RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 GPR162Q16538 588 aa20.92■□□□□ 0.94
COL27A1-207ENST00000494090 TROVE2P10155 538 aaKnown RBP eCLIP20.91■□□□□ 0.945e-8■■□□□ 11.4
COL27A1-207ENST00000494090 BCAS4Q8TDM0 211 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 RWDD2AQ9UIY3 292 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 TARBP1Q13395 1621 aaKnown RBP20.91■□□□□ 0.94
COL27A1-207ENST00000494090 OATP04181 439 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 CRKLP46109 303 aaKnown RBP20.91■□□□□ 0.94
COL27A1-207ENST00000494090 VSTM4Q8IW00 320 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 FAM81BQ96LP2 452 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 RUNDC3BQ96NL0 473 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 CSRNP1Q96S65 589 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 KRT12Q99456 494 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 CASQ2O14958 399 aaPredicted RBP20.91■□□□□ 0.94
COL27A1-207ENST00000494090 GCFC2P16383 781 aaKnown RBP20.91■□□□□ 0.94
COL27A1-207ENST00000494090 KCTD2Q14681 263 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 PPP1R2P3Q6NXS1 205 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 KIAA1024Q9UPX6 916 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 SRPRBQ9Y5M8 271 aaKnown RBP20.91■□□□□ 0.94
COL27A1-207ENST00000494090 ROBO2Q9HCK4 1378 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 ATP1A2P50993 1020 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 SCNN1DP51172 638 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 SEPT6Q14141 434 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 USPL1Q5W0Q7 1092 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 KLHL14Q9P2G3 628 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 USH1CQ9Y6N9 552 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 ASAP1Q9ULH1 1129 aa20.91■□□□□ 0.94
COL27A1-207ENST00000494090 PRPF3O43395 683 aaKnown RBP20.9■□□□□ 0.94
COL27A1-207ENST00000494090 BBOX1O75936 387 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 LIFRP42702 1097 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 GUCY2DQ02846 1103 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 EHHADHQ08426 723 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 NCAPG2Q86XI2 1143 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 IFT122Q9HBG6 1241 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 PPEF1O14829 653 aaPredicted RBP20.9■□□□□ 0.94
COL27A1-207ENST00000494090 GAP43P17677 238 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 GOLGA8FQ08AF8 430 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 GOLGA8DPQ0D2H9 430 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 DOK7Q18PE1 504 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 CTAGE3PQ8IX95 158 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.9■□□□□ 0.94
COL27A1-207ENST00000494090 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.9■□□□□ 0.94
COL27A1-207ENST00000494090 HMGB1P1B2RPK0 211 aaPredicted RBP20.9■□□□□ 0.94
COL27A1-207ENST00000494090 LMNB1P20700 586 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 PHLDB2Q86SQ0 1253 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 MMS19Q96T76 1030 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 WDR17Q8IZU2 1322 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 GOLGA8CPA6NN73 597 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 MAN1A1P33908 653 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 MAP3K21Q5TCX8 1036 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 ANKRD13CQ8N6S4 541 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 CAPN7Q9Y6W3 813 aa20.9■□□□□ 0.94
COL27A1-207ENST00000494090 RNF8O76064 485 aa20.89■□□□□ 0.94
COL27A1-207ENST00000494090 MAN2A1Q16706 1144 aa20.89■□□□□ 0.94
COL27A1-207ENST00000494090 PPP4R1Q8TF05 950 aa20.89■□□□□ 0.94
COL27A1-207ENST00000494090 BAIAP2L1Q9UHR4 511 aa20.89■□□□□ 0.94
COL27A1-207ENST00000494090 PREX2Q70Z35 1606 aa20.89■□□□□ 0.93
COL27A1-207ENST00000494090 CCDC13Q8IYE1 715 aa20.89■□□□□ 0.93
COL27A1-207ENST00000494090 STK17AQ9UEE5 414 aa20.89■□□□□ 0.93
COL27A1-207ENST00000494090 COBLO75128 1261 aa20.89■□□□□ 0.93
COL27A1-207ENST00000494090 IFNB1P01574 187 aa20.89■□□□□ 0.93
COL27A1-207ENST00000494090 SH2D4BQ5SQS7 431 aa20.89■□□□□ 0.93
COL27A1-207ENST00000494090 MAP7D3Q8IWC1 876 aa20.89■□□□□ 0.93
COL27A1-207ENST00000494090 SMYD4Q8IYR2 804 aaPredicted RBP20.89■□□□□ 0.93
COL27A1-207ENST00000494090 RSPH3Q86UC2 560 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 LCORLQ8N3X6 602 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 WDR11Q9BZH6 1224 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 SUGCTQ9HAC7 445 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 ADD3Q9UEY8 706 aaKnown RBP20.88■□□□□ 0.93
COL27A1-207ENST00000494090 ENC1O14682 589 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 SCYL2Q6P3W7 929 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 PPM1KQ8N3J5 372 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 TRIM11Q96F44 468 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 CDHR1Q96JP9 859 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 PRR36Q9H6K5 1346 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 ZBTB1Q9Y2K1 713 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 DYNLL1P63167 89 aaKnown RBP20.88■□□□□ 0.93
COL27A1-207ENST00000494090 NR5A1Q13285 461 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 GRAMD1CQ8IYS0 662 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 RNF169Q8NCN4 708 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 ZSWIM5Q9P217 1185 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 PASKQ96RG2 1323 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 PLCB4Q15147 1175 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 ARHGAP27Q6ZUM4 889 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 RNF10Q8N5U6 811 aaKnown RBP20.88■□□□□ 0.93
COL27A1-207ENST00000494090 NBPF3Q9H094 633 aa20.88■□□□□ 0.93
COL27A1-207ENST00000494090 LRRIQ4A6NIV6 560 aa20.87■□□□□ 0.93
COL27A1-207ENST00000494090 TTLL1O95922 423 aa20.87■□□□□ 0.93
COL27A1-207ENST00000494090 NSFP46459 744 aaKnown RBP20.87■□□□□ 0.93
COL27A1-207ENST00000494090 PTPROQ16827 1216 aa20.87■□□□□ 0.93
COL27A1-207ENST00000494090 SUPT20HL1Q3ZLR7 823 aa20.87■□□□□ 0.93
COL27A1-207ENST00000494090 FAM196AQ6ZSG2 479 aa20.87■□□□□ 0.93
COL27A1-207ENST00000494090 GJA10Q969M2 543 aa20.87■□□□□ 0.93
COL27A1-207ENST00000494090 PPP1R12CQ9BZL4 782 aa20.87■□□□□ 0.93
COL27A1-207ENST00000494090 THAP9Q9H5L6 903 aa20.87■□□□□ 0.93
COL27A1-207ENST00000494090 TLR3O15455 904 aaKnown RBP20.87■□□□□ 0.93
COL27A1-207ENST00000494090 PTK2Q05397 1052 aa20.87■□□□□ 0.93
COL27A1-207ENST00000494090 NR2F2P24468 414 aa20.87■□□□□ 0.93
COL27A1-207ENST00000494090 EPHB4P54760 987 aa20.87■□□□□ 0.93
COL27A1-207ENST00000494090 MFAP3P55082 362 aa20.87■□□□□ 0.93
COL27A1-207ENST00000494090 SF3A3Q12874 501 aaKnown RBP eCLIP20.87■□□□□ 0.932e-7■■■■□ 25.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms