RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 UBE2OQ9C0C9 1292 aaKnown RBP23.89■■□□□ 1.41
VPS28-206ENST00000526734 TRIOBPQ9H2D6 2365 aa23.88■■□□□ 1.41
VPS28-206ENST00000526734 EPB41L2O43491 1005 aaKnown RBP23.88■■□□□ 1.41
VPS28-206ENST00000526734 CPT1AP50416 773 aa23.88■■□□□ 1.41
VPS28-206ENST00000526734 STXBP2Q15833 593 aa23.88■■□□□ 1.41
VPS28-206ENST00000526734 BRDTQ58F21 947 aaPredicted RBP23.88■■□□□ 1.41
VPS28-206ENST00000526734 ARHGEF16Q5VV41 709 aa23.88■■□□□ 1.41
VPS28-206ENST00000526734 SYNE3Q6ZMZ3 975 aa23.88■■□□□ 1.41
VPS28-206ENST00000526734 DHX32Q7L7V1 743 aaKnown RBP23.88■■□□□ 1.41
VPS28-206ENST00000526734 TBC1D5Q92609 795 aa23.88■■□□□ 1.41
VPS28-206ENST00000526734 TAAR1Q96RJ0 339 aa23.88■■□□□ 1.41
VPS28-206ENST00000526734 PRDM5Q9NQX1 630 aaPredicted RBP23.88■■□□□ 1.41
VPS28-206ENST00000526734 GPHNQ9NQX3 736 aaPredicted RBP23.88■■□□□ 1.41
VPS28-206ENST00000526734 SEC63Q9UGP8 760 aaKnown RBP23.88■■□□□ 1.41
VPS28-206ENST00000526734 MYH6P13533 1939 aa23.87■■□□□ 1.41
VPS28-206ENST00000526734 OPLAHO14841 1288 aa23.87■■□□□ 1.41
VPS28-206ENST00000526734 TTLL4Q14679 1199 aa23.87■■□□□ 1.41
VPS28-206ENST00000526734 TDHQ8IZJ6 230 aa23.87■■□□□ 1.41
VPS28-206ENST00000526734 VTI1AQ96AJ9 217 aa23.87■■□□□ 1.41
VPS28-206ENST00000526734 MYL10Q9BUA6 226 aa23.87■■□□□ 1.41
VPS28-206ENST00000526734 POLR3EQ9NVU0 708 aa23.87■■□□□ 1.41
VPS28-206ENST00000526734 COL20A1Q9P218 1284 aa23.87■■□□□ 1.41
VPS28-206ENST00000526734 GCOM1H8Y6P7 765 aaPredicted RBP23.86■■□□□ 1.41
VPS28-206ENST00000526734 ARVCFO00192 962 aa23.86■■□□□ 1.41
VPS28-206ENST00000526734 PQBP1O60828 265 aaKnown RBP23.86■■□□□ 1.41
VPS28-206ENST00000526734 POLR2MP0CAP2 368 aa23.86■■□□□ 1.41
VPS28-206ENST00000526734 BEX3Q00994 111 aa23.86■■□□□ 1.41
VPS28-206ENST00000526734 KCNB2Q92953 911 aa23.86■■□□□ 1.41
VPS28-206ENST00000526734 PXMP2Q9NR77 195 aa23.86■■□□□ 1.41
VPS28-206ENST00000526734 KIAA0355O15063 1070 aa23.85■■□□□ 1.41
VPS28-206ENST00000526734 TLR3O15455 904 aaKnown RBP23.85■■□□□ 1.41
VPS28-206ENST00000526734 CDK7P50613 346 aa23.85■■□□□ 1.41
VPS28-206ENST00000526734 IRX5P78411 483 aaPredicted RBP23.85■■□□□ 1.41
VPS28-206ENST00000526734 MDM2Q00987 491 aaPredicted RBP23.85■■□□□ 1.41
VPS28-206ENST00000526734 EXOSC10Q01780 885 aaKnown RBP23.85■■□□□ 1.41
VPS28-206ENST00000526734 OR6J1Q8NGC5 347 aa23.85■■□□□ 1.41
VPS28-206ENST00000526734 KPNA6O60684 536 aa23.84■■□□□ 1.41
VPS28-206ENST00000526734 EIF3JO75822 258 aaKnown RBP23.84■■□□□ 1.41
VPS28-206ENST00000526734 NR3C2P08235 984 aa23.84■■□□□ 1.41
VPS28-206ENST00000526734 TXNP10599 105 aaKnown RBP23.84■■□□□ 1.41
VPS28-206ENST00000526734 HSPA4P34932 840 aa23.84■■□□□ 1.41
VPS28-206ENST00000526734 RCAN1P53805 252 aa23.84■■□□□ 1.41
VPS28-206ENST00000526734 CXCL17Q6UXB2 119 aa23.84■■□□□ 1.41
VPS28-206ENST00000526734 RASEFQ8IZ41 740 aa23.84■■□□□ 1.41
VPS28-206ENST00000526734 FANCBQ8NB91 859 aa23.84■■□□□ 1.41
VPS28-206ENST00000526734 RBM28Q9NW13 759 aaKnown RBP23.84■■□□□ 1.41
VPS28-206ENST00000526734 EIF2AK2P19525 551 aaKnown RBP23.83■■□□□ 1.41
VPS28-206ENST00000526734 APOA5Q6Q788 366 aa23.83■■□□□ 1.41
VPS28-206ENST00000526734 SLC43A3Q8NBI5 491 aa23.83■■□□□ 1.41
VPS28-206ENST00000526734 PDCD2LQ9BRP1 358 aa23.83■■□□□ 1.41
VPS28-206ENST00000526734 LRRC2Q9BYS8 371 aa23.83■■□□□ 1.41
VPS28-206ENST00000526734 TMEM39AQ9NV64 488 aa23.83■■□□□ 1.41
VPS28-206ENST00000526734 TRIM43BA6NCK2 446 aa23.82■■□□□ 1.4
VPS28-206ENST00000526734 FAAP100Q0VG06 881 aa23.82■■□□□ 1.4
VPS28-206ENST00000526734 COL9A3Q14050 684 aaPredicted RBP23.82■■□□□ 1.4
VPS28-206ENST00000526734 ADCK5Q3MIX3 580 aa23.82■■□□□ 1.4
VPS28-206ENST00000526734 LRIT3Q3SXY7 679 aa23.82■■□□□ 1.4
VPS28-206ENST00000526734 CCDC62Q6P9F0 684 aa23.82■■□□□ 1.4
VPS28-206ENST00000526734 KCNV1Q6PIU1 500 aa23.82■■□□□ 1.4
VPS28-206ENST00000526734 TMTC3Q6ZXV5 915 aa23.82■■□□□ 1.4
VPS28-206ENST00000526734 MICU3Q86XE3 530 aa23.82■■□□□ 1.4
VPS28-206ENST00000526734 SRBD1Q8N5C6 995 aaKnown RBP23.82■■□□□ 1.4
VPS28-206ENST00000526734 TRIM43Q96BQ3 446 aaPredicted RBP23.82■■□□□ 1.4
VPS28-206ENST00000526734 LTBP2Q14767 1821 aa23.82■■□□□ 1.4
VPS28-206ENST00000526734 A6NJR5 290 aa23.81■■□□□ 1.4
VPS28-206ENST00000526734 PLEKHA8P1O95397 391 aa23.81■■□□□ 1.4
VPS28-206ENST00000526734 RAG1P15918 1043 aa23.81■■□□□ 1.4
VPS28-206ENST00000526734 ITGA7Q13683 1181 aa23.81■■□□□ 1.4
VPS28-206ENST00000526734 SH3RF1Q7Z6J0 888 aa23.81■■□□□ 1.4
VPS28-206ENST00000526734 FAM126BQ8IXS8 530 aa23.81■■□□□ 1.4
VPS28-206ENST00000526734 CUL5Q93034 780 aa23.81■■□□□ 1.4
VPS28-206ENST00000526734 GH1P01241 217 aa23.8■■□□□ 1.4
VPS28-206ENST00000526734 HOXA13P31271 388 aaPredicted RBP23.8■■□□□ 1.4
VPS28-206ENST00000526734 TMEM63BQ5T3F8 832 aa23.8■■□□□ 1.4
VPS28-206ENST00000526734 TEX2Q8IWB9 1127 aa23.8■■□□□ 1.4
VPS28-206ENST00000526734 MTG1Q9BT17 334 aaPredicted RBP23.8■■□□□ 1.4
VPS28-206ENST00000526734 TBX21Q9UL17 535 aa23.8■■□□□ 1.4
VPS28-206ENST00000526734 PIK3CDO00329 1044 aa23.79■■□□□ 1.4
VPS28-206ENST00000526734 ZBTB43O43298 467 aa23.79■■□□□ 1.4
VPS28-206ENST00000526734 STAM2O75886 525 aa23.79■■□□□ 1.4
VPS28-206ENST00000526734 RXRAP19793 462 aa23.79■■□□□ 1.4
VPS28-206ENST00000526734 PSMA5P28066 241 aa23.79■■□□□ 1.4
VPS28-206ENST00000526734 CCND2P30279 289 aa23.79■■□□□ 1.4
VPS28-206ENST00000526734 FGD1P98174 961 aa23.79■■□□□ 1.4
VPS28-206ENST00000526734 PURAQ00577 322 aaKnown RBP23.79■■□□□ 1.4
VPS28-206ENST00000526734 PGM5Q15124 567 aa23.79■■□□□ 1.4
VPS28-206ENST00000526734 SEPT14Q6ZU15 432 aa23.79■■□□□ 1.4
VPS28-206ENST00000526734 VSIG10LQ86VR7 867 aa23.79■■□□□ 1.4
VPS28-206ENST00000526734 PIBF1Q8WXW3 757 aa23.79■■□□□ 1.4
VPS28-206ENST00000526734 BADQ92934 168 aa23.79■■□□□ 1.4
VPS28-206ENST00000526734 FRMPD4Q14CM0 1322 aa23.79■■□□□ 1.4
VPS28-206ENST00000526734 ARIH2O95376 493 aa23.78■■□□□ 1.4
VPS28-206ENST00000526734 PTGS1P23219 599 aa23.78■■□□□ 1.4
VPS28-206ENST00000526734 RTN1Q16799 776 aa23.78■■□□□ 1.4
VPS28-206ENST00000526734 GPR153Q6NV75 609 aa23.78■■□□□ 1.4
VPS28-206ENST00000526734 BLOC1S2Q6QNY1 142 aa23.78■■□□□ 1.4
VPS28-206ENST00000526734 EMID1Q96A84 441 aaPredicted RBP23.78■■□□□ 1.4
VPS28-206ENST00000526734 JAKMIP1Q96N16 626 aaKnown RBP23.78■■□□□ 1.4
VPS28-206ENST00000526734 SNX14Q9Y5W7 946 aa23.78■■□□□ 1.4
VPS28-206ENST00000526734 MRVI1Q9Y6F6 885 aa23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms