RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.34■□□□□ 0.37
CPSF1-208ENST00000532560 RBM47A0AV96 593 aaKnown RBP17.34■□□□□ 0.37
CPSF1-208ENST00000532560 PIK3CDO00329 1044 aa17.34■□□□□ 0.37
CPSF1-208ENST00000532560 PGK1P00558 417 aa17.34■□□□□ 0.37
CPSF1-208ENST00000532560 CST5P28325 142 aaPredicted RBP17.34■□□□□ 0.37
CPSF1-208ENST00000532560 ADCYAP1R1P41586 468 aa17.34■□□□□ 0.37
CPSF1-208ENST00000532560 NKX3-2P78367 333 aa17.34■□□□□ 0.37
CPSF1-208ENST00000532560 TNFAIP2Q03169 654 aa17.34■□□□□ 0.37
CPSF1-208ENST00000532560 GJC2Q5T442 439 aaPredicted RBP17.34■□□□□ 0.37
CPSF1-208ENST00000532560 ARHGEF16Q5VV41 709 aa17.34■□□□□ 0.37
CPSF1-208ENST00000532560 IQSEC1Q6DN90 963 aa17.34■□□□□ 0.37
CPSF1-208ENST00000532560 PPP1R18Q6NYC8 613 aa17.34■□□□□ 0.37
CPSF1-208ENST00000532560 HEATR3Q7Z4Q2 680 aa17.34■□□□□ 0.37
CPSF1-208ENST00000532560 RNF180Q86T96 592 aa17.34■□□□□ 0.37
CPSF1-208ENST00000532560 ZNF274Q96GC6 653 aaPredicted RBP17.34■□□□□ 0.37
CPSF1-208ENST00000532560 PDGFCQ9NRA1 345 aa17.34■□□□□ 0.37
CPSF1-208ENST00000532560 GNEQ9Y223 722 aaKnown RBP17.34■□□□□ 0.37
CPSF1-208ENST00000532560 FRMPD4Q14CM0 1322 aa17.33■□□□□ 0.36
CPSF1-208ENST00000532560 SMPD1P17405 629 aa17.33■□□□□ 0.36
CPSF1-208ENST00000532560 EIF2AK2P19525 551 aaKnown RBP17.33■□□□□ 0.36
CPSF1-208ENST00000532560 GJA9P57773 515 aa17.33■□□□□ 0.36
CPSF1-208ENST00000532560 WWC2Q6AWC2 1192 aa17.33■□□□□ 0.36
CPSF1-208ENST00000532560 TEX2Q8IWB9 1127 aa17.33■□□□□ 0.36
CPSF1-208ENST00000532560 KLHDC9Q8NEP7 349 aa17.33■□□□□ 0.36
CPSF1-208ENST00000532560 GPKOWQ92917 476 aaPredicted RBP eCLIP17.33■□□□□ 0.36
CPSF1-208ENST00000532560 CUL5Q93034 780 aa17.33■□□□□ 0.36
CPSF1-208ENST00000532560 PDCD2LQ9BRP1 358 aa17.33■□□□□ 0.36
CPSF1-208ENST00000532560 RBM27Q9P2N5 1060 aaKnown RBP17.33■□□□□ 0.36
CPSF1-208ENST00000532560 V9GY48 417 aaPredicted RBP17.33■□□□□ 0.36
CPSF1-208ENST00000532560 ALPK3Q96L96 1907 aa17.33■□□□□ 0.36
CPSF1-208ENST00000532560 MEIS2O14770 477 aa17.32■□□□□ 0.36
CPSF1-208ENST00000532560 NR3C2P08235 984 aa17.32■□□□□ 0.36
CPSF1-208ENST00000532560 STXBP2Q15833 593 aa17.32■□□□□ 0.36
CPSF1-208ENST00000532560 NTRK3Q16288 839 aa17.32■□□□□ 0.36
CPSF1-208ENST00000532560 DUSP28Q4G0W2 176 aa17.32■□□□□ 0.36
CPSF1-208ENST00000532560 TLK2Q86UE8 772 aa17.32■□□□□ 0.36
CPSF1-208ENST00000532560 SCFD2Q8WU76 684 aa17.32■□□□□ 0.36
CPSF1-208ENST00000532560 TSEN34Q9BSV6 310 aaKnown RBP17.32■□□□□ 0.36
CPSF1-208ENST00000532560 SPC25Q9HBM1 224 aa17.32■□□□□ 0.36
CPSF1-208ENST00000532560 PHF24Q9UPV7 400 aa17.32■□□□□ 0.36
CPSF1-208ENST00000532560 Q9Y3F1 56 aa17.32■□□□□ 0.36
CPSF1-208ENST00000532560 STXBP3O00186 592 aa17.31■□□□□ 0.36
CPSF1-208ENST00000532560 PRPF3O43395 683 aaKnown RBP17.31■□□□□ 0.36
CPSF1-208ENST00000532560 MYCNP04198 464 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-208ENST00000532560 IFNAR1P17181 557 aa17.31■□□□□ 0.36
CPSF1-208ENST00000532560 PGM5Q15124 567 aa17.31■□□□□ 0.36
CPSF1-208ENST00000532560 ANKRD1Q15327 319 aa17.31■□□□□ 0.36
CPSF1-208ENST00000532560 PFKFB3Q16875 520 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-208ENST00000532560 CCSAPQ6IQ19 270 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-208ENST00000532560 USP17L6PQ6QN14 398 aa17.31■□□□□ 0.36
CPSF1-208ENST00000532560 NOL8Q76FK4 1167 aaKnown RBP17.31■□□□□ 0.36
CPSF1-208ENST00000532560 FCHSD1Q86WN1 690 aa17.31■□□□□ 0.36
CPSF1-208ENST00000532560 SMARCC2Q8TAQ2 1214 aa17.31■□□□□ 0.36
CPSF1-208ENST00000532560 RNF26Q9BY78 433 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-208ENST00000532560 WDR11Q9BZH6 1224 aa17.31■□□□□ 0.36
CPSF1-208ENST00000532560 PSTPIP2Q9H939 334 aa17.31■□□□□ 0.36
CPSF1-208ENST00000532560 NCOA5Q9HCD5 579 aaKnown RBP17.31■□□□□ 0.36
CPSF1-208ENST00000532560 BARHL2Q9NY43 387 aa17.31■□□□□ 0.36
CPSF1-208ENST00000532560 KIAA1217Q5T5P2 1943 aa17.31■□□□□ 0.36
CPSF1-208ENST00000532560 MYADML2A6NDP7 307 aa17.3■□□□□ 0.36
CPSF1-208ENST00000532560 NKRFO15226 690 aaKnown RBP eCLIP17.3■□□□□ 0.36
CPSF1-208ENST00000532560 CTAGE5O15320 804 aa17.3■□□□□ 0.36
CPSF1-208ENST00000532560 C6orf222P0C671 652 aaPredicted RBP17.3■□□□□ 0.36
CPSF1-208ENST00000532560 SCG2P13521 617 aa17.3■□□□□ 0.36
CPSF1-208ENST00000532560 NAPAP54920 295 aa17.3■□□□□ 0.36
CPSF1-208ENST00000532560 CCT2P78371 535 aaKnown RBP17.3■□□□□ 0.36
CPSF1-208ENST00000532560 TYW1BQ6NUM6 668 aa17.3■□□□□ 0.36
CPSF1-208ENST00000532560 IL31RAQ8NI17 732 aa17.3■□□□□ 0.36
CPSF1-208ENST00000532560 DPF3Q92784 378 aa17.3■□□□□ 0.36
CPSF1-208ENST00000532560 ANP32EQ9BTT0 268 aa17.3■□□□□ 0.36
CPSF1-208ENST00000532560 SENP6Q9GZR1 1112 aaPredicted RBP17.3■□□□□ 0.36
CPSF1-208ENST00000532560 A0A1W2PQ45 241 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-208ENST00000532560 A0A1W2PQY0 241 aa17.29■□□□□ 0.36
CPSF1-208ENST00000532560 MOXD2PA6NHM9 499 aa17.29■□□□□ 0.36
CPSF1-208ENST00000532560 EIF3JO75822 258 aaKnown RBP17.29■□□□□ 0.36
CPSF1-208ENST00000532560 CCND2P30279 289 aa17.29■□□□□ 0.36
CPSF1-208ENST00000532560 AK2P54819 239 aa17.29■□□□□ 0.36
CPSF1-208ENST00000532560 TTLL4Q14679 1199 aa17.29■□□□□ 0.36
CPSF1-208ENST00000532560 SNX17Q15036 470 aa17.29■□□□□ 0.36
CPSF1-208ENST00000532560 PRPF38BQ5VTL8 546 aaKnown RBP17.29■□□□□ 0.36
CPSF1-208ENST00000532560 VSIG10LQ86VR7 867 aa17.29■□□□□ 0.36
CPSF1-208ENST00000532560 PCSK9Q8NBP7 692 aaKnown RBP17.29■□□□□ 0.36
CPSF1-208ENST00000532560 PHKBQ93100 1093 aa17.29■□□□□ 0.36
CPSF1-208ENST00000532560 LARP6Q9BRS8 491 aaKnown RBP17.29■□□□□ 0.36
CPSF1-208ENST00000532560 AP5M1Q9H0R1 490 aa17.29■□□□□ 0.36
CPSF1-208ENST00000532560 EVI5O60447 810 aa17.28■□□□□ 0.36
CPSF1-208ENST00000532560 AKAP17AQ02040 695 aaKnown RBP17.28■□□□□ 0.36
CPSF1-208ENST00000532560 KCNA10Q16322 511 aa17.28■□□□□ 0.36
CPSF1-208ENST00000532560 PKN1Q16512 942 aa17.28■□□□□ 0.36
CPSF1-208ENST00000532560 FSCN1Q16658 493 aaKnown RBP17.28■□□□□ 0.36
CPSF1-208ENST00000532560 LRRC26Q2I0M4 334 aa17.28■□□□□ 0.36
CPSF1-208ENST00000532560 TMEM63BQ5T3F8 832 aa17.28■□□□□ 0.36
CPSF1-208ENST00000532560 CCDC62Q6P9F0 684 aa17.28■□□□□ 0.36
CPSF1-208ENST00000532560 SEPT14Q6ZU15 432 aa17.28■□□□□ 0.36
CPSF1-208ENST00000532560 GLT8D2Q9H1C3 349 aa17.28■□□□□ 0.36
CPSF1-208ENST00000532560 RIC8AQ9NPQ8 531 aa17.28■□□□□ 0.36
CPSF1-208ENST00000532560 TPCN1Q9ULQ1 816 aa17.28■□□□□ 0.36
CPSF1-208ENST00000532560 ESYT2A0FGR8 921 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 CPLX1O14810 134 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 DYNC1LI2O43237 492 aaPredicted RBP17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms