RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 ZNF236Q9UL36 1845 aa10.97□□□□□ -0.65
USP54-214ENST00000492357 RASSF10A6NK89 507 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 BTBD19C9JJ37 291 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 PDHXO00330 501 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 STRNO43815 780 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 LETM1O95202 739 aaPredicted RBP10.96□□□□□ -0.65
USP54-214ENST00000492357 CFBP00751 764 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 YY1P25490 414 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 TM4SF4P48230 202 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 ARHGAP4P98171 946 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 FMR1Q06787 632 aaKnown RBP eCLIP10.96□□□□□ -0.65
USP54-214ENST00000492357 DGKZQ13574 1117 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 PDIA5Q14554 519 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 FAM110CQ1W6H9 321 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 EARS2Q5JPH6 523 aaKnown RBP10.96□□□□□ -0.65
USP54-214ENST00000492357 AXDND1Q5T1B0 1012 aaPredicted RBP10.96□□□□□ -0.65
USP54-214ENST00000492357 PCNX4Q63HM2 1172 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 USP17L6PQ6QN14 398 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 CPXCR1Q8N123 301 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 SMCR8Q8TEV9 937 aaPredicted RBP10.96□□□□□ -0.65
USP54-214ENST00000492357 FAM20AQ96MK3 541 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 IWS1Q96ST2 819 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 DDX19AQ9NUU7 478 aaKnown RBP10.96□□□□□ -0.65
USP54-214ENST00000492357 ADD3Q9UEY8 706 aaKnown RBP10.96□□□□□ -0.65
USP54-214ENST00000492357 USP25Q9UHP3 1055 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 PCDHA7Q9UN72 937 aa10.96□□□□□ -0.65
USP54-214ENST00000492357 UTRNP46939 3433 aa10.96□□□□□ -0.66
USP54-214ENST00000492357 MYH7BA7E2Y1 1941 aa10.96□□□□□ -0.66
USP54-214ENST00000492357 FAM155AB1AL88 458 aaPredicted RBP10.95□□□□□ -0.66
USP54-214ENST00000492357 TRAK2O60296 914 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 CCNT1O60563 726 aaKnown RBP10.95□□□□□ -0.66
USP54-214ENST00000492357 OR52Z1P0C646 297 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 FXR2P51116 673 aaKnown RBP eCLIP10.95□□□□□ -0.66
USP54-214ENST00000492357 APLP1P51693 650 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 RPS6P62753 249 aaKnown RBP10.95□□□□□ -0.66
USP54-214ENST00000492357 ERVK-9P63128 1117 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 ERVK-24P63145 666 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 FAM160A1Q05DH4 1040 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 PTGDRQ13258 359 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 IRF5Q13568 498 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 TMEM266Q2M3C6 531 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 LETM2Q2VYF4 491 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 CCDC73Q6ZRK6 1079 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 C4orf32Q8N8J7 132 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 ZNF784Q8NCA9 323 aaPredicted RBP10.95□□□□□ -0.66
USP54-214ENST00000492357 GPRC5AQ8NFJ5 357 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 RASGRP4Q8TDF6 673 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 SYTL5Q8TDW5 730 aaPredicted RBP10.95□□□□□ -0.66
USP54-214ENST00000492357 NSUN6Q8TEA1 469 aaKnown RBP10.95□□□□□ -0.66
USP54-214ENST00000492357 MRPS27Q92552 414 aaKnown RBP10.95□□□□□ -0.66
USP54-214ENST00000492357 CDHR1Q96JP9 859 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 TIGD1Q96MW7 591 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 CFHR5Q9BXR6 569 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 FAM13BQ9NYF5 915 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 RBPJLQ9UBG7 517 aa10.95□□□□□ -0.66
USP54-214ENST00000492357 FBXO2Q9UK22 296 aaPredicted RBP10.95□□□□□ -0.66
USP54-214ENST00000492357 FAM205CA6NFA0 338 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 NFIBO00712 420 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 CTAGE5O15320 804 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 CNMDO75829 334 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 MAPK4P31152 587 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 TXLNAP40222 546 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 UBE2SQ16763 222 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 FOXD4L6Q3SYB3 417 aaPredicted RBP10.94□□□□□ -0.66
USP54-214ENST00000492357 CEP55Q53EZ4 464 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 RESP18Q5W5W9 173 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 KANK3Q6NY19 840 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 FOXD4L3Q6VB84 417 aaPredicted RBP10.94□□□□□ -0.66
USP54-214ENST00000492357 DTHD1Q6ZMT9 781 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 PGBD1Q96JS3 809 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 MTMR9Q96QG7 549 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 MOV10L1Q9BXT6 1211 aaKnown RBP10.94□□□□□ -0.66
USP54-214ENST00000492357 KCNMB3Q9NPA1 279 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 A1CFQ9NQ94 594 aaKnown RBP10.94□□□□□ -0.66
USP54-214ENST00000492357 TMEM260Q9NX78 707 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 CYP39A1Q9NYL5 469 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 BTBD7Q9P203 1132 aa10.94□□□□□ -0.66
USP54-214ENST00000492357 DDX25Q9UHL0 483 aaKnown RBP10.94□□□□□ -0.66
USP54-214ENST00000492357 ABT1Q9ULW3 272 aaKnown RBP10.94□□□□□ -0.66
USP54-214ENST00000492357 ADGRA2Q96PE1 1338 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 MEIS1O00470 390 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 MUTP22033 750 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 MCM7P33993 719 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 SNAP25P60880 206 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 CEBPZQ03701 1054 aaKnown RBP10.93□□□□□ -0.66
USP54-214ENST00000492357 SEMA3FQ13275 785 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 KCTD2Q14681 263 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 CALCRLQ16602 461 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 MUM1L1Q5H9M0 696 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 NSMFQ6X4W1 530 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 ZNF467Q7Z7K2 595 aaPredicted RBP10.93□□□□□ -0.66
USP54-214ENST00000492357 IFNL1Q8IU54 200 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 FAM43AQ8N2R8 423 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 MSL3Q8N5Y2 521 aaKnown RBP10.93□□□□□ -0.66
USP54-214ENST00000492357 IGSF22Q8N9C0 903 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 GPRASP2Q96D09 838 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 RIT2Q99578 217 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 PDCD2LQ9BRP1 358 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 CUEDC2Q9H467 287 aa10.93□□□□□ -0.66
USP54-214ENST00000492357 MAGEF1Q9HAY2 307 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms