RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 TLE2Q04725 743 aa18.84■□□□□ 0.61
LSM1-205ENST00000523511 FANCBQ8NB91 859 aa18.84■□□□□ 0.61
LSM1-205ENST00000523511 POLR3EQ9NVU0 708 aa18.84■□□□□ 0.61
LSM1-205ENST00000523511 RBM28Q9NW13 759 aaKnown RBP18.84■□□□□ 0.61
LSM1-205ENST00000523511 PQBP1O60828 265 aaKnown RBP18.83■□□□□ 0.6
LSM1-205ENST00000523511 CLTBP09497 229 aa18.83■□□□□ 0.6
LSM1-205ENST00000523511 HSD17B4P51659 736 aa18.83■□□□□ 0.6
LSM1-205ENST00000523511 GHRHRQ02643 423 aa18.83■□□□□ 0.6
LSM1-205ENST00000523511 KCNV1Q6PIU1 500 aa18.83■□□□□ 0.6
LSM1-205ENST00000523511 ANKRD33Q7Z3H0 272 aa18.83■□□□□ 0.6
LSM1-205ENST00000523511 TBC1D5Q92609 795 aa18.83■□□□□ 0.6
LSM1-205ENST00000523511 MYL10Q9BUA6 226 aa18.83■□□□□ 0.6
LSM1-205ENST00000523511 TMEM39AQ9NV64 488 aa18.83■□□□□ 0.6
LSM1-205ENST00000523511 PLXNA1Q9UIW2 1896 aa18.82■□□□□ 0.6
LSM1-205ENST00000523511 ARVCFO00192 962 aa18.82■□□□□ 0.6
LSM1-205ENST00000523511 CYTH3O43739 400 aa18.82■□□□□ 0.6
LSM1-205ENST00000523511 NR3C2P08235 984 aa18.82■□□□□ 0.6
LSM1-205ENST00000523511 EXOSC10Q01780 885 aaKnown RBP18.82■□□□□ 0.6
LSM1-205ENST00000523511 OR6J1Q8NGC5 347 aa18.82■□□□□ 0.6
LSM1-205ENST00000523511 PRO3102Q9H379 93 aa18.82■□□□□ 0.6
LSM1-205ENST00000523511 PXMP2Q9NR77 195 aa18.82■□□□□ 0.6
LSM1-205ENST00000523511 CCDC196A0A1B0GTZ2 297 aa18.81■□□□□ 0.6
LSM1-205ENST00000523511 MYADML2A6NDP7 307 aa18.81■□□□□ 0.6
LSM1-205ENST00000523511 ZBTB43O43298 467 aa18.81■□□□□ 0.6
LSM1-205ENST00000523511 ADCY6O43306 1168 aa18.81■□□□□ 0.6
LSM1-205ENST00000523511 RAG1P15918 1043 aa18.81■□□□□ 0.6
LSM1-205ENST00000523511 EIF2AK2P19525 551 aaKnown RBP18.81■□□□□ 0.6
LSM1-205ENST00000523511 HSPA4P34932 840 aa18.81■□□□□ 0.6
LSM1-205ENST00000523511 MDM2Q00987 491 aaPredicted RBP18.81■□□□□ 0.6
LSM1-205ENST00000523511 BEX3Q00994 111 aa18.81■□□□□ 0.6
LSM1-205ENST00000523511 BLOC1S2Q6QNY1 142 aa18.81■□□□□ 0.6
LSM1-205ENST00000523511 PIBF1Q8WXW3 757 aa18.81■□□□□ 0.6
LSM1-205ENST00000523511 LRRC2Q9BYS8 371 aa18.81■□□□□ 0.6
LSM1-205ENST00000523511 PPP1R11O60927 126 aaPredicted RBP18.8■□□□□ 0.6
LSM1-205ENST00000523511 CXCL17Q6UXB2 119 aa18.8■□□□□ 0.6
LSM1-205ENST00000523511 SEPT14Q6ZU15 432 aa18.8■□□□□ 0.6
LSM1-205ENST00000523511 MICU3Q86XE3 530 aa18.8■□□□□ 0.6
LSM1-205ENST00000523511 RASEFQ8IZ41 740 aa18.8■□□□□ 0.6
LSM1-205ENST00000523511 TDHQ8IZJ6 230 aa18.8■□□□□ 0.6
LSM1-205ENST00000523511 SMARCC2Q8TAQ2 1214 aa18.8■□□□□ 0.6
LSM1-205ENST00000523511 KCNB2Q92953 911 aa18.8■□□□□ 0.6
LSM1-205ENST00000523511 DDX49Q9Y6V7 483 aaKnown RBP18.8■□□□□ 0.6
LSM1-205ENST00000523511 STAM2O75886 525 aa18.79■□□□□ 0.6
LSM1-205ENST00000523511 GH1P01241 217 aa18.79■□□□□ 0.6
LSM1-205ENST00000523511 MYCLP12524 364 aaPredicted RBP18.79■□□□□ 0.6
LSM1-205ENST00000523511 CCND2P30279 289 aa18.79■□□□□ 0.6
LSM1-205ENST00000523511 CDK7P50613 346 aa18.79■□□□□ 0.6
LSM1-205ENST00000523511 RCAN1P53805 252 aa18.79■□□□□ 0.6
LSM1-205ENST00000523511 ITGA7Q13683 1181 aa18.79■□□□□ 0.6
LSM1-205ENST00000523511 ADCK5Q3MIX3 580 aa18.79■□□□□ 0.6
LSM1-205ENST00000523511 FCHSD1Q86WN1 690 aa18.79■□□□□ 0.6
LSM1-205ENST00000523511 SRBD1Q8N5C6 995 aaKnown RBP18.79■□□□□ 0.6
LSM1-205ENST00000523511 JAKMIP1Q96N16 626 aaKnown RBP18.79■□□□□ 0.6
LSM1-205ENST00000523511 PDLIM7Q9NR12 457 aa18.79■□□□□ 0.6
LSM1-205ENST00000523511 NAP1L2Q9ULW6 460 aaPredicted RBP18.79■□□□□ 0.6
LSM1-205ENST00000523511 MRVI1Q9Y6F6 885 aa18.79■□□□□ 0.6
LSM1-205ENST00000523511 KIAA0355O15063 1070 aa18.78■□□□□ 0.6
LSM1-205ENST00000523511 CTAGE5O15320 804 aa18.78■□□□□ 0.6
LSM1-205ENST00000523511 SUPT20HL2P0C7V6 817 aa18.78■□□□□ 0.6
LSM1-205ENST00000523511 TGFB3P10600 412 aa18.78■□□□□ 0.6
LSM1-205ENST00000523511 HOXA13P31271 388 aaPredicted RBP18.78■□□□□ 0.6
LSM1-205ENST00000523511 RTN1Q16799 776 aa18.78■□□□□ 0.6
LSM1-205ENST00000523511 GNPTABQ3T906 1256 aa18.78■□□□□ 0.6
LSM1-205ENST00000523511 APOA5Q6Q788 366 aa18.78■□□□□ 0.6
LSM1-205ENST00000523511 TMTC3Q6ZXV5 915 aa18.78■□□□□ 0.6
LSM1-205ENST00000523511 VSIG10LQ86VR7 867 aa18.78■□□□□ 0.6
LSM1-205ENST00000523511 TEX2Q8IWB9 1127 aa18.78■□□□□ 0.6
LSM1-205ENST00000523511 CCDC82Q8N4S0 544 aa18.78■□□□□ 0.6
LSM1-205ENST00000523511 PDCD2LQ9BRP1 358 aa18.78■□□□□ 0.6
LSM1-205ENST00000523511 MTG1Q9BT17 334 aaPredicted RBP18.78■□□□□ 0.6
LSM1-205ENST00000523511 PSTPIP2Q9H939 334 aa18.78■□□□□ 0.6
LSM1-205ENST00000523511 COL20A1Q9P218 1284 aa18.78■□□□□ 0.6
LSM1-205ENST00000523511 KLF18A0A0U1RQI7 1052 aa18.77■□□□□ 0.6
LSM1-205ENST00000523511 A6NJR5 290 aa18.77■□□□□ 0.6
LSM1-205ENST00000523511 OPLAHO14841 1288 aa18.77■□□□□ 0.6
LSM1-205ENST00000523511 PLEKHA8P1O95397 391 aa18.77■□□□□ 0.6
LSM1-205ENST00000523511 MYL3P08590 195 aa18.77■□□□□ 0.6
LSM1-205ENST00000523511 RXRAP19793 462 aa18.77■□□□□ 0.6
LSM1-205ENST00000523511 FAAP100Q0VG06 881 aa18.77■□□□□ 0.6
LSM1-205ENST00000523511 LAMC2Q13753 1193 aa18.77■□□□□ 0.6
LSM1-205ENST00000523511 XRRA1Q6P2D8 792 aa18.77■□□□□ 0.6
LSM1-205ENST00000523511 SNX14Q9Y5W7 946 aa18.77■□□□□ 0.6
LSM1-205ENST00000523511 GOLGA8AA7E2F4 631 aa18.76■□□□□ 0.59
LSM1-205ENST00000523511 GOLGA8BA8MQT2 603 aa18.76■□□□□ 0.59
LSM1-205ENST00000523511 PIK3CDO00329 1044 aa18.76■□□□□ 0.59
LSM1-205ENST00000523511 SLC34A2O95436 690 aa18.76■□□□□ 0.59
LSM1-205ENST00000523511 CASTP20810 708 aaKnown RBP18.76■□□□□ 0.59
LSM1-205ENST00000523511 FXR1P51114 621 aaKnown RBP eCLIP18.76■□□□□ 0.59
LSM1-205ENST00000523511 IRX5P78411 483 aaPredicted RBP18.76■□□□□ 0.59
LSM1-205ENST00000523511 PGM5Q15124 567 aa18.76■□□□□ 0.59
LSM1-205ENST00000523511 SLC35G1Q2M3R5 365 aa18.76■□□□□ 0.59
LSM1-205ENST00000523511 DHX37Q8IY37 1157 aaKnown RBP18.76■□□□□ 0.59
LSM1-205ENST00000523511 BADQ92934 168 aa18.76■□□□□ 0.59
LSM1-205ENST00000523511 GLT8D2Q9H1C3 349 aa18.76■□□□□ 0.59
LSM1-205ENST00000523511 EHMT1Q9H9B1 1298 aa18.76■□□□□ 0.59
LSM1-205ENST00000523511 TRIM43BA6NCK2 446 aa18.75■□□□□ 0.59
LSM1-205ENST00000523511 hCG_1984214I3L0E3 225 aa18.75■□□□□ 0.59
LSM1-205ENST00000523511 TIMP1P01033 207 aa18.75■□□□□ 0.59
LSM1-205ENST00000523511 PURAQ00577 322 aaKnown RBP18.75■□□□□ 0.59
LSM1-205ENST00000523511 LY6KQ17RY6 165 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms