RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 SHDQ96IW2 340 aa8.77□□□□□ -1.01
VIM-207ENST00000495528 MAPK8IP1Q9UQF2 711 aa8.77□□□□□ -1.01
VIM-207ENST00000495528 PCDH11XQ9BZA7 1347 aa8.77□□□□□ -1.01
VIM-207ENST00000495528 PCDH11YQ9BZA8 1340 aa8.77□□□□□ -1.01
VIM-207ENST00000495528 LY75O60449 1722 aa8.77□□□□□ -1.01
VIM-207ENST00000495528 DOT1LQ8TEK3 1739 aa8.77□□□□□ -1.01
VIM-207ENST00000495528 INSRP06213 1382 aa8.76□□□□□ -1.01
VIM-207ENST00000495528 TUBGCP6Q96RT7 1819 aa8.76□□□□□ -1.01
VIM-207ENST00000495528 PIGBQ92521 554 aa8.76□□□□□ -1.01
VIM-207ENST00000495528 ZNF512BQ96KM6 892 aaPredicted RBP8.76□□□□□ -1.01
VIM-207ENST00000495528 KREMEN1Q96MU8 473 aa8.76□□□□□ -1.01
VIM-207ENST00000495528 TM9SF2Q99805 663 aa8.76□□□□□ -1.01
VIM-207ENST00000495528 STRIP2Q9ULQ0 834 aa8.76□□□□□ -1.01
VIM-207ENST00000495528 ATP10DQ9P241 1426 aa8.76□□□□□ -1.01
VIM-207ENST00000495528 SHANK3Q9BYB0 1731 aa8.76□□□□□ -1.01
VIM-207ENST00000495528 RGPD2P0DJD1 1756 aa8.76□□□□□ -1.01
VIM-207ENST00000495528 GOLGB1Q14789 3259 aaKnown RBP8.75□□□□□ -1.01
VIM-207ENST00000495528 SMG6Q86US8 1419 aaKnown RBP8.75□□□□□ -1.01
VIM-207ENST00000495528 FAM155AB1AL88 458 aaPredicted RBP8.75□□□□□ -1.01
VIM-207ENST00000495528 IGF2BP3O00425 579 aaKnown RBP eCLIP8.75□□□□□ -1.01
VIM-207ENST00000495528 TNFRSF10CO14798 259 aa8.75□□□□□ -1.01
VIM-207ENST00000495528 LRRN2O75325 713 aa8.75□□□□□ -1.01
VIM-207ENST00000495528 FGRP09769 529 aa8.75□□□□□ -1.01
VIM-207ENST00000495528 GUCY2CP25092 1073 aa8.75□□□□□ -1.01
VIM-207ENST00000495528 HMGB2P26583 209 aaKnown RBP8.75□□□□□ -1.01
VIM-207ENST00000495528 ZEB1P37275 1124 aaPredicted RBP8.75□□□□□ -1.01
VIM-207ENST00000495528 ZYXQ15942 572 aaKnown RBP8.75□□□□□ -1.01
VIM-207ENST00000495528 FAM169BQ8N8A8 192 aa8.75□□□□□ -1.01
VIM-207ENST00000495528 SMARCC1Q92922 1105 aaPredicted RBP8.75□□□□□ -1.01
VIM-207ENST00000495528 SLC6A18Q96N87 628 aa8.75□□□□□ -1.01
VIM-207ENST00000495528 TANGO6Q9C0B7 1094 aa8.75□□□□□ -1.01
VIM-207ENST00000495528 FLT4P35916 1363 aa8.74□□□□□ -1.01
VIM-207ENST00000495528 SCO2A0A1W2PP80 73 aa8.74□□□□□ -1.01
VIM-207ENST00000495528 CEACAM5P06731 702 aa8.74□□□□□ -1.01
VIM-207ENST00000495528 ETFBP38117 255 aa8.74□□□□□ -1.01
VIM-207ENST00000495528 CDKAL1Q5VV42 579 aa8.74□□□□□ -1.01
VIM-207ENST00000495528 INTS5Q6P9B9 1019 aaKnown RBP8.74□□□□□ -1.01
VIM-207ENST00000495528 UNC5AQ6ZN44 842 aa8.74□□□□□ -1.01
VIM-207ENST00000495528 TMEM192Q8IY95 271 aa8.74□□□□□ -1.01
VIM-207ENST00000495528 LINC00116Q8NCU8 138 aa8.74□□□□□ -1.01
VIM-207ENST00000495528 NETO1Q8TDF5 533 aa8.74□□□□□ -1.01
VIM-207ENST00000495528 ZNF526Q8TF50 670 aaPredicted RBP8.74□□□□□ -1.01
VIM-207ENST00000495528 FAM86C1Q9NVL1 165 aa8.74□□□□□ -1.01
VIM-207ENST00000495528 PLAGL2Q9UPG8 496 aa8.74□□□□□ -1.01
VIM-207ENST00000495528 IGSF1Q8N6C5 1336 aa8.74□□□□□ -1.01
VIM-207ENST00000495528 PPM1GO15355 546 aaPredicted RBP8.73□□□□□ -1.01
VIM-207ENST00000495528 CLEC3AO75596 197 aa8.73□□□□□ -1.01
VIM-207ENST00000495528 MFSD4AQ8N468 514 aa8.73□□□□□ -1.01
VIM-207ENST00000495528 OR6P1Q8NGX9 317 aa8.73□□□□□ -1.01
VIM-207ENST00000495528 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.73□□□□□ -1.01
VIM-207ENST00000495528 ASAP1Q9ULH1 1129 aa8.73□□□□□ -1.01
VIM-207ENST00000495528 ADCY9O60503 1353 aa8.73□□□□□ -1.01
VIM-207ENST00000495528 KIF24Q5T7B8 1368 aa8.73□□□□□ -1.01
VIM-207ENST00000495528 HSPA6P17066 643 aa8.72□□□□□ -1.01
VIM-207ENST00000495528 CD97P48960 835 aa8.72□□□□□ -1.01
VIM-207ENST00000495528 ITPK1Q13572 414 aa8.72□□□□□ -1.01
VIM-207ENST00000495528 NKPD1Q17RQ9 610 aa8.72□□□□□ -1.01
VIM-207ENST00000495528 MSMPQ1L6U9 139 aa8.72□□□□□ -1.01
VIM-207ENST00000495528 INTS3Q68E01 1043 aaKnown RBP8.72□□□□□ -1.01
VIM-207ENST00000495528 TTC6Q86TZ1 520 aa8.72□□□□□ -1.01
VIM-207ENST00000495528 RNF141Q8WVD5 230 aa8.72□□□□□ -1.01
VIM-207ENST00000495528 GMLQ99445 158 aa8.72□□□□□ -1.01
VIM-207ENST00000495528 ZNF408Q9H9D4 720 aa8.72□□□□□ -1.01
VIM-207ENST00000495528 PCMTD2Q9NV79 361 aa8.72□□□□□ -1.01
VIM-207ENST00000495528 CAPN6Q9Y6Q1 641 aa8.72□□□□□ -1.01
VIM-207ENST00000495528 SMAD7O15105 426 aaKnown RBP8.71□□□□□ -1.02
VIM-207ENST00000495528 ZNF865P0CJ78 1059 aaPredicted RBP8.71□□□□□ -1.02
VIM-207ENST00000495528 CCNFP41002 786 aa8.71□□□□□ -1.02
VIM-207ENST00000495528 TNK2Q07912 1038 aa8.71□□□□□ -1.02
VIM-207ENST00000495528 IFI16Q16666 785 aaKnown RBP8.71□□□□□ -1.02
VIM-207ENST00000495528 TDRD10Q5VZ19 366 aaKnown RBP8.71□□□□□ -1.02
VIM-207ENST00000495528 SPACA3Q8IXA5 215 aa8.71□□□□□ -1.02
VIM-207ENST00000495528 TAB3Q8N5C8 712 aaPredicted RBP8.71□□□□□ -1.02
VIM-207ENST00000495528 Q96M66 194 aa8.71□□□□□ -1.02
VIM-207ENST00000495528 MKRN2Q9H000 416 aaKnown RBP8.71□□□□□ -1.02
VIM-207ENST00000495528 MKNK2Q9HBH9 465 aa8.71□□□□□ -1.02
VIM-207ENST00000495528 TMOD3Q9NYL9 352 aa8.71□□□□□ -1.02
VIM-207ENST00000495528 WASHC2AQ641Q2 1341 aa8.71□□□□□ -1.02
VIM-207ENST00000495528 C5P01031 1676 aa8.7□□□□□ -1.02
VIM-207ENST00000495528 A0A1W2PQH9 124 aa8.7□□□□□ -1.02
VIM-207ENST00000495528 H3BS24 57 aa8.7□□□□□ -1.02
VIM-207ENST00000495528 MMP10P09238 476 aa8.7□□□□□ -1.02
VIM-207ENST00000495528 PHKG2P15735 406 aa8.7□□□□□ -1.02
VIM-207ENST00000495528 KIR3DL1P43629 444 aa8.7□□□□□ -1.02
VIM-207ENST00000495528 BNIP3Q12983 259 aa8.7□□□□□ -1.02
VIM-207ENST00000495528 NBPF12Q5TAG4 269 aaPredicted RBP8.7□□□□□ -1.02
VIM-207ENST00000495528 IFNL2Q8IZJ0 200 aa8.7□□□□□ -1.02
VIM-207ENST00000495528 COX4I2Q96KJ9 171 aa8.7□□□□□ -1.02
VIM-207ENST00000495528 HSPA12BQ96MM6 686 aa8.7□□□□□ -1.02
VIM-207ENST00000495528 ASPNQ9BXN1 380 aa8.7□□□□□ -1.02
VIM-207ENST00000495528 TNKS2Q9H2K2 1166 aa8.7□□□□□ -1.02
VIM-207ENST00000495528 PCDHB10Q9UN67 800 aa8.7□□□□□ -1.02
VIM-207ENST00000495528 NSD3Q9BZ95 1437 aa8.7□□□□□ -1.02
VIM-207ENST00000495528 C4BP0C0L5 1744 aa8.69□□□□□ -1.02
VIM-207ENST00000495528 TP53P04637 393 aaPredicted RBP8.69□□□□□ -1.02
VIM-207ENST00000495528 ATP2B1P20020 1258 aa8.69□□□□□ -1.02
VIM-207ENST00000495528 CD96P40200 585 aa8.69□□□□□ -1.02
VIM-207ENST00000495528 AOC3Q16853 763 aa8.69□□□□□ -1.02
VIM-207ENST00000495528 C22orf34Q6ZV56 151 aa8.69□□□□□ -1.02
VIM-207ENST00000495528 DTWD2Q8NBA8 298 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms