RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ABCB11O95342 1321 aa11.57□□□□□ -0.56
NUP54-203ENST00000504173 CTDNEP1O95476 244 aa11.56□□□□□ -0.56
NUP54-203ENST00000504173 HEATR3Q7Z4Q2 680 aa11.56□□□□□ -0.56
NUP54-203ENST00000504173 GPR142Q7Z601 462 aa11.56□□□□□ -0.56
NUP54-203ENST00000504173 GPKOWQ92917 476 aaPredicted RBP eCLIP11.56□□□□□ -0.56
NUP54-203ENST00000504173 SNX21Q969T3 373 aa11.56□□□□□ -0.56
NUP54-203ENST00000504173 EPHX3Q9H6B9 360 aa11.56□□□□□ -0.56
NUP54-203ENST00000504173 ACAD9Q9H845 621 aa11.56□□□□□ -0.56
NUP54-203ENST00000504173 MRPL11Q9Y3B7 192 aaKnown RBP11.56□□□□□ -0.56
NUP54-203ENST00000504173 PCDHA1Q9Y5I3 950 aa11.56□□□□□ -0.56
NUP54-203ENST00000504173 PTPDC1A2A3K4 754 aa11.55□□□□□ -0.56
NUP54-203ENST00000504173 hCG_1984214I3L0E3 225 aa11.55□□□□□ -0.56
NUP54-203ENST00000504173 K7ELQ4 463 aaPredicted RBP11.55□□□□□ -0.56
NUP54-203ENST00000504173 DEXIO95424 95 aa11.55□□□□□ -0.56
NUP54-203ENST00000504173 FCER1AP12319 257 aa11.55□□□□□ -0.56
NUP54-203ENST00000504173 SCG2P13521 617 aa11.55□□□□□ -0.56
NUP54-203ENST00000504173 PTPREP23469 700 aa11.55□□□□□ -0.56
NUP54-203ENST00000504173 KCTD2Q14681 263 aa11.55□□□□□ -0.56
NUP54-203ENST00000504173 PFKFB3Q16875 520 aaPredicted RBP11.55□□□□□ -0.56
NUP54-203ENST00000504173 MUM1L1Q5H9M0 696 aa11.55□□□□□ -0.56
NUP54-203ENST00000504173 WWC2Q6AWC2 1192 aa11.55□□□□□ -0.56
NUP54-203ENST00000504173 ZNF713Q8N859 430 aaPredicted RBP11.55□□□□□ -0.56
NUP54-203ENST00000504173 NSUN7Q8NE18 718 aaKnown RBP11.55□□□□□ -0.56
NUP54-203ENST00000504173 MMP19Q99542 508 aa11.55□□□□□ -0.56
NUP54-203ENST00000504173 LLPHQ9BRT6 129 aaKnown RBP11.55□□□□□ -0.56
NUP54-203ENST00000504173 ORC3Q9UBD5 711 aaPredicted RBP11.55□□□□□ -0.56
NUP54-203ENST00000504173 STK36Q9NRP7 1315 aa11.55□□□□□ -0.56
NUP54-203ENST00000504173 NFIBO00712 420 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 STRNO43815 780 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 JAK2O60674 1132 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 DTNBO60941 627 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 BMP1P13497 986 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 NAPAP54920 295 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 TRIM32Q13049 653 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 PKN1Q16512 942 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 NSMFQ6X4W1 530 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 ANKRD35Q8N283 1001 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 SOCS4Q8WXH5 440 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 CLEC4DQ8WXI8 215 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 DDX11Q96FC9 970 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 NECAB3Q96P71 396 aaPredicted RBP11.54□□□□□ -0.56
NUP54-203ENST00000504173 NUDT12Q9BQG2 462 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 C11orf16Q9NQ32 467 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 BARHL2Q9NY43 387 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 PRKAG2Q9UGJ0 569 aa11.54□□□□□ -0.56
NUP54-203ENST00000504173 CHD9Q3L8U1 2897 aa11.53□□□□□ -0.56
NUP54-203ENST00000504173 SMCHD1A6NHR9 2005 aa11.53□□□□□ -0.56
NUP54-203ENST00000504173 PLXNB2O15031 1838 aa11.53□□□□□ -0.56
NUP54-203ENST00000504173 SLC15A5A6NIM6 579 aa11.53□□□□□ -0.56
NUP54-203ENST00000504173 STXBP3O00186 592 aa11.53□□□□□ -0.56
NUP54-203ENST00000504173 ADORA2AP29274 412 aa11.53□□□□□ -0.56
NUP54-203ENST00000504173 HMGN5P82970 282 aaKnown RBP11.53□□□□□ -0.56
NUP54-203ENST00000504173 GRB14Q14449 540 aa11.53□□□□□ -0.56
NUP54-203ENST00000504173 LHX8Q68G74 356 aa11.53□□□□□ -0.56
NUP54-203ENST00000504173 PPP1R18Q6NYC8 613 aa11.53□□□□□ -0.56
NUP54-203ENST00000504173 RNF207Q6ZRF8 634 aa11.53□□□□□ -0.56
NUP54-203ENST00000504173 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.53□□□□□ -0.56
NUP54-203ENST00000504173 MCF2L2Q86YR7 1114 aa11.53□□□□□ -0.56
NUP54-203ENST00000504173 ABRAQ8N0Z2 381 aa11.53□□□□□ -0.56
NUP54-203ENST00000504173 SMARCC2Q8TAQ2 1214 aa11.53□□□□□ -0.56
NUP54-203ENST00000504173 CCDC12Q8WUD4 166 aaPredicted RBP11.53□□□□□ -0.56
NUP54-203ENST00000504173 WASF1Q92558 559 aa11.53□□□□□ -0.56
NUP54-203ENST00000504173 A1CFQ9NQ94 594 aaKnown RBP11.53□□□□□ -0.56
NUP54-203ENST00000504173 CXXC1Q9P0U4 656 aaPredicted RBP11.53□□□□□ -0.56
NUP54-203ENST00000504173 GJD2Q9UKL4 321 aa11.53□□□□□ -0.56
NUP54-203ENST00000504173 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.53□□□□□ -0.56
NUP54-203ENST00000504173 DOCK3Q8IZD9 2030 aa11.53□□□□□ -0.56
NUP54-203ENST00000504173 XIRP2A4UGR9 3374 aa11.52□□□□□ -0.56
NUP54-203ENST00000504173 CFBP00751 764 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 PRKAR2AP13861 404 aaKnown RBP11.52□□□□□ -0.57
NUP54-203ENST00000504173 FDPSP14324 419 aaKnown RBP11.52□□□□□ -0.57
NUP54-203ENST00000504173 CALML3P27482 149 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 RGS2P41220 211 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 RPS6P62753 249 aaKnown RBP11.52□□□□□ -0.57
NUP54-203ENST00000504173 FOXK2Q01167 660 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 MAP2K5Q13163 448 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 CUL4AQ13619 759 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 BAATQ14032 418 aaPredicted RBP11.52□□□□□ -0.57
NUP54-203ENST00000504173 MORN1Q5T089 497 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 DPP9Q86TI2 863 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 FAM184AQ8NB25 1140 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 RGS22Q8NE09 1264 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 CCDC148Q8NFR7 591 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 TRIB2Q92519 343 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 CUL5Q93034 780 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 AIFM3Q96NN9 605 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 GAS2L1Q99501 681 aaPredicted RBP11.52□□□□□ -0.57
NUP54-203ENST00000504173 ALG1Q9BT22 464 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 ZNF576Q9H609 170 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 SLC5A4Q9NY91 659 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 VPS54Q9P1Q0 977 aa11.52□□□□□ -0.57
NUP54-203ENST00000504173 ZNF236Q9UL36 1845 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 SMCO2A6NFE2 343 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 GCOM1H8Y6P7 765 aaPredicted RBP11.51□□□□□ -0.57
NUP54-203ENST00000504173 OPLAHO14841 1288 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 PGK2P07205 417 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 HSP90AA1P07900 732 aaKnown RBP11.51□□□□□ -0.57
NUP54-203ENST00000504173 POLR2MP0CAP2 368 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 XBP1P17861 261 aa11.51□□□□□ -0.57
NUP54-203ENST00000504173 CYP2B6P20813 491 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms