RNA–Protein interactions for RNA: ENST00000491292.5

ERCC3-208, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, human

TSL 2

Gene ERCC3, Length 4,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERCC3-208	ENST00000491292	CCNE1	P24864	410 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	ELF1	P32519	619 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	TNNI2	P48788	182 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	TFAP4	Q01664	338 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	ZFYVE27	Q5T4F4	411 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	CNNM4	Q6P4Q7	775 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	WDR59	Q6PJI9	974 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	CCDC13	Q8IYE1	715 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	TEX11	Q8IYF3	940 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	FAM133A	Q8N9E0	248 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	EPN3	Q9H201	632 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	CYP2D6	P10635	497 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	MAGOH	P61326	146 aa	Known RBP	10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	APTX	Q7Z2E3	356 aa	Known RBP	10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	MAGOHB	Q96A72	148 aa	Known RBP	10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	TFCP2L1	Q9NZI6	479 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	SAMD15	Q9P1V8	674 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	SAP30BP	Q9UHR5	308 aa	Known RBP	10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	PRPF3	O43395	683 aa	Known RBP	10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	ABCB4	P21439	1286 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	MDH1	P40925	334 aa	Known RBP	10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	ATP2C1	P98194	919 aa	Predicted RBP	10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	DHX9	Q08211	1270 aa	Known RBP	10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	MYO1E	Q12965	1108 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	SUGP1	Q8IWZ8	645 aa	Known RBP	10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	SRBD1	Q8N5C6	995 aa	Known RBP	10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	MDM1	Q8TC05	714 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	LRRC45	Q96CN5	670 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	WDR19	Q8NEZ3	1342 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	PDE8A	O60658	829 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	CDC25C	P30307	473 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	LONP1	P36776	959 aa	Known RBP	10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	PBX1	P40424	430 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	TMEM266	Q2M3C6	531 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	TRIM68	Q6AZZ1	485 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	RUFY4	Q6ZNE9	571 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	ATP6V1G3	Q96LB4	118 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	TMEM60	Q9H2L4	133 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	THAP9	Q9H5L6	903 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	GOLGA6L10	A0A0M3HER8	536 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	FAM237A	A0A1B0GTK4	181 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292		A6NNZ2	444 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	CALR	P27797	417 aa	Known RBP	10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	EIF6	P56537	245 aa	Known RBP	10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	TUBB8	Q3ZCM7	444 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	HAUS3	Q68CZ6	603 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	PEX26	Q7Z412	305 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	CCDC84	Q86UT8	332 aa	Predicted RBP	10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	PARP9	Q8IXQ6	854 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	MYCBPAP	Q8TBZ2	947 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	MLXIPL	Q9NP71	852 aa		10.82	□□□□□ -0.68
ERCC3-208	ENST00000491292	PTGIS	Q16647	500 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	CREG2	Q8IUH2	290 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	ANKRD42	Q8N9B4	389 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	PHF20	Q9BVI0	1012 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	CRNKL1	Q9BZJ0	848 aa	Known RBP	10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	GMNC	A6NCL1	334 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	SRGN	P10124	158 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	MKRN4P	Q13434	485 aa	Predicted RBP	10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	ASIC2	Q16515	512 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	SNX29	Q8TEQ0	813 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	AEN	Q8WTP8	325 aa	Known RBP	10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	STAG1	Q8WVM7	1258 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	SH2D4A	Q9H788	454 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	HEG1	Q9ULI3	1381 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	TXNRD1	Q16881	649 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	KCNV1	Q6PIU1	500 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	CCDC63	Q8NA47	563 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	CYFIP2	Q96F07	1278 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	ELAC2	Q9BQ52	826 aa	Known RBP	10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	UBE4A	Q14139	1066 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	ZKSCAN8	Q15776	578 aa	Predicted RBP	10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	TMTC3	Q6ZXV5	915 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	HVCN1	Q96D96	273 aa		10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	DHTKD1	Q96HY7	919 aa	Predicted RBP	10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	NIP7	Q9Y221	180 aa	Known RBP eCLIP	10.81	□□□□□ -0.68
ERCC3-208	ENST00000491292	SPATA31D1	Q6ZQQ2	1576 aa		10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	RAD51C	O43502	376 aa		10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	PAX7	P23759	505 aa		10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	VWA3B	Q502W6	1294 aa		10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	HERC4	Q5GLZ8	1057 aa	Predicted RBP	10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	KRT79	Q5XKE5	535 aa		10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	VPS36	Q86VN1	386 aa		10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	NLRP10	Q86W26	655 aa		10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	SPATS2	Q86XZ4	545 aa	Known RBP	10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	PNMA1	Q8ND90	353 aa		10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	DNAJC7	Q99615	494 aa		10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	ARHGAP20	Q9P2F6	1191 aa		10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	FBXL5	Q9UKA1	691 aa		10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	FAM208A	Q9UK61	1670 aa	Known RBP	10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	DAPK3	O43293	454 aa		10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	IK	Q13123	557 aa	Predicted RBP	10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	FBXL16	Q8N461	479 aa		10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	CASKIN2	Q8WXE0	1202 aa		10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	MTMR8	Q96EF0	704 aa		10.8	□□□□□ -0.68
ERCC3-208	ENST00000491292	MTR	Q99707	1265 aa		10.8	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms