RNA–Protein interactions for RNA: ENST00000503338.5

TOPBP1-202, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 3

Gene TOPBP1, Length 618 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-202ENST00000503338 TPRNQ4KMQ1 711 aa9.2□□□□□ -0.94
TOPBP1-202ENST00000503338 SNRNP48Q6IEG0 339 aaKnown RBP9.2□□□□□ -0.94
TOPBP1-202ENST00000503338 RBM43Q6ZSC3 357 aaKnown RBP9.2□□□□□ -0.94
TOPBP1-202ENST00000503338 MOB2Q70IA6 237 aa9.2□□□□□ -0.94
TOPBP1-202ENST00000503338 CRYGNQ8WXF5 182 aa9.2□□□□□ -0.94
TOPBP1-202ENST00000503338 CLEC4DQ8WXI8 215 aa9.2□□□□□ -0.94
TOPBP1-202ENST00000503338 WNK4Q96J92 1243 aa9.2□□□□□ -0.94
TOPBP1-202ENST00000503338 FAM20AQ96MK3 541 aa9.2□□□□□ -0.94
TOPBP1-202ENST00000503338 CLIC6Q96NY7 704 aa9.2□□□□□ -0.94
TOPBP1-202ENST00000503338 CCSER1Q9C0I3 900 aa9.2□□□□□ -0.94
TOPBP1-202ENST00000503338 ACAD9Q9H845 621 aa9.2□□□□□ -0.94
TOPBP1-202ENST00000503338 RNF146Q9NTX7 359 aa9.2□□□□□ -0.94
TOPBP1-202ENST00000503338 CCDC39Q9UFE4 941 aa9.2□□□□□ -0.94
TOPBP1-202ENST00000503338 ZNF214Q9UL59 606 aaPredicted RBP9.2□□□□□ -0.94
TOPBP1-202ENST00000503338 SYCE3A1L190 88 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 GOLGA6L3A6NEY3 463 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 WNT7AO00755 349 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 ITGBL1O95965 494 aaPredicted RBP9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 HOXA13P31271 388 aaPredicted RBP9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 ZNF76P36508 570 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 UBA7P41226 1012 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 DGKZQ13574 1117 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 TMEM132BQ14DG7 1078 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 TREML2Q5T2D2 321 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 L1TD1Q5T7N2 865 aaKnown RBP9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 SASS6Q6UVJ0 657 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 RNF207Q6ZRF8 634 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 NIPA1Q7RTP0 329 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 FCHSD1Q86WN1 690 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 RIOX2Q8IUF8 465 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 CEP57L1Q8IYX8 460 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 KCTD17Q8N5Z5 321 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 IQUBQ8NA54 791 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 CNNM3Q8NE01 707 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 SYMPKQ92797 1274 aaKnown RBP9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 MTMR9Q96QG7 549 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 ASCC2Q9H1I8 757 aaPredicted RBP9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 TMEM60Q9H2L4 133 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 CUEDC2Q9H467 287 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 MAGEF1Q9HAY2 307 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 GPBP1L1Q9HC44 474 aaPredicted RBP9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 PFASO15067 1338 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 LOC285556D6RIA3 1793 aa9.19□□□□□ -0.94
TOPBP1-202ENST00000503338 B4DLN1 442 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 NFIBO00712 420 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 STAM2O75886 525 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 TDP2O95551 362 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 MYL1P05976 194 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 PTPRFP10586 1907 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 BCRP11274 1271 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 HERVK_113P62684 666 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 RPS6P62753 249 aaKnown RBP9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 CCNA1P78396 465 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 SEMA3FQ13275 785 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 PLS1Q14651 629 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 FRMPD4Q14CM0 1322 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 SPRYD7Q5W111 196 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 KRBA2Q6ZNG9 492 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 ANKRD23Q86SG2 305 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 RPTORQ8N122 1335 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 IGSF22Q8N9C0 903 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 SMC1BQ8NDV3 1235 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 DNERQ8NFT8 737 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 SYTL5Q8TDW5 730 aaPredicted RBP9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 ZNF526Q8TF50 670 aaPredicted RBP9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 CALML4Q96GE6 196 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 MPHOSPH6Q99547 160 aaKnown RBP9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 SPATC1LQ9H0A9 340 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 TSPY26PQ9H489 355 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 ZCCHC17Q9NP64 241 aaKnown RBP9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 KCNMB3Q9NPA1 279 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 PCDHA12Q9UN75 941 aa9.18□□□□□ -0.94
TOPBP1-202ENST00000503338 KDM3AQ9Y4C1 1321 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 CCL15-CCL14A0A0B4J2E2 113 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 MANSC4A6NHS7 340 aaPredicted RBP9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 POLR2DO15514 142 aaKnown RBP9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 MAFGO15525 162 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 SLC37A4O43826 429 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 EDIL3O43854 480 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 SLFN14P0C7P3 912 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 GJA5P36382 358 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 TXKP42681 527 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 GCLCP48506 637 aaPredicted RBP9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 HUNKP57058 714 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 INHBEP58166 350 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 GRIN1Q05586 938 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 MOGSQ13724 837 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 CAMK4Q16566 473 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 CCL15Q16663 113 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 CEP55Q53EZ4 464 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 PRR16Q569H4 304 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 MUM1L1Q5H9M0 696 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 ARHGEF16Q5VV41 709 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 RRAGBQ5VZM2 374 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 KRT79Q5XKE5 535 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 PCNX4Q63HM2 1172 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 HAUS3Q68CZ6 603 aa9.17□□□□□ -0.94
TOPBP1-202ENST00000503338 GPAT2Q6NUI2 795 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms