RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 RRP36Q96EU6 259 aaKnown RBP16.51■□□□□ 0.23
HOXC9-202ENST00000504557 ZFP91Q96JP5 570 aaPredicted RBP16.51■□□□□ 0.23
HOXC9-202ENST00000504557 PDLIM7Q9NR12 457 aa16.51■□□□□ 0.23
HOXC9-202ENST00000504557 SEC63Q9UGP8 760 aaKnown RBP16.51■□□□□ 0.23
HOXC9-202ENST00000504557 CTAGE5O15320 804 aa16.5■□□□□ 0.23
HOXC9-202ENST00000504557 MYL3P08590 195 aa16.5■□□□□ 0.23
HOXC9-202ENST00000504557 TXNP10599 105 aaKnown RBP16.5■□□□□ 0.23
HOXC9-202ENST00000504557 CHMP4BP1P59074 171 aa16.5■□□□□ 0.23
HOXC9-202ENST00000504557 SNX17Q15036 470 aa16.5■□□□□ 0.23
HOXC9-202ENST00000504557 DUSP28Q4G0W2 176 aa16.5■□□□□ 0.23
HOXC9-202ENST00000504557 JAKMIP1Q96N16 626 aaKnown RBP16.5■□□□□ 0.23
HOXC9-202ENST00000504557 PRO3102Q9H379 93 aa16.5■□□□□ 0.23
HOXC9-202ENST00000504557 TRIM43BA6NCK2 446 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 DCDC2CA8MYV0 355 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 ZEB2O60315 1214 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 CLTBP09497 229 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 CALM1P0DP23 149 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 CALM2P0DP24 149 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 CALM3P0DP25 149 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 EDNRBP24530 442 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 LIFRP42702 1097 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 PSMC6P62333 389 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 KRT32Q14532 448 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 STXBP2Q15833 593 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 DHX32Q7L7V1 743 aaKnown RBP16.49■□□□□ 0.23
HOXC9-202ENST00000504557 SRBD1Q8N5C6 995 aaKnown RBP16.49■□□□□ 0.23
HOXC9-202ENST00000504557 SCFD2Q8WU76 684 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 BADQ92934 168 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 TRIM43Q96BQ3 446 aaPredicted RBP16.49■□□□□ 0.23
HOXC9-202ENST00000504557 MTA3Q9BTC8 594 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 PXMP2Q9NR77 195 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 TMEM39AQ9NV64 488 aa16.49■□□□□ 0.23
HOXC9-202ENST00000504557 LOC102724159A0A0B4J2E5 919 aa16.48■□□□□ 0.23
HOXC9-202ENST00000504557 A0A0U1RQG5 324 aaPredicted RBP16.48■□□□□ 0.23
HOXC9-202ENST00000504557 GCOM1H8Y6P7 765 aaPredicted RBP16.48■□□□□ 0.23
HOXC9-202ENST00000504557 SORBS3O60504 671 aa16.48■□□□□ 0.23
HOXC9-202ENST00000504557 REC8O95072 547 aa16.48■□□□□ 0.23
HOXC9-202ENST00000504557 ARIH2O95376 493 aa16.48■□□□□ 0.23
HOXC9-202ENST00000504557 POLR2MP0CAP2 368 aa16.48■□□□□ 0.23
HOXC9-202ENST00000504557 GNAQP50148 359 aa16.48■□□□□ 0.23
HOXC9-202ENST00000504557 HSD17B4P51659 736 aa16.48■□□□□ 0.23
HOXC9-202ENST00000504557 TRAF1Q13077 416 aa16.48■□□□□ 0.23
HOXC9-202ENST00000504557 TTLL4Q14679 1199 aa16.48■□□□□ 0.23
HOXC9-202ENST00000504557 PWP2Q15269 919 aaKnown RBP16.48■□□□□ 0.23
HOXC9-202ENST00000504557 FANCBQ8NB91 859 aa16.48■□□□□ 0.23
HOXC9-202ENST00000504557 PPP1R13LQ8WUF5 828 aa16.48■□□□□ 0.23
HOXC9-202ENST00000504557 SPZ1Q9BXG8 430 aa16.48■□□□□ 0.23
HOXC9-202ENST00000504557 BRPF3Q9ULD4 1205 aa16.48■□□□□ 0.23
HOXC9-202ENST00000504557 KLF18A0A0U1RQI7 1052 aa16.47■□□□□ 0.23
HOXC9-202ENST00000504557 NR3C2P08235 984 aa16.47■□□□□ 0.23
HOXC9-202ENST00000504557 RAG1P15918 1043 aa16.47■□□□□ 0.23
HOXC9-202ENST00000504557 EXOSC10Q01780 885 aaKnown RBP16.47■□□□□ 0.23
HOXC9-202ENST00000504557 LY6KQ17RY6 165 aa16.47■□□□□ 0.23
HOXC9-202ENST00000504557 C1orf53Q5VUE5 145 aa16.47■□□□□ 0.23
HOXC9-202ENST00000504557 APOA5Q6Q788 366 aa16.47■□□□□ 0.23
HOXC9-202ENST00000504557 MAP3K14Q99558 947 aa16.47■□□□□ 0.23
HOXC9-202ENST00000504557 LZTS2Q9BRK4 669 aa16.47■□□□□ 0.23
HOXC9-202ENST00000504557 SNX14Q9Y5W7 946 aa16.47■□□□□ 0.23
HOXC9-202ENST00000504557 ELP1O95163 1332 aa16.46■□□□□ 0.23
HOXC9-202ENST00000504557 RBM47A0AV96 593 aaKnown RBP16.46■□□□□ 0.23
HOXC9-202ENST00000504557 ARVCFO00192 962 aa16.46■□□□□ 0.23
HOXC9-202ENST00000504557 SOX1O00570 391 aaPredicted RBP16.46■□□□□ 0.23
HOXC9-202ENST00000504557 ZBTB43O43298 467 aa16.46■□□□□ 0.23
HOXC9-202ENST00000504557 SLC34A2O95436 690 aa16.46■□□□□ 0.23
HOXC9-202ENST00000504557 BMP8BP34820 402 aa16.46■□□□□ 0.23
HOXC9-202ENST00000504557 HSPA4P34932 840 aa16.46■□□□□ 0.23
HOXC9-202ENST00000504557 CPT1AP50416 773 aa16.46■□□□□ 0.23
HOXC9-202ENST00000504557 FAAP100Q0VG06 881 aa16.46■□□□□ 0.23
HOXC9-202ENST00000504557 ITGA7Q13683 1181 aa16.46■□□□□ 0.23
HOXC9-202ENST00000504557 TDHQ8IZJ6 230 aa16.46■□□□□ 0.23
HOXC9-202ENST00000504557 IL31RAQ8NI17 732 aa16.46■□□□□ 0.23
HOXC9-202ENST00000504557 SMARCC2Q8TAQ2 1214 aa16.46■□□□□ 0.23
HOXC9-202ENST00000504557 IWS1Q96ST2 819 aa16.46■□□□□ 0.23
HOXC9-202ENST00000504557 Q9Y3F1 56 aa16.46■□□□□ 0.23
HOXC9-202ENST00000504557 RANBP2P49792 3224 aaKnown RBP16.46■□□□□ 0.23
HOXC9-202ENST00000504557 GOLGA8AA7E2F4 631 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 GOLGA8BA8MQT2 603 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 TLR3O15455 904 aaKnown RBP16.45■□□□□ 0.22
HOXC9-202ENST00000504557 ITGB8P26012 769 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 APOBRQ0VD83 1088 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 PGM5Q15124 567 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 RTN1Q16799 776 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 TSGA10IPQ3SY00 556 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 BRDTQ58F21 947 aaPredicted RBP16.45■□□□□ 0.22
HOXC9-202ENST00000504557 USP17L6PQ6QN14 398 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 BLOC1S2Q6QNY1 142 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 Q6ZUG5 572 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 TMTC3Q6ZXV5 915 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 HEATR3Q7Z4Q2 680 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 SGMS1Q86VZ5 419 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 GPKOWQ92917 476 aaPredicted RBP eCLIP16.45■□□□□ 0.22
HOXC9-202ENST00000504557 CUL5Q93034 780 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 LRCH3Q96II8 777 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 PDCD2LQ9BRP1 358 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 PPP1R12CQ9BZL4 782 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 MRVI1Q9Y6F6 885 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 MROH7Q68CQ1 1323 aa16.45■□□□□ 0.22
HOXC9-202ENST00000504557 NKRFO15226 690 aaKnown RBP eCLIP16.44■□□□□ 0.22
HOXC9-202ENST00000504557 CABYRO75952 493 aa16.44■□□□□ 0.22
HOXC9-202ENST00000504557 HMGB1P09429 215 aaKnown RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms