RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 ICAM1P05362 532 aa19.55■□□□□ 0.72
VIM-208ENST00000497849 PWP2Q15269 919 aaKnown RBP19.55■□□□□ 0.72
VIM-208ENST00000497849 RCSD1Q6JBY9 416 aa19.55■□□□□ 0.72
VIM-208ENST00000497849 AFAP1L1Q8TED9 768 aa19.55■□□□□ 0.72
VIM-208ENST00000497849 APPBP2Q92624 585 aa19.55■□□□□ 0.72
VIM-208ENST00000497849 RAD9AQ99638 391 aa19.55■□□□□ 0.72
VIM-208ENST00000497849 NOD1Q9Y239 953 aa19.55■□□□□ 0.72
VIM-208ENST00000497849 POTEB3A0JP26 581 aa19.54■□□□□ 0.72
VIM-208ENST00000497849 NFIBO00712 420 aa19.54■□□□□ 0.72
VIM-208ENST00000497849 KPNA6O60684 536 aa19.54■□□□□ 0.72
VIM-208ENST00000497849 HMMRO75330 724 aa19.54■□□□□ 0.72
VIM-208ENST00000497849 PTGISQ16647 500 aa19.54■□□□□ 0.72
VIM-208ENST00000497849 CSPP1Q1MSJ5 1256 aa19.54■□□□□ 0.72
VIM-208ENST00000497849 BRDTQ58F21 947 aaPredicted RBP19.54■□□□□ 0.72
VIM-208ENST00000497849 POTEBQ6S5H4 581 aa19.54■□□□□ 0.72
VIM-208ENST00000497849 CAGE1Q8TC20 777 aa19.54■□□□□ 0.72
VIM-208ENST00000497849 TRIOO75962 3097 aa19.54■□□□□ 0.72
VIM-208ENST00000497849 M0R2C6 588 aa19.53■□□□□ 0.72
VIM-208ENST00000497849 NKRFO15226 690 aaKnown RBP eCLIP19.53■□□□□ 0.72
VIM-208ENST00000497849 DCXO43602 365 aa19.53■□□□□ 0.72
VIM-208ENST00000497849 NBNO60934 754 aa19.53■□□□□ 0.72
VIM-208ENST00000497849 CXCL10P02778 98 aa19.53■□□□□ 0.72
VIM-208ENST00000497849 PPP2R5BQ15173 497 aa19.53■□□□□ 0.72
VIM-208ENST00000497849 CNKSR3Q6P9H4 555 aa19.53■□□□□ 0.72
VIM-208ENST00000497849 IFNL3Q8IZI9 196 aa19.53■□□□□ 0.72
VIM-208ENST00000497849 KBTBD3Q8NAB2 608 aa19.53■□□□□ 0.72
VIM-208ENST00000497849 NEK9Q8TD19 979 aa19.53■□□□□ 0.72
VIM-208ENST00000497849 DHX38Q92620 1227 aaKnown RBP19.53■□□□□ 0.72
VIM-208ENST00000497849 KCNH6Q9H252 994 aa19.53■□□□□ 0.72
VIM-208ENST00000497849 RANBP17Q9H2T7 1088 aaKnown RBP19.53■□□□□ 0.72
VIM-208ENST00000497849 RAD50Q92878 1312 aa19.52■□□□□ 0.72
VIM-208ENST00000497849 APPP05067 770 aa19.52■□□□□ 0.72
VIM-208ENST00000497849 SELPP16109 830 aa19.52■□□□□ 0.72
VIM-208ENST00000497849 GNAT2P19087 354 aa19.52■□□□□ 0.72
VIM-208ENST00000497849 GDF6Q6KF10 455 aaPredicted RBP19.52■□□□□ 0.72
VIM-208ENST00000497849 SLC30A10Q6XR72 485 aa19.52■□□□□ 0.72
VIM-208ENST00000497849 LRRC8DQ7L1W4 858 aa19.52■□□□□ 0.72
VIM-208ENST00000497849 CCDC155Q8N6L0 562 aa19.52■□□□□ 0.72
VIM-208ENST00000497849 IL17RBQ9NRM6 502 aa19.52■□□□□ 0.72
VIM-208ENST00000497849 PTPDC1A2A3K4 754 aa19.51■□□□□ 0.71
VIM-208ENST00000497849 PATL2C9JE40 543 aaKnown RBP19.51■□□□□ 0.71
VIM-208ENST00000497849 RNF113AO15541 343 aaKnown RBP19.51■□□□□ 0.71
VIM-208ENST00000497849 EDNRBP24530 442 aa19.51■□□□□ 0.71
VIM-208ENST00000497849 CHMP4BP1P59074 171 aa19.51■□□□□ 0.71
VIM-208ENST00000497849 PDE4BQ07343 736 aa19.51■□□□□ 0.71
VIM-208ENST00000497849 RBL2Q08999 1139 aa19.51■□□□□ 0.71
VIM-208ENST00000497849 SCFD2Q8WU76 684 aa19.51■□□□□ 0.71
VIM-208ENST00000497849 ANKS1AQ92625 1134 aa19.51■□□□□ 0.71
VIM-208ENST00000497849 C17orf80Q9BSJ5 609 aa19.51■□□□□ 0.71
VIM-208ENST00000497849 STX8Q9UNK0 236 aa19.51■□□□□ 0.71
VIM-208ENST00000497849 C5orf42Q9H799 3197 aa19.5■□□□□ 0.71
VIM-208ENST00000497849 ABHD14A-ACY1A0A1B0GW23 586 aa19.5■□□□□ 0.71
VIM-208ENST00000497849 H3BQ06 376 aaPredicted RBP19.5■□□□□ 0.71
VIM-208ENST00000497849 NMT2O60551 498 aa19.5■□□□□ 0.71
VIM-208ENST00000497849 ARIH2O95376 493 aa19.5■□□□□ 0.71
VIM-208ENST00000497849 PUS10Q3MIT2 529 aaKnown RBP19.5■□□□□ 0.71
VIM-208ENST00000497849 TTBK2Q6IQ55 1244 aa19.5■□□□□ 0.71
VIM-208ENST00000497849 FAM117BQ6P1L5 589 aa19.5■□□□□ 0.71
VIM-208ENST00000497849 SESTD1Q86VW0 696 aa19.5■□□□□ 0.71
VIM-208ENST00000497849 CLEC4DQ8WXI8 215 aa19.5■□□□□ 0.71
VIM-208ENST00000497849 ZBTB40Q9NUA8 1239 aa19.5■□□□□ 0.71
VIM-208ENST00000497849 USP34Q70CQ2 3546 aa19.49■□□□□ 0.71
VIM-208ENST00000497849 SMARCA5O60264 1052 aaPredicted RBP19.49■□□□□ 0.71
VIM-208ENST00000497849 TXNP10599 105 aaKnown RBP19.49■□□□□ 0.71
VIM-208ENST00000497849 CKBP12277 381 aa19.49■□□□□ 0.71
VIM-208ENST00000497849 CALML3P27482 149 aa19.49■□□□□ 0.71
VIM-208ENST00000497849 SLC16A2P36021 539 aa19.49■□□□□ 0.71
VIM-208ENST00000497849 PPARAQ07869 468 aa19.49■□□□□ 0.71
VIM-208ENST00000497849 PDE4DQ08499 809 aa19.49■□□□□ 0.71
VIM-208ENST00000497849 KAT2BQ92831 832 aa19.49■□□□□ 0.71
VIM-208ENST00000497849 ECHDC1Q9NTX5 307 aa19.49■□□□□ 0.71
VIM-208ENST00000497849 MTMR7Q9Y216 660 aa19.49■□□□□ 0.71
VIM-208ENST00000497849 MICAL3Q7RTP6 2002 aa19.48■□□□□ 0.71
VIM-208ENST00000497849 PARNO95453 639 aaKnown RBP19.48■□□□□ 0.71
VIM-208ENST00000497849 ZP2Q05996 745 aa19.48■□□□□ 0.71
VIM-208ENST00000497849 TRAF7Q6Q0C0 670 aa19.48■□□□□ 0.71
VIM-208ENST00000497849 BTNL9Q6UXG8 535 aa19.48■□□□□ 0.71
VIM-208ENST00000497849 RNF207Q6ZRF8 634 aa19.48■□□□□ 0.71
VIM-208ENST00000497849 HFE2Q6ZVN8 426 aa19.48■□□□□ 0.71
VIM-208ENST00000497849 FBXO22Q8NEZ5 403 aa19.48■□□□□ 0.71
VIM-208ENST00000497849 MRPL38Q96DV4 380 aaKnown RBP19.48■□□□□ 0.71
VIM-208ENST00000497849 INCENPQ9NQS7 918 aa19.48■□□□□ 0.71
VIM-208ENST00000497849 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.48■□□□□ 0.71
VIM-208ENST00000497849 MYO7AQ13402 2215 aa19.47■□□□□ 0.71
VIM-208ENST00000497849 C19orf67A6NJJ6 358 aa19.47■□□□□ 0.71
VIM-208ENST00000497849 NOVP48745 357 aa19.47■□□□□ 0.71
VIM-208ENST00000497849 RPS6P62753 249 aaKnown RBP19.47■□□□□ 0.71
VIM-208ENST00000497849 IKBKEQ14164 716 aa19.47■□□□□ 0.71
VIM-208ENST00000497849 MBTPS1Q14703 1052 aa19.47■□□□□ 0.71
VIM-208ENST00000497849 PPP4R3BQ5MIZ7 849 aa19.47■□□□□ 0.71
VIM-208ENST00000497849 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.47■□□□□ 0.71
VIM-208ENST00000497849 AFG1LQ8WV93 481 aa19.47■□□□□ 0.71
VIM-208ENST00000497849 SEC62Q99442 399 aaKnown RBP19.47■□□□□ 0.71
VIM-208ENST00000497849 LRRCC1Q9C099 1032 aa19.47■□□□□ 0.71
VIM-208ENST00000497849 EFCAB14O75071 495 aa19.46■□□□□ 0.71
VIM-208ENST00000497849 ZFYP08048 801 aaPredicted RBP19.46■□□□□ 0.71
VIM-208ENST00000497849 SLC3A2P08195 630 aaKnown RBP19.46■□□□□ 0.71
VIM-208ENST00000497849 MMP3P08254 477 aa19.46■□□□□ 0.71
VIM-208ENST00000497849 MKRN4PQ13434 485 aaPredicted RBP19.46■□□□□ 0.71
VIM-208ENST00000497849 CCDC96Q2M329 555 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms