RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 AMPD2Q01433 879 aa7.75□□□□□ -1.17
SYNE1-232ENST00000535081 RGL3Q3MIN7 710 aa7.75□□□□□ -1.17
SYNE1-232ENST00000535081 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.75□□□□□ -1.17
SYNE1-232ENST00000535081 SIT1Q9Y3P8 196 aa7.75□□□□□ -1.17
SYNE1-232ENST00000535081 SLC12A7Q9Y666 1083 aa7.75□□□□□ -1.17
SYNE1-232ENST00000535081 EPHX1P07099 455 aa7.74□□□□□ -1.17
SYNE1-232ENST00000535081 THBS2P35442 1172 aa7.74□□□□□ -1.17
SYNE1-232ENST00000535081 RBM10P98175 930 aaKnown RBP7.74□□□□□ -1.17
SYNE1-232ENST00000535081 GRB10Q13322 594 aa7.74□□□□□ -1.17
SYNE1-232ENST00000535081 ADAT2Q7Z6V5 191 aaKnown RBP7.74□□□□□ -1.17
SYNE1-232ENST00000535081 GZF1Q9H116 711 aaPredicted RBP7.74□□□□□ -1.17
SYNE1-232ENST00000535081 PHAXQ9H814 394 aaKnown RBP7.74□□□□□ -1.17
SYNE1-232ENST00000535081 C7orf72A4D263 438 aa7.73□□□□□ -1.17
SYNE1-232ENST00000535081 NPHS1O60500 1241 aa7.73□□□□□ -1.17
SYNE1-232ENST00000535081 PPM1BO75688 479 aa7.73□□□□□ -1.17
SYNE1-232ENST00000535081 NTRK1P04629 796 aa7.73□□□□□ -1.17
SYNE1-232ENST00000535081 RPL13P26373 211 aaKnown RBP7.73□□□□□ -1.17
SYNE1-232ENST00000535081 ETV3LQ6ZN32 361 aa7.73□□□□□ -1.17
SYNE1-232ENST00000535081 CCDC81Q6ZN84 652 aa7.73□□□□□ -1.17
SYNE1-232ENST00000535081 LGI4Q8N135 537 aa7.73□□□□□ -1.17
SYNE1-232ENST00000535081 FGD4Q96M96 766 aa7.73□□□□□ -1.17
SYNE1-232ENST00000535081 C11orf84Q9BUA3 381 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-232ENST00000535081 PCDH18Q9HCL0 1135 aa7.73□□□□□ -1.17
SYNE1-232ENST00000535081 SRRDQ9UH36 339 aa7.73□□□□□ -1.17
SYNE1-232ENST00000535081 PCDHB10Q9UN67 800 aa7.73□□□□□ -1.17
SYNE1-232ENST00000535081 FUCA1P04066 466 aa7.72□□□□□ -1.17
SYNE1-232ENST00000535081 FANCCQ00597 558 aa7.72□□□□□ -1.17
SYNE1-232ENST00000535081 KIAA2012Q0VF49 1180 aa7.72□□□□□ -1.17
SYNE1-232ENST00000535081 FAM26FQ5R3K3 315 aa7.72□□□□□ -1.17
SYNE1-232ENST00000535081 DCP2Q8IU60 420 aaKnown RBP7.72□□□□□ -1.17
SYNE1-232ENST00000535081 ARHGEF39Q8N4T4 335 aa7.72□□□□□ -1.17
SYNE1-232ENST00000535081 CRBNQ96SW2 442 aa7.72□□□□□ -1.17
SYNE1-232ENST00000535081 SYT3Q9BQG1 590 aa7.72□□□□□ -1.17
SYNE1-232ENST00000535081 INVSQ9Y283 1065 aa7.72□□□□□ -1.17
SYNE1-232ENST00000535081 SLC7A5Q01650 507 aa7.71□□□□□ -1.18
SYNE1-232ENST00000535081 BORAQ6PGQ7 559 aa7.71□□□□□ -1.18
SYNE1-232ENST00000535081 KYQ8NBH2 561 aa7.71□□□□□ -1.18
SYNE1-232ENST00000535081 SLC16A11Q8NCK7 471 aa7.71□□□□□ -1.18
SYNE1-232ENST00000535081 RCC1LQ96I51 464 aaKnown RBP7.71□□□□□ -1.18
SYNE1-232ENST00000535081 METTL5Q9NRN9 209 aaKnown RBP7.71□□□□□ -1.18
SYNE1-232ENST00000535081 MROH6A6NGR9 719 aa7.7□□□□□ -1.18
SYNE1-232ENST00000535081 COL9A2Q14055 689 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-232ENST00000535081 FAM124AQ86V42 546 aa7.7□□□□□ -1.18
SYNE1-232ENST00000535081 C19orf47Q8N9M1 422 aaKnown RBP7.7□□□□□ -1.18
SYNE1-232ENST00000535081 CHST13Q8NET6 341 aa7.7□□□□□ -1.18
SYNE1-232ENST00000535081 AP5M1Q9H0R1 490 aa7.7□□□□□ -1.18
SYNE1-232ENST00000535081 SUGT1Q9Y2Z0 365 aa7.7□□□□□ -1.18
SYNE1-232ENST00000535081 FSHBP01225 129 aa7.69□□□□□ -1.18
SYNE1-232ENST00000535081 MIB1Q86YT6 1006 aa7.69□□□□□ -1.18
SYNE1-232ENST00000535081 FAM26EQ8N5C1 309 aa7.69□□□□□ -1.18
SYNE1-232ENST00000535081 PLEKHO2Q8TD55 490 aa7.69□□□□□ -1.18
SYNE1-232ENST00000535081 KLHL6Q8WZ60 621 aa7.69□□□□□ -1.18
SYNE1-232ENST00000535081 DVL3Q92997 716 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-232ENST00000535081 SSBP3Q9BWW4 388 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-232ENST00000535081 GINM1Q9NU53 330 aa7.69□□□□□ -1.18
SYNE1-232ENST00000535081 MARCH2Q9P0N8 246 aa7.69□□□□□ -1.18
SYNE1-232ENST00000535081 CLEC1BQ9P126 229 aa7.69□□□□□ -1.18
SYNE1-232ENST00000535081 A0A1W2PQH9 124 aa7.68□□□□□ -1.18
SYNE1-232ENST00000535081 SUV39H1O43463 412 aa7.68□□□□□ -1.18
SYNE1-232ENST00000535081 EIF6P56537 245 aaKnown RBP7.68□□□□□ -1.18
SYNE1-232ENST00000535081 RACK1P63244 317 aaKnown RBP7.68□□□□□ -1.18
SYNE1-232ENST00000535081 C9orf131Q5VYM1 1079 aa7.68□□□□□ -1.18
SYNE1-232ENST00000535081 MBLAC2Q68D91 279 aa7.68□□□□□ -1.18
SYNE1-232ENST00000535081 MCTP2Q6DN12 878 aa7.68□□□□□ -1.18
SYNE1-232ENST00000535081 CD300LDQ6UXZ3 194 aa7.68□□□□□ -1.18
SYNE1-232ENST00000535081 ZC3H18Q86VM9 953 aaKnown RBP7.68□□□□□ -1.18
SYNE1-232ENST00000535081 TTLL6Q8N841 843 aa7.68□□□□□ -1.18
SYNE1-232ENST00000535081 BACH2Q9BYV9 841 aa7.68□□□□□ -1.18
SYNE1-232ENST00000535081 ZNF536O15090 1300 aa7.68□□□□□ -1.18
SYNE1-232ENST00000535081 ITGA1P56199 1179 aa7.67□□□□□ -1.18
SYNE1-232ENST00000535081 GLB1LQ6UWU2 654 aa7.67□□□□□ -1.18
SYNE1-232ENST00000535081 TXNDC5Q8NBS9 432 aaKnown RBP7.67□□□□□ -1.18
SYNE1-232ENST00000535081 MMP19Q99542 508 aa7.67□□□□□ -1.18
SYNE1-232ENST00000535081 ST6GALNAC2Q9UJ37 374 aa7.67□□□□□ -1.18
SYNE1-232ENST00000535081 DDX41Q9UJV9 622 aaKnown RBP7.67□□□□□ -1.18
SYNE1-232ENST00000535081 SGSM2O43147 1006 aa7.66□□□□□ -1.18
SYNE1-232ENST00000535081 PLS3P13797 630 aa7.66□□□□□ -1.18
SYNE1-232ENST00000535081 GIPRP48546 466 aa7.66□□□□□ -1.18
SYNE1-232ENST00000535081 PRR31Q5SQ13 230 aa7.66□□□□□ -1.18
SYNE1-232ENST00000535081 STK32CQ86UX6 486 aa7.66□□□□□ -1.18
SYNE1-232ENST00000535081 OR6P1Q8NGX9 317 aa7.66□□□□□ -1.18
SYNE1-232ENST00000535081 SEC14L1Q92503 715 aa7.66□□□□□ -1.18
SYNE1-232ENST00000535081 DPF3Q92784 378 aa7.66□□□□□ -1.18
SYNE1-232ENST00000535081 COPS5Q92905 334 aa7.66□□□□□ -1.18
SYNE1-232ENST00000535081 THBDP07204 575 aa7.65□□□□□ -1.18
SYNE1-232ENST00000535081 C6P13671 934 aa7.65□□□□□ -1.18
SYNE1-232ENST00000535081 ZNF16P17020 682 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-232ENST00000535081 SOX9P48436 509 aa7.65□□□□□ -1.18
SYNE1-232ENST00000535081 SCRN1Q12765 414 aa7.65□□□□□ -1.18
SYNE1-232ENST00000535081 LIMS2Q7Z4I7 341 aa7.65□□□□□ -1.18
SYNE1-232ENST00000535081 TEX2Q8IWB9 1127 aa7.65□□□□□ -1.18
SYNE1-232ENST00000535081 ZNF513Q8N8E2 541 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-232ENST00000535081 LCORQ96JN0 433 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-232ENST00000535081 SORCS2Q96PQ0 1159 aa7.65□□□□□ -1.18
SYNE1-232ENST00000535081 AKT3Q9Y243 479 aa7.65□□□□□ -1.18
SYNE1-232ENST00000535081 EFR3BQ9Y2G0 817 aa7.65□□□□□ -1.18
SYNE1-232ENST00000535081 DDX3XO00571 662 aaKnown RBP eCLIP7.64□□□□□ -1.19
SYNE1-232ENST00000535081 PAK2Q13177 524 aa7.64□□□□□ -1.19
SYNE1-232ENST00000535081 FAM126BQ8IXS8 530 aa7.64□□□□□ -1.19
SYNE1-232ENST00000535081 KISS1RQ969F8 398 aaPredicted RBP7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms