□□□□ -0.82
CLIP1-206ENST00000535290 CYP39A1Q9NYL5 469 aa9.93□□□□□ -0.82
CLIP1-206ENST00000535290 CLIP2Q9UDT6 1046 aa9.93□□□□□ -0.82
CLIP1-206ENST00000535290 TNNQ9UQP3 1299 aa9.93□□□□□ -0.82
CLIP1-206ENST00000535290 SCN10AQ9Y5Y9 1956 aa9.93□□□□□ -0.82
CLIP1-206ENST00000535290 RBM47A0AV96 593 aaKnown RBP9.92□□□□□ -0.82
CLIP1-206ENST00000535290 A6NJR5 290 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 TBX10O75333 385 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 CHGBP05060 677 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 CKBP12277 381 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 ALAS1P13196 640 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 RASA1P20936 1047 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 GTF2F1P35269 517 aaKnown RBP eCLIP9.92□□□□□ -0.82
CLIP1-206ENST00000535290 HYAL1Q12794 435 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 SMAD4Q13485 552 aaKnown RBP9.92□□□□□ -0.82
CLIP1-206ENST00000535290 MBTPS1Q14703 1052 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 CTR9Q6PD62 1173 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 TRAF7Q6Q0C0 670 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 TMEM192Q8IY95 271 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 MYOCDQ8IZQ8 938 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 STK11IPQ8N1F8 1099 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 CCDC155Q8N6L0 562 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 COPS5Q92905 334 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 ASIC4Q96FT7 647 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 NOP58Q9Y2X3 529 aaKnown RBP9.92□□□□□ -0.82
CLIP1-206ENST00000535290 COL4A6Q14031 1691 aa9.92□□□□□ -0.82
CLIP1-206ENST00000535290 MED19A0JLT2 244 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-206ENST00000535290 TMEM232C9JQI7 657 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 GOLIM4O00461 696 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 LINC01565O15544 149 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 NCK2O43639 380 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 KPNA6O60684 536 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 EFCAB14O75071 495 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 PARNO95453 639 aaKnown RBP9.91□□□□□ -0.82
CLIP1-206ENST00000535290 SNAP25P60880 206 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 ATP8B2P98198 1209 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 RBL2Q08999 1139 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 SIGLEC14Q08ET2 396 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 TTF1Q15361 905 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-206ENST00000535290 TKFCQ3LXA3 575 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 BRDTQ58F21 947 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-206ENST00000535290 NSMFQ6X4W1 530 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 AACSQ86V21 672 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 FBXO11Q86XK2 927 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 AMOTL1Q8IY63 956 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 LRRC47Q8N1G4 583 aaKnown RBP9.91□□□□□ -0.82
CLIP1-206ENST00000535290 ARHGAP45Q92619 1136 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 CHMP4CQ96CF2 233 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 SAMD11Q96NU1 681 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 TANC1Q9C0D5 1861 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 SIP14410 1827 aa9.91□□□□□ -0.82
CLIP1-206ENST00000535290 MYO15AQ9UKN7 3530 aa9.9□□□□□ -0.82
CLIP1-206ENST00000535290 TRIP12Q14669 1992 aaPredicted RBP9.9□□□□□ -0.82
CLIP1-206ENST00000535290 IGKV6D-41A0A0C4DH26 115 aa9.9□□□□□ -0.82
CLIP1-206ENST00000535290 LOC730098B7Z3J9 87 aa9.9□□□□□ -0.82
CLIP1-206ENST00000535290 BMP3P12645 472 aa9.9□□□□□ -0.82
CLIP1-206ENST00000535290 NBL1P41271 181 aa9.9□□□□□ -0.82
CLIP1-206ENST00000535290 SLFN13Q68D06 897 aa9.9□□□□□ -0.82
CLIP1-206ENST00000535290 SESTD1Q86VW0 696 aa9.9□□□□□ -0.82
CLIP1-206ENST00000535290 RPAP2Q8IXW5 612 aaPredicted RBP9.9□□□□□ -0.82
CLIP1-206ENST00000535290 DBF4BQ8NFT6 615 aa9.9□□□□□ -0.82
CLIP1-206ENST00000535290 WNT8BQ93098 351 aa9.9□□□□□ -0.82
CLIP1-206ENST00000535290 MKL1Q969V6 931 aa9.9□□□□□ -0.82
CLIP1-206ENST00000535290 IGFLR1Q9H665 355 aa9.9□□□□□ -0.82
CLIP1-206ENST00000535290 CD207Q9UJ71 328 aa9.9□□□□□ -0.82
CLIP1-206ENST00000535290 ACACBO00763 2458 aa9.9□□□□□ -0.83
CLIP1-206ENST00000535290 PLXNA3P51805 1871 aa9.89□□□□□ -0.83
CLIP1-206ENST00000535290 ZBED9Q6R2W3 1325 aa9.89□□□□□ -0.83
CLIP1-206ENST00000535290 GRM6O15303 877 aa9.89□□□□□ -0.83
CLIP1-206ENST00000535290 KDM4AO75164 1064 aa9.89□□□□□ -0.83
CLIP1-206ENST00000535290 LGR5O75473 907 aa9.89□□□□□ -0.83
CLIP1-206ENST00000535290 PDGFBP01127 241 aaPredicted RBP9.89□□□□□ -0.83
CLIP1-206ENST00000535290 AMHP03971 560 aa9.89□□□□□ -0.83
CLIP1-206ENST00000535290 FDX1P10109 184 aa9.89□□□□□ -0.83
CLIP1-206ENST00000535290 TRIM27P14373 513 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms