RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.77■□□□□ 0.288e-27■□□□□ 10.1
HMGCS1-203ENST00000507004 PPP1R12CQ9BZL4 782 aa16.77■□□□□ 0.28
HMGCS1-203ENST00000507004 ALDH8A1Q9H2A2 487 aaPredicted RBP16.77■□□□□ 0.28
HMGCS1-203ENST00000507004 SEMA6BQ9H3T3 888 aa16.77■□□□□ 0.28
HMGCS1-203ENST00000507004 VAT1LQ9HCJ6 419 aa16.77■□□□□ 0.28
HMGCS1-203ENST00000507004 EIF3JO75822 258 aaKnown RBP16.76■□□□□ 0.27
HMGCS1-203ENST00000507004 GH1P01241 217 aa16.76■□□□□ 0.27
HMGCS1-203ENST00000507004 MYL3P08590 195 aa16.76■□□□□ 0.27
HMGCS1-203ENST00000507004 CSF2RAP15509 400 aa16.76■□□□□ 0.27
HMGCS1-203ENST00000507004 GRM4Q14833 912 aa16.76■□□□□ 0.27
HMGCS1-203ENST00000507004 TMEM240Q5SV17 173 aa16.76■□□□□ 0.27
HMGCS1-203ENST00000507004 CATIPQ7Z7H3 387 aa16.76■□□□□ 0.27
HMGCS1-203ENST00000507004 TMTC2Q8N394 836 aa16.76■□□□□ 0.27
HMGCS1-203ENST00000507004 MAP4K1Q92918 833 aa16.76■□□□□ 0.27
HMGCS1-203ENST00000507004 GUCD1Q96NT3 240 aa16.76■□□□□ 0.27
HMGCS1-203ENST00000507004 MAP3K14Q99558 947 aa16.76■□□□□ 0.27
HMGCS1-203ENST00000507004 IL25Q9H293 177 aa16.76■□□□□ 0.27
HMGCS1-203ENST00000507004 CPVLQ9H3G5 476 aa16.76■□□□□ 0.27
HMGCS1-203ENST00000507004 GRIN2DO15399 1336 aa16.75■□□□□ 0.27
HMGCS1-203ENST00000507004 MYH6P13533 1939 aa16.75■□□□□ 0.27
HMGCS1-203ENST00000507004 E7EWF7 191 aa16.75■□□□□ 0.27
HMGCS1-203ENST00000507004 B4GALT4O60513 344 aa16.75■□□□□ 0.27
HMGCS1-203ENST00000507004 FGBP02675 491 aa16.75■□□□□ 0.27
HMGCS1-203ENST00000507004 HSD17B4P51659 736 aa16.75■□□□□ 0.27
HMGCS1-203ENST00000507004 RASIP1Q5U651 963 aa16.75■□□□□ 0.27
HMGCS1-203ENST00000507004 CCDC62Q6P9F0 684 aa16.75■□□□□ 0.27
HMGCS1-203ENST00000507004 CYB5R4Q7L1T6 521 aa16.75■□□□□ 0.27
HMGCS1-203ENST00000507004 HERVK_113Q902F9 699 aa16.75■□□□□ 0.27
HMGCS1-203ENST00000507004 TAAR1Q96RJ0 339 aa16.75■□□□□ 0.27
HMGCS1-203ENST00000507004 NOC4LQ9BVI4 516 aaKnown RBP16.75■□□□□ 0.27
HMGCS1-203ENST00000507004 RIOX1Q9H6W3 641 aa16.75■□□□□ 0.27
HMGCS1-203ENST00000507004 MAD2L2Q9UI95 211 aa16.75■□□□□ 0.27
HMGCS1-203ENST00000507004 PCDHA1Q9Y5I3 950 aa16.75■□□□□ 0.27
HMGCS1-203ENST00000507004 DDX49Q9Y6V7 483 aaKnown RBP16.75■□□□□ 0.27
HMGCS1-203ENST00000507004 CFBP00751 764 aa16.74■□□□□ 0.27
HMGCS1-203ENST00000507004 CASTP20810 708 aaKnown RBP16.74■□□□□ 0.27
HMGCS1-203ENST00000507004 SMARCA1P28370 1054 aa16.74■□□□□ 0.27
HMGCS1-203ENST00000507004 KIF5BP33176 963 aa16.74■□□□□ 0.27
HMGCS1-203ENST00000507004 CYP2C18P33260 490 aa16.74■□□□□ 0.27
HMGCS1-203ENST00000507004 RFC2P35250 354 aa16.74■□□□□ 0.27
HMGCS1-203ENST00000507004 PTH1RQ03431 593 aa16.74■□□□□ 0.27
HMGCS1-203ENST00000507004 RAB30Q15771 203 aa16.74■□□□□ 0.27
HMGCS1-203ENST00000507004 ZNF365Q70YC5 407 aa16.74■□□□□ 0.27
HMGCS1-203ENST00000507004 STAG2Q8N3U4 1231 aa16.74■□□□□ 0.27
HMGCS1-203ENST00000507004 EMID1Q96A84 441 aaPredicted RBP16.74■□□□□ 0.27
HMGCS1-203ENST00000507004 LZTS2Q9BRK4 669 aa16.74■□□□□ 0.27
HMGCS1-203ENST00000507004 DNAH12Q6ZR08 3092 aa16.74■□□□□ 0.27
HMGCS1-203ENST00000507004 PNMA6FA0A0J9YX94 578 aa16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 DDAH1O94760 285 aa16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 NR3C2P08235 984 aa16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 DNAJB2P25686 324 aa16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 GNAQP50148 359 aa16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 PSMC6P62333 389 aa16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 TROAPQ12815 778 aa16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 BFSP2Q13515 415 aa16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 LAMC2Q13753 1193 aa16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 TMEM67Q5HYA8 995 aa16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 CASC1Q6TDU7 716 aa16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 CCDC155Q8N6L0 562 aa16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 CTCFLQ8NI51 663 aaPredicted RBP16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 CDX2Q99626 313 aaPredicted RBP16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 KATNAL1Q9BW62 490 aa16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 TRPV6Q9H1D0 765 aa16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 PXMP2Q9NR77 195 aa16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 SCN10AQ9Y5Y9 1956 aa16.73■□□□□ 0.27
HMGCS1-203ENST00000507004 GCOM1H8Y6P7 765 aaPredicted RBP16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 PITPNM1O00562 1244 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 PARNO95453 639 aaKnown RBP16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 POLR2MP0CAP2 368 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 TGFB3P10600 412 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 IRX6P78412 446 aaPredicted RBP16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 DGKDQ16760 1214 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 FAM47CQ5HY64 1035 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 TMEM63BQ5T3F8 832 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 SEPT14Q6ZU15 432 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 STOX1Q6ZVD7 989 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 C16orf59Q7L2K0 433 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 SESTD1Q86VW0 696 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 RETREG2Q8NC44 543 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 TBC1D5Q92609 795 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 TIFAQ96CG3 184 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 TMEM87BQ96K49 555 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 FAM161BQ96MY7 647 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 COL20A1Q9P218 1284 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 MSRAQ9UJ68 235 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 NOD1Q9Y239 953 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 RBM8AQ9Y5S9 174 aaKnown RBP16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 MRVI1Q9Y6F6 885 aa16.72■□□□□ 0.27
HMGCS1-203ENST00000507004 STAM2O75886 525 aa16.71■□□□□ 0.27
HMGCS1-203ENST00000507004 CALM1P0DP23 149 aa16.71■□□□□ 0.27
HMGCS1-203ENST00000507004 CALM2P0DP24 149 aa16.71■□□□□ 0.27
HMGCS1-203ENST00000507004 CALM3P0DP25 149 aa16.71■□□□□ 0.27
HMGCS1-203ENST00000507004 ACTN1P12814 892 aa16.71■□□□□ 0.27
HMGCS1-203ENST00000507004 EIF2AK2P19525 551 aaKnown RBP16.71■□□□□ 0.27
HMGCS1-203ENST00000507004 MCM5P33992 734 aa16.71■□□□□ 0.27
HMGCS1-203ENST00000507004 NBPF20Q3BBV1 942 aa16.71■□□□□ 0.27
HMGCS1-203ENST00000507004 HOMER1Q86YM7 354 aa16.71■□□□□ 0.27
HMGCS1-203ENST00000507004 MB21D2Q8IYB1 491 aaPredicted RBP16.71■□□□□ 0.27
HMGCS1-203ENST00000507004 PDCD2LQ9BRP1 358 aa16.71■□□□□ 0.27
HMGCS1-203ENST00000507004 TTYH1Q9H313 450 aaPredicted RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms