RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 A0A1W2PQC6 194 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 EIF3CLB5ME19 914 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 EMBQ6PCB8 327 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 EIF3CQ99613 913 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 RAB17Q9H0T7 212 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 CCNL1Q9UK58 526 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 COL4A3BPQ9Y5P4 624 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 SLIT1O75093 1534 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 GSTA5Q7RTV2 222 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 CCDC50Q8IVM0 306 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 FBXL16Q8N461 479 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 SRBD1Q8N5C6 995 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 MLXIPQ9HAP2 919 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 CAPN11Q9UMQ6 739 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 CASP7P55210 303 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 ARHGAP44Q17R89 818 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 DPP8Q6V1X1 898 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 MMS19Q96T76 1030 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 BSDC1Q9NW68 430 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 PXDNQ92626 1479 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 ANKRD26Q9UPS8 1709 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 EXOC3L4Q17RC7 722 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 TRIM65Q6PJ69 517 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 CACNA2D3Q8IZS8 1091 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 COG1Q8WTW3 980 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 DDX12PQ92771 950 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 FUT8Q9BYC5 575 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 DCP1AQ9NPI6 582 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 TRIM10Q9UDY6 481 aa9.25□□□□□ -0.93
LIMCH1-216ENST00000512820 OVOS2A0A0G2JMS6 1433 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 EXOC3O60645 756 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 EEF2P13639 858 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 TOB1P50616 345 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 CACNB1Q02641 598 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 USH1GQ495M9 461 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 PRR16Q569H4 304 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 DENND2CQ68D51 928 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 FAM133AQ8N9E0 248 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 SUGCTQ9HAC7 445 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 ZBTB21Q9ULJ3 1066 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 NFU1Q9UMS0 254 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 STK24Q9Y6E0 443 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 NR2F2P24468 414 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 IFT88Q13099 833 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 TBC1D22AQ8WUA7 517 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 COA7Q96BR5 231 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 PPP1R3GB7ZBB8 358 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 SERPING1P05155 500 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 PRDX5P30044 214 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 LRRC63Q05C16 580 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 DIXDC1Q155Q3 683 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 ADAT2Q7Z6V5 191 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 PNMA8AQ86V59 439 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 FOXP4Q8IVH2 680 aaPredicted RBP9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 NOA1Q8NC60 698 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 PLCB1Q9NQ66 1216 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 PKD2L1Q9P0L9 805 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 TXNRD1Q16881 649 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 NAA35Q5VZE5 725 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 CROCCP2Q86T23 111 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 CCDC105Q8IYK2 499 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 CPVLQ9H3G5 476 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 EFCC1Q9HA90 598 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 KCND1Q9NSA2 647 aa9.24□□□□□ -0.93
LIMCH1-216ENST00000512820 LRRC53A6NM62 1247 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 MAP2K2P36507 400 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 ADSSL1Q8N142 457 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 RDH13Q8NBN7 331 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 NKIRAS1Q9NYS0 192 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 ADAMTS1Q9UHI8 967 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 BZW2Q9Y6E2 419 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 RGS16O15492 202 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 CD44P16070 742 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 GTF2IP78347 998 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 PDCLQ13371 301 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 NTRK3Q16288 839 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 GKAP1Q5VSY0 366 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 NFRKBQ6P4R8 1299 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 UNC13DQ70J99 1090 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 MAEAQ7L5Y9 396 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 KRT26Q7Z3Y9 468 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 SRLQ86TD4 932 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 HNRNPLLQ8WVV9 542 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 OSBPL9Q96SU4 736 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 METTL14Q9HCE5 456 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 TARSL2A2RTX5 802 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 ARHGEF35A5YM69 484 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 PSMD2Q13200 908 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 KCNB1Q14721 858 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 PPP4R3AQ6IN85 833 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 BRINP3Q76B58 766 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 TPH2Q8IWU9 490 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 RSRC1Q96IZ7 334 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 C8orf37Q96NL8 207 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 PNKPQ96T60 521 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 MINPP1Q9UNW1 487 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 TRIM66O15016 1216 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 ZNF185O15231 689 aa9.23□□□□□ -0.93
LIMCH1-216ENST00000512820 N4BP1O75113 896 aaKnown RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms