RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ATP2B3Q16720 1220 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 SEZ6Q53EL9 994 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 GORABQ5T7V8 394 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 PRR5LQ6MZQ0 368 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 CASC1Q6TDU7 716 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 BNC2Q6ZN30 1099 aaPredicted RBP4.97□□□□□ -1.61
CD44-226ENST00000527889 NCAPG2Q86XI2 1143 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 ANKRD18AQ8IVF6 992 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 TRIM42Q8IWZ5 723 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 PGBD3Q8N328 593 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 CEP120Q8N960 986 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 CNBD1Q8NA66 436 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 FBXO27Q8NI29 283 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 TRPM4Q8TD43 1214 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 WHAMMQ8TF30 809 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 CELF1Q92879 486 aaKnown RBP4.97□□□□□ -1.61
CD44-226ENST00000527889 ABHD17AQ96GS6 310 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 CDC5LQ99459 802 aaKnown RBP4.97□□□□□ -1.61
CD44-226ENST00000527889 DNAJC7Q99615 494 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 FSD1Q9BTV5 496 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 BHLHE41Q9C0J9 482 aaPredicted RBP4.97□□□□□ -1.61
CD44-226ENST00000527889 IL25Q9H293 177 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 SPC25Q9HBM1 224 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 GPR108Q9NPR9 543 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 FANCLQ9NW38 375 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 KLHL42Q9P2K6 505 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 MROH5Q6ZUA9 1318 aa4.97□□□□□ -1.61
CD44-226ENST00000527889 SMCHD1A6NHR9 2005 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 ATAD5Q96QE3 1844 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 A0A096LPE4 126 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 LOC102724159A0A0B4J2E5 919 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 A0A0D9SFI3 127 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 A0A1W2PPZ6 126 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 ESYT3A0FGR9 886 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 WTIPA6NIX2 430 aaPredicted RBP4.96□□□□□ -1.62
CD44-226ENST00000527889 NFKBIEO00221 500 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 POLRMTO00411 1230 aaKnown RBP4.96□□□□□ -1.62
CD44-226ENST00000527889 GOLIM4O00461 696 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 TLR3O15455 904 aaKnown RBP4.96□□□□□ -1.62
CD44-226ENST00000527889 PDE8BO95263 885 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 CHGBP05060 677 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 SERPINB2P05120 415 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 IFIT1P09914 478 aaKnown RBP4.96□□□□□ -1.62
CD44-226ENST00000527889 FGFR2P21802 821 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 TM4SF1P30408 202 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 PHKA1P46020 1223 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 CTCFP49711 727 aaPredicted RBP4.96□□□□□ -1.62
CD44-226ENST00000527889 FXR1P51114 621 aaKnown RBP eCLIP4.96□□□□□ -1.62
CD44-226ENST00000527889 EIF6P56537 245 aaKnown RBP4.96□□□□□ -1.62
CD44-226ENST00000527889 ST5P78524 1137 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 CHRNDQ07001 517 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 FAAP100Q0VG06 881 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 HYAL2Q12891 473 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 NMIQ13287 307 aaPredicted RBP4.96□□□□□ -1.62
CD44-226ENST00000527889 PWP2Q15269 919 aaKnown RBP4.96□□□□□ -1.62
CD44-226ENST00000527889 DDR2Q16832 855 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 RPS26P11Q5JNZ5 115 aaPredicted RBP4.96□□□□□ -1.62
CD44-226ENST00000527889 EFHC2Q5JST6 749 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 TTC39AQ5SRH9 613 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 CWC27Q6UX04 472 aaKnown RBP4.96□□□□□ -1.62
CD44-226ENST00000527889 DDX46Q7L014 1031 aaKnown RBP4.96□□□□□ -1.62
CD44-226ENST00000527889 KIAA0907Q7Z7F0 614 aaPredicted RBP4.96□□□□□ -1.62
CD44-226ENST00000527889 CCDC84Q86UT8 332 aaPredicted RBP4.96□□□□□ -1.62
CD44-226ENST00000527889 RPUSD2Q8IZ73 545 aaKnown RBP4.96□□□□□ -1.62
CD44-226ENST00000527889 PLD4Q96BZ4 506 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 EVI5LQ96CN4 794 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 FAM227BQ96M60 508 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 IPO9Q96P70 1041 aaKnown RBP4.96□□□□□ -1.62
CD44-226ENST00000527889 HHIPQ96QV1 700 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 HAUS7Q99871 368 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 USP26Q9BXU7 913 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 ZNF576Q9H609 170 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 DIAPH3Q9NSV4 1193 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 PAG1Q9NWQ8 432 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 PRKAB1Q9Y478 270 aa4.96□□□□□ -1.62
CD44-226ENST00000527889 DUOX1Q9NRD9 1551 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 COL1A1P02452 1464 aaPredicted RBP4.95□□□□□ -1.62
CD44-226ENST00000527889 DCDC2BA2VCK2 349 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 FAM221AA4D161 298 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 C2CD2LO14523 706 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 PPP1R12AO14974 1030 aaPredicted RBP4.95□□□□□ -1.62
CD44-226ENST00000527889 SGSM2O43147 1006 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 REC8O95072 547 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 MAP3K6O95382 1288 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 PSAPP07602 524 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 SLURP2P0DP57 97 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 SLC5A1P13866 664 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 NFKB1P19838 968 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 MCAMP43121 646 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 RPS8P62241 208 aaKnown RBP4.95□□□□□ -1.62
CD44-226ENST00000527889 RASGRF1Q13972 1273 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 PUM3Q15397 648 aaKnown RBP4.95□□□□□ -1.62
CD44-226ENST00000527889 SLC15A2Q16348 729 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 CCDC158Q5M9N0 1113 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 RASIP1Q5U651 963 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 ZNF385CQ66K41 422 aaPredicted RBP4.95□□□□□ -1.62
CD44-226ENST00000527889 KANK3Q6NY19 840 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 CCDC129Q6ZRS4 1044 aa4.95□□□□□ -1.62
CD44-226ENST00000527889 TMEM102Q8N9M5 508 aaPredicted RBP4.95□□□□□ -1.62
CD44-226ENST00000527889 NLGN2Q8NFZ4 835 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms