RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 COL20A1Q9P218 1284 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 POTEFA5A3E0 1075 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 SMCO2A6NFE2 343 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 DEXIO95424 95 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 SNAI1O95863 264 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 GJB1P08034 283 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 MYCLP12524 364 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 ACVR2BQ13705 512 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 FBXO16Q8IX29 292 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 U2AF1L4Q8WU68 220 aaKnown RBP13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 MAF1Q9H063 256 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 ABHD16BQ9H3Z7 469 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 MAP3K20Q9NYL2 800 aaKnown RBP13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 NRBP1Q9UHY1 535 aa13.13□□□□□ -0.31
LIMCH1-210ENST00000509454 LCTP09848 1927 aa13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 ASTN1O14525 1302 aa13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 SPDYE3A6NKU9 549 aa13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 AKR1A1P14550 325 aa13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 EN2P19622 333 aaPredicted RBP13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 FOSBP53539 338 aa13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 PKN1Q16512 942 aa13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 CCDC148Q8NFR7 591 aa13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 C6orf50Q9HD87 102 aa13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 PAK6Q9NQU5 681 aaPredicted RBP13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 PXMP2Q9NR77 195 aa13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 SH2B1Q9NRF2 756 aaPredicted RBP13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 VPS54Q9P1Q0 977 aa13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 ORC3Q9UBD5 711 aaPredicted RBP13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 DDX20Q9UHI6 824 aaKnown RBP13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 FAM184BQ9ULE4 1060 aa13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 KIAA0100Q14667 2235 aaKnown RBP13.12□□□□□ -0.31
LIMCH1-210ENST00000509454 SEPT4O43236 478 aa13.11□□□□□ -0.31
LIMCH1-210ENST00000509454 MSCO60682 206 aa13.11□□□□□ -0.31
LIMCH1-210ENST00000509454 SGPL1O95470 568 aa13.11□□□□□ -0.31
LIMCH1-210ENST00000509454 ZNF865P0CJ78 1059 aaPredicted RBP13.11□□□□□ -0.31
LIMCH1-210ENST00000509454 RARBP10826 455 aa13.11□□□□□ -0.31
LIMCH1-210ENST00000509454 NLRP5P59047 1200 aa13.11□□□□□ -0.31
LIMCH1-210ENST00000509454 STXBP2Q15833 593 aa13.11□□□□□ -0.31
LIMCH1-210ENST00000509454 CCDC144BQ3MJ40 725 aa13.11□□□□□ -0.31
LIMCH1-210ENST00000509454 TYW1BQ6NUM6 668 aa13.11□□□□□ -0.31
LIMCH1-210ENST00000509454 WASF1Q92558 559 aa13.11□□□□□ -0.31
LIMCH1-210ENST00000509454 GLT8D2Q9H1C3 349 aa13.11□□□□□ -0.31
LIMCH1-210ENST00000509454 EHMT1Q9H9B1 1298 aa13.11□□□□□ -0.31
LIMCH1-210ENST00000509454 VTA1Q9NP79 307 aa13.11□□□□□ -0.31
LIMCH1-210ENST00000509454 RIC8AQ9NPQ8 531 aa13.11□□□□□ -0.31
LIMCH1-210ENST00000509454 LOC102724159A0A0B4J2E5 919 aa13.1□□□□□ -0.31
LIMCH1-210ENST00000509454 IGHA2P01877 340 aa13.1□□□□□ -0.31
LIMCH1-210ENST00000509454 NR3C2P08235 984 aa13.1□□□□□ -0.31
LIMCH1-210ENST00000509454 XBP1P17861 261 aa13.1□□□□□ -0.31
LIMCH1-210ENST00000509454 CCND2P30279 289 aa13.1□□□□□ -0.31
LIMCH1-210ENST00000509454 GJA8P48165 433 aa13.1□□□□□ -0.31
LIMCH1-210ENST00000509454 PWP2Q15269 919 aaKnown RBP13.1□□□□□ -0.31
LIMCH1-210ENST00000509454 SEPT14Q6ZU15 432 aa13.1□□□□□ -0.31
LIMCH1-210ENST00000509454 LENG1Q96BZ8 264 aaPredicted RBP13.1□□□□□ -0.31
LIMCH1-210ENST00000509454 AIFM3Q96NN9 605 aa13.1□□□□□ -0.31
LIMCH1-210ENST00000509454 IWS1Q96ST2 819 aa13.1□□□□□ -0.31
LIMCH1-210ENST00000509454 PIK3CDO00329 1044 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 MEIS2O14770 477 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 JAK2O60674 1132 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 CTDNEP1O95476 244 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 GNA11P29992 359 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 ADCYAP1R1P41586 468 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 MCM2P49736 904 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 GHRHRQ02643 423 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 TNFAIP2Q03169 654 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 PGM5Q15124 567 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 JAKMIP3Q5VZ66 844 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 NSUN7Q8NE18 718 aaKnown RBP13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 IL27Q8NEV9 243 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 ZFP91Q96JP5 570 aaPredicted RBP13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 PGBD1Q96JS3 809 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 PDCD2LQ9BRP1 358 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 XPNPEP3Q9NQH7 507 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 PDGFCQ9NRA1 345 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 TMEM260Q9NX78 707 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 PCDHA6Q9UN73 950 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 PCDHA8Q9Y5H6 950 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 STK36Q9NRP7 1315 aa13.09□□□□□ -0.31
LIMCH1-210ENST00000509454 REXO1Q8N1G1 1221 aaKnown RBP13.08□□□□□ -0.31
LIMCH1-210ENST00000509454 IL31RAQ8NI17 732 aa13.08□□□□□ -0.31
LIMCH1-210ENST00000509454 BICD2Q8TD16 824 aa13.08□□□□□ -0.31
LIMCH1-210ENST00000509454 MORC4Q8TE76 937 aa13.08□□□□□ -0.31
LIMCH1-210ENST00000509454 ALG1Q9BT22 464 aa13.08□□□□□ -0.31
LIMCH1-210ENST00000509454 SH3GLB2Q9NR46 395 aa13.08□□□□□ -0.31
LIMCH1-210ENST00000509454 HTTP42858 3142 aa13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 EIF3JO75822 258 aaKnown RBP13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 FARP2O94887 1054 aaPredicted RBP13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 CD2BP2O95400 341 aaKnown RBP13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 PGK1P00558 417 aa13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 EDNRBP24530 442 aa13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 TRIM29Q14134 588 aa13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 LHX8Q68G74 356 aa13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 IQSEC1Q6DN90 963 aa13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 FAM184AQ8NB25 1140 aa13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 SCFD2Q8WU76 684 aa13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 ANO3Q9BYT9 981 aa13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 WDR11Q9BZH6 1224 aa13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 KATNBL1Q9H079 304 aa13.08□□□□□ -0.32
LIMCH1-210ENST00000509454 ZMYND12Q9H0C1 365 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms