RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 SMPD1P17405 629 aa14.99□□□□□ -0.01
VPS28-216ENST00000533806 HOXA13P31271 388 aaPredicted RBP14.99□□□□□ -0.01
VPS28-216ENST00000533806 METAP2P50579 478 aaKnown RBP eCLIP14.99□□□□□ -0.01
VPS28-216ENST00000533806 IRX5P78411 483 aaPredicted RBP14.99□□□□□ -0.01
VPS28-216ENST00000533806 TNFAIP2Q03169 654 aa14.99□□□□□ -0.01
VPS28-216ENST00000533806 PHF24Q9UPV7 400 aa14.99□□□□□ -0.01
VPS28-216ENST00000533806 Q9Y3F1 56 aa14.99□□□□□ -0.01
VPS28-216ENST00000533806 V9GY48 417 aaPredicted RBP14.99□□□□□ -0.01
VPS28-216ENST00000533806 FRMPD3Q5JV73 1810 aa14.99□□□□□ -0.01
VPS28-216ENST00000533806 FRMPD4Q14CM0 1322 aa14.98□□□□□ -0.01
VPS28-216ENST00000533806 LRRC37A2A6NM11 1700 aa14.98□□□□□ -0.01
VPS28-216ENST00000533806 CCDC196A0A1B0GTZ2 297 aa14.98□□□□□ -0.01
VPS28-216ENST00000533806 MYADML2A6NDP7 307 aa14.98□□□□□ -0.01
VPS28-216ENST00000533806 B4DLN1 442 aa14.98□□□□□ -0.01
VPS28-216ENST00000533806 NR3C2P08235 984 aa14.98□□□□□ -0.01
VPS28-216ENST00000533806 PTGS1P23219 599 aa14.98□□□□□ -0.01
VPS28-216ENST00000533806 MRPL12P52815 198 aaKnown RBP14.98□□□□□ -0.01
VPS28-216ENST00000533806 PDE4DQ08499 809 aa14.98□□□□□ -0.01
VPS28-216ENST00000533806 DUSP28Q4G0W2 176 aa14.98□□□□□ -0.01
VPS28-216ENST00000533806 WWC2Q6AWC2 1192 aa14.98□□□□□ -0.01
VPS28-216ENST00000533806 TYW1BQ6NUM6 668 aa14.98□□□□□ -0.01
VPS28-216ENST00000533806 RNF180Q86T96 592 aa14.98□□□□□ -0.01
VPS28-216ENST00000533806 VSIG10LQ86VR7 867 aa14.98□□□□□ -0.01
VPS28-216ENST00000533806 PDCD2LQ9BRP1 358 aa14.98□□□□□ -0.01
VPS28-216ENST00000533806 TSEN34Q9BSV6 310 aaKnown RBP14.98□□□□□ -0.01
VPS28-216ENST00000533806 PDRG1Q9NUG6 133 aa14.98□□□□□ -0.01
VPS28-216ENST00000533806 MCM3APO60318 1980 aa14.97□□□□□ -0.01
VPS28-216ENST00000533806 KBTBD13C9JR72 458 aa14.97□□□□□ -0.01
VPS28-216ENST00000533806 RGS20O76081 388 aa14.97□□□□□ -0.01
VPS28-216ENST00000533806 IFNAR1P17181 557 aa14.97□□□□□ -0.01
VPS28-216ENST00000533806 EIF2AK2P19525 551 aaKnown RBP14.97□□□□□ -0.01
VPS28-216ENST00000533806 SNX17Q15036 470 aa14.97□□□□□ -0.01
VPS28-216ENST00000533806 PKN1Q16512 942 aa14.97□□□□□ -0.01
VPS28-216ENST00000533806 ARHGEF16Q5VV41 709 aa14.97□□□□□ -0.01
VPS28-216ENST00000533806 CCDC62Q6P9F0 684 aa14.97□□□□□ -0.01
VPS28-216ENST00000533806 USP17L6PQ6QN14 398 aa14.97□□□□□ -0.01
VPS28-216ENST00000533806 GPKOWQ92917 476 aaPredicted RBP eCLIP14.97□□□□□ -0.01
VPS28-216ENST00000533806 MPHOSPH6Q99547 160 aaKnown RBP14.97□□□□□ -0.01
VPS28-216ENST00000533806 SENP6Q9GZR1 1112 aaPredicted RBP14.97□□□□□ -0.01
VPS28-216ENST00000533806 hCG_1984214I3L0E3 225 aa14.96□□□□□ -0.01
VPS28-216ENST00000533806 STXBP3O00186 592 aa14.96□□□□□ -0.01
VPS28-216ENST00000533806 PRPF3O43395 683 aaKnown RBP14.96□□□□□ -0.01
VPS28-216ENST00000533806 EIF3JO75822 258 aaKnown RBP14.96□□□□□ -0.01
VPS28-216ENST00000533806 PGM5Q15124 567 aa14.96□□□□□ -0.01
VPS28-216ENST00000533806 STXBP2Q15833 593 aa14.96□□□□□ -0.01
VPS28-216ENST00000533806 KCNA10Q16322 511 aa14.96□□□□□ -0.01
VPS28-216ENST00000533806 PFKFB3Q16875 520 aaPredicted RBP14.96□□□□□ -0.01
VPS28-216ENST00000533806 LRRC26Q2I0M4 334 aa14.96□□□□□ -0.01
VPS28-216ENST00000533806 C1orf53Q5VUE5 145 aa14.96□□□□□ -0.01
VPS28-216ENST00000533806 TEX2Q8IWB9 1127 aa14.96□□□□□ -0.01
VPS28-216ENST00000533806 ZNF713Q8N859 430 aaPredicted RBP14.96□□□□□ -0.01
VPS28-216ENST00000533806 IL31RAQ8NI17 732 aa14.96□□□□□ -0.01
VPS28-216ENST00000533806 SCFD2Q8WU76 684 aa14.96□□□□□ -0.01
VPS28-216ENST00000533806 KIF2CQ99661 725 aa14.96□□□□□ -0.01
VPS28-216ENST00000533806 LARP6Q9BRS8 491 aaKnown RBP14.96□□□□□ -0.01
VPS28-216ENST00000533806 WDR11Q9BZH6 1224 aa14.96□□□□□ -0.01
VPS28-216ENST00000533806 PSTPIP2Q9H939 334 aa14.96□□□□□ -0.01
VPS28-216ENST00000533806 NCOA5Q9HCD5 579 aaKnown RBP14.96□□□□□ -0.01
VPS28-216ENST00000533806 BARHL2Q9NY43 387 aa14.96□□□□□ -0.01
VPS28-216ENST00000533806 CEP290O15078 2479 aa14.95□□□□□ -0.02
VPS28-216ENST00000533806 RANBP2P49792 3224 aaKnown RBP14.95□□□□□ -0.02
VPS28-216ENST00000533806 MOXD2PA6NHM9 499 aa14.95□□□□□ -0.02
VPS28-216ENST00000533806 ARIH2O95376 493 aa14.95□□□□□ -0.02
VPS28-216ENST00000533806 ACLYP53396 1101 aa14.95□□□□□ -0.02
VPS28-216ENST00000533806 CCT2P78371 535 aaKnown RBP14.95□□□□□ -0.02
VPS28-216ENST00000533806 PRPF38BQ5VTL8 546 aaKnown RBP14.95□□□□□ -0.02
VPS28-216ENST00000533806 PPP1R18Q6NYC8 613 aa14.95□□□□□ -0.02
VPS28-216ENST00000533806 SLC39A5Q6ZMH5 540 aa14.95□□□□□ -0.02
VPS28-216ENST00000533806 HEATR3Q7Z4Q2 680 aa14.95□□□□□ -0.02
VPS28-216ENST00000533806 TLK2Q86UE8 772 aa14.95□□□□□ -0.02
VPS28-216ENST00000533806 FCHSD1Q86WN1 690 aa14.95□□□□□ -0.02
VPS28-216ENST00000533806 DPF3Q92784 378 aa14.95□□□□□ -0.02
VPS28-216ENST00000533806 NAP1L2Q9ULW6 460 aaPredicted RBP14.95□□□□□ -0.02
VPS28-216ENST00000533806 MYH6P13533 1939 aa14.94□□□□□ -0.02
VPS28-216ENST00000533806 A0A1W2PQ45 241 aaPredicted RBP14.94□□□□□ -0.02
VPS28-216ENST00000533806 A0A1W2PQY0 241 aa14.94□□□□□ -0.02
VPS28-216ENST00000533806 NKRFO15226 690 aaKnown RBP eCLIP14.94□□□□□ -0.02
VPS28-216ENST00000533806 DYNC1LI2O43237 492 aaPredicted RBP14.94□□□□□ -0.02
VPS28-216ENST00000533806 C6orf222P0C671 652 aaPredicted RBP14.94□□□□□ -0.02
VPS28-216ENST00000533806 AK2P54819 239 aa14.94□□□□□ -0.02
VPS28-216ENST00000533806 MRPS9P82933 396 aaKnown RBP14.94□□□□□ -0.02
VPS28-216ENST00000533806 PHKBQ93100 1093 aa14.94□□□□□ -0.02
VPS28-216ENST00000533806 RNF26Q9BY78 433 aaPredicted RBP14.94□□□□□ -0.02
VPS28-216ENST00000533806 RIC8AQ9NPQ8 531 aa14.94□□□□□ -0.02
VPS28-216ENST00000533806 TPCN1Q9ULQ1 816 aa14.94□□□□□ -0.02
VPS28-216ENST00000533806 H0YGN5 161 aa14.93□□□□□ -0.02
VPS28-216ENST00000533806 EVI5O60447 810 aa14.93□□□□□ -0.02
VPS28-216ENST00000533806 MYCNP04198 464 aaPredicted RBP14.93□□□□□ -0.02
VPS28-216ENST00000533806 ASGR1P07306 291 aa14.93□□□□□ -0.02
VPS28-216ENST00000533806 TXNP10599 105 aaKnown RBP14.93□□□□□ -0.02
VPS28-216ENST00000533806 SCG2P13521 617 aa14.93□□□□□ -0.02
VPS28-216ENST00000533806 RBM25P49756 843 aaKnown RBP14.93□□□□□ -0.02
VPS28-216ENST00000533806 CLK2P49760 499 aaKnown RBP14.93□□□□□ -0.02
VPS28-216ENST00000533806 BEX3Q00994 111 aa14.93□□□□□ -0.02
VPS28-216ENST00000533806 GNASQ5JWF2 1037 aa14.93□□□□□ -0.02
VPS28-216ENST00000533806 PCSK9Q8NBP7 692 aaKnown RBP14.93□□□□□ -0.02
VPS28-216ENST00000533806 FERMT2Q96AC1 680 aa14.93□□□□□ -0.02
VPS28-216ENST00000533806 INPP4AQ96PE3 977 aaPredicted RBP14.93□□□□□ -0.02
VPS28-216ENST00000533806 SPC25Q9HBM1 224 aa14.93□□□□□ -0.02
VPS28-216ENST00000533806 RBM27Q9P2N5 1060 aaKnown RBP14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms